HEADER LIGASE 06-NOV-06 2E21 TITLE CRYSTAL STRUCTURE OF TILS IN A COMPLEX WITH AMPPNP FROM AQUIFEX TITLE 2 AEOLICUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA(ILE)-LYSIDINE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRNA(ILE)-LYSIDINE SYNTHETASE, TRNA(ILE)-2-LYSYL-CYTIDINE COMPND 5 SYNTHASE; COMPND 6 EC: 6.3.4.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: TILS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ROSSMANN-FOLD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KURATANI,Y.YOSHIKAWA,S.SEKINE,T.ISHII,R.SHIBATA,Y.BESSHO, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 25-OCT-23 2E21 1 REMARK REVDAT 4 13-JUL-11 2E21 1 VERSN REVDAT 3 24-FEB-09 2E21 1 VERSN REVDAT 2 13-NOV-07 2E21 1 JRNL REVDAT 1 06-NOV-07 2E21 0 JRNL AUTH M.KURATANI,Y.YOSHIKAWA,Y.BESSHO,K.HIGASHIJIMA,T.ISHII, JRNL AUTH 2 R.SHIBATA,S.TAKAHASHI,K.YUTANI,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS OF THE INITIAL BINDING OF TRNA(ILE) JRNL TITL 2 LYSIDINE SYNTHETASE TILS WITH ATP AND L-LYSINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1537074.930 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 44291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2199 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6777 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 326 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.20000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : 9.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 10.60000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.370 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.140 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 24.86 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : AMPPNP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000026127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 1.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : 0.44200 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WY5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE, 0.2M AMMONIUM REMARK 280 ACETATE, 20% PEG 4000, PH 5.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.11550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 315 REMARK 465 GLU B 316 REMARK 465 VAL B 317 REMARK 465 PRO C 315 REMARK 465 GLU C 316 REMARK 465 VAL C 317 REMARK 465 PRO D 315 REMARK 465 GLU D 316 REMARK 465 VAL D 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 95 CB ALA A 98 1.93 REMARK 500 OE1 GLU A 162 O HOH A 544 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 98 CA ALA A 98 CB -0.337 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 97 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 ALA A 98 CB - CA - C ANGL. DEV. = -10.3 DEGREES REMARK 500 GLU A 100 N - CA - C ANGL. DEV. = -21.9 DEGREES REMARK 500 GLU B 196 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 CYS C 253 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 22 23.09 -145.74 REMARK 500 MET A 64 60.42 66.02 REMARK 500 LEU A 65 -53.43 -126.81 REMARK 500 ALA A 98 84.55 -25.38 REMARK 500 LYS A 99 19.80 59.70 REMARK 500 ARG A 102 83.15 57.23 REMARK 500 MET A 103 128.59 -177.31 REMARK 500 SER A 104 150.25 -39.02 REMARK 500 THR A 150 -176.08 179.98 REMARK 500 GLU A 163 -123.39 50.15 REMARK 500 ASP A 191 -77.39 -69.61 REMARK 500 GLU A 192 -6.18 86.24 REMARK 500 GLU A 196 39.49 -142.57 REMARK 500 VAL A 208 -64.37 -92.19 REMARK 500 LYS A 260 -31.86 -37.33 REMARK 500 LEU A 298 -97.95 -100.34 REMARK 500 LYS A 300 79.61 -63.15 REMARK 500 GLU A 308 -122.37 68.03 REMARK 500 SER B 22 51.95 -155.03 REMARK 500 LEU B 65 -83.09 -89.58 REMARK 500 ASP B 93 86.40 -65.13 REMARK 500 ARG B 95 -71.64 -58.30 REMARK 500 LYS B 99 -74.78 -61.74 REMARK 500 GLU B 100 -15.98 -46.38 REMARK 500 GLU B 163 -122.58 49.25 REMARK 500 PHE B 183 -38.33 -39.18 REMARK 500 ASN B 218 34.34 -98.79 REMARK 500 TYR B 245 -73.22 -52.22 REMARK 500 GLU B 247 -13.26 -169.49 REMARK 500 ASP B 255 82.95 -54.33 REMARK 500 LEU B 289 48.37 -74.97 REMARK 500 LEU B 298 -132.84 -122.56 REMARK 500 LYS B 300 90.87 -41.50 REMARK 500 GLU B 308 -124.78 65.00 REMARK 500 ARG B 309 32.78 -80.81 REMARK 500 SER C 22 53.96 -147.95 REMARK 500 MET C 64 -12.74 63.75 REMARK 500 LEU C 65 -75.00 -46.98 REMARK 500 ASN C 84 37.58 72.83 REMARK 500 GLU C 163 -127.52 49.88 REMARK 500 LEU C 254 -168.31 -119.94 REMARK 500 TYR C 280 -74.24 -33.80 REMARK 500 LEU C 285 -60.85 -104.49 REMARK 500 GLU C 291 -53.03 -142.71 REMARK 500 LYS C 300 -1.64 -56.69 REMARK 500 LYS C 307 -158.72 -88.14 REMARK 500 SER D 22 73.53 -150.85 REMARK 500 GLU D 55 140.35 179.63 REMARK 500 ALA D 69 -87.58 -36.92 REMARK 500 LYS D 81 -39.27 -40.00 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AAE001001887.4 RELATED DB: TARGETDB DBREF 2E21 A 1 317 UNP O67728 TILS_AQUAE 1 317 DBREF 2E21 B 1 317 UNP O67728 TILS_AQUAE 1 317 DBREF 2E21 C 1 317 UNP O67728 TILS_AQUAE 1 317 DBREF 2E21 D 1 317 UNP O67728 TILS_AQUAE 1 317 SEQRES 1 A 317 MET ASN PRO GLU SER ARG VAL ILE ARG LYS VAL LEU ALA SEQRES 2 A 317 LEU GLN ASN ASP GLU LYS ILE PHE SER GLY GLU ARG ARG SEQRES 3 A 317 VAL LEU ILE ALA PHE SER GLY GLY VAL ASP SER VAL VAL SEQRES 4 A 317 LEU THR ASP VAL LEU LEU LYS LEU LYS ASN TYR PHE SER SEQRES 5 A 317 LEU LYS GLU VAL ALA LEU ALA HIS PHE ASN HIS MET LEU SEQRES 6 A 317 ARG GLU SER ALA GLU ARG ASP GLU GLU PHE CYS LYS GLU SEQRES 7 A 317 PHE ALA LYS GLU ARG ASN MET LYS ILE PHE VAL GLY LYS SEQRES 8 A 317 GLU ASP VAL ARG ALA PHE ALA LYS GLU ASN ARG MET SER SEQRES 9 A 317 LEU GLU GLU ALA GLY ARG PHE LEU ARG TYR LYS PHE LEU SEQRES 10 A 317 LYS GLU ILE LEU GLU SER GLU GLY PHE ASP CYS ILE ALA SEQRES 11 A 317 THR ALA HIS HIS LEU ASN ASP LEU LEU GLU THR SER LEU SEQRES 12 A 317 LEU PHE PHE THR ARG GLY THR GLY LEU ASP GLY LEU ILE SEQRES 13 A 317 GLY PHE LEU PRO LYS GLU GLU VAL ILE ARG ARG PRO LEU SEQRES 14 A 317 TYR TYR VAL LYS ARG SER GLU ILE GLU GLU TYR ALA LYS SEQRES 15 A 317 PHE LYS GLY LEU ARG TRP VAL GLU ASP GLU THR ASN TYR SEQRES 16 A 317 GLU VAL SER ILE PRO ARG ASN ARG ILE ARG HIS ARG VAL SEQRES 17 A 317 ILE PRO GLU LEU LYS ARG ILE ASN GLU ASN LEU GLU ASP SEQRES 18 A 317 THR PHE LEU LYS MET VAL LYS VAL LEU ARG ALA GLU ARG SEQRES 19 A 317 GLU PHE LEU GLU GLU GLU ALA GLN LYS LEU TYR LYS GLU SEQRES 20 A 317 VAL LYS LYS GLY ASN CYS LEU ASP VAL LYS LYS LEU LYS SEQRES 21 A 317 GLU LYS PRO LEU ALA LEU GLN ARG ARG VAL ILE ARG LYS SEQRES 22 A 317 PHE ILE GLY GLU LYS ASP TYR GLU LYS VAL GLU LEU VAL SEQRES 23 A 317 ARG SER LEU LEU GLU LYS GLY GLY GLU VAL ASN LEU GLY SEQRES 24 A 317 LYS GLY LYS VAL LEU LYS ARG LYS GLU ARG TRP LEU CYS SEQRES 25 A 317 PHE SER PRO GLU VAL SEQRES 1 B 317 MET ASN PRO GLU SER ARG VAL ILE ARG LYS VAL LEU ALA SEQRES 2 B 317 LEU GLN ASN ASP GLU LYS ILE PHE SER GLY GLU ARG ARG SEQRES 3 B 317 VAL LEU ILE ALA PHE SER GLY GLY VAL ASP SER VAL VAL SEQRES 4 B 317 LEU THR ASP VAL LEU LEU LYS LEU LYS ASN TYR PHE SER SEQRES 5 B 317 LEU LYS GLU VAL ALA LEU ALA HIS PHE ASN HIS MET LEU SEQRES 6 B 317 ARG GLU SER ALA GLU ARG ASP GLU GLU PHE CYS LYS GLU SEQRES 7 B 317 PHE ALA LYS GLU ARG ASN MET LYS ILE PHE VAL GLY LYS SEQRES 8 B 317 GLU ASP VAL ARG ALA PHE ALA LYS GLU ASN ARG MET SER SEQRES 9 B 317 LEU GLU GLU ALA GLY ARG PHE LEU ARG TYR LYS PHE LEU SEQRES 10 B 317 LYS GLU ILE LEU GLU SER GLU GLY PHE ASP CYS ILE ALA SEQRES 11 B 317 THR ALA HIS HIS LEU ASN ASP LEU LEU GLU THR SER LEU SEQRES 12 B 317 LEU PHE PHE THR ARG GLY THR GLY LEU ASP GLY LEU ILE SEQRES 13 B 317 GLY PHE LEU PRO LYS GLU GLU VAL ILE ARG ARG PRO LEU SEQRES 14 B 317 TYR TYR VAL LYS ARG SER GLU ILE GLU GLU TYR ALA LYS SEQRES 15 B 317 PHE LYS GLY LEU ARG TRP VAL GLU ASP GLU THR ASN TYR SEQRES 16 B 317 GLU VAL SER ILE PRO ARG ASN ARG ILE ARG HIS ARG VAL SEQRES 17 B 317 ILE PRO GLU LEU LYS ARG ILE ASN GLU ASN LEU GLU ASP SEQRES 18 B 317 THR PHE LEU LYS MET VAL LYS VAL LEU ARG ALA GLU ARG SEQRES 19 B 317 GLU PHE LEU GLU GLU GLU ALA GLN LYS LEU TYR LYS GLU SEQRES 20 B 317 VAL LYS LYS GLY ASN CYS LEU ASP VAL LYS LYS LEU LYS SEQRES 21 B 317 GLU LYS PRO LEU ALA LEU GLN ARG ARG VAL ILE ARG LYS SEQRES 22 B 317 PHE ILE GLY GLU LYS ASP TYR GLU LYS VAL GLU LEU VAL SEQRES 23 B 317 ARG SER LEU LEU GLU LYS GLY GLY GLU VAL ASN LEU GLY SEQRES 24 B 317 LYS GLY LYS VAL LEU LYS ARG LYS GLU ARG TRP LEU CYS SEQRES 25 B 317 PHE SER PRO GLU VAL SEQRES 1 C 317 MET ASN PRO GLU SER ARG VAL ILE ARG LYS VAL LEU ALA SEQRES 2 C 317 LEU GLN ASN ASP GLU LYS ILE PHE SER GLY GLU ARG ARG SEQRES 3 C 317 VAL LEU ILE ALA PHE SER GLY GLY VAL ASP SER VAL VAL SEQRES 4 C 317 LEU THR ASP VAL LEU LEU LYS LEU LYS ASN TYR PHE SER SEQRES 5 C 317 LEU LYS GLU VAL ALA LEU ALA HIS PHE ASN HIS MET LEU SEQRES 6 C 317 ARG GLU SER ALA GLU ARG ASP GLU GLU PHE CYS LYS GLU SEQRES 7 C 317 PHE ALA LYS GLU ARG ASN MET LYS ILE PHE VAL GLY LYS SEQRES 8 C 317 GLU ASP VAL ARG ALA PHE ALA LYS GLU ASN ARG MET SER SEQRES 9 C 317 LEU GLU GLU ALA GLY ARG PHE LEU ARG TYR LYS PHE LEU SEQRES 10 C 317 LYS GLU ILE LEU GLU SER GLU GLY PHE ASP CYS ILE ALA SEQRES 11 C 317 THR ALA HIS HIS LEU ASN ASP LEU LEU GLU THR SER LEU SEQRES 12 C 317 LEU PHE PHE THR ARG GLY THR GLY LEU ASP GLY LEU ILE SEQRES 13 C 317 GLY PHE LEU PRO LYS GLU GLU VAL ILE ARG ARG PRO LEU SEQRES 14 C 317 TYR TYR VAL LYS ARG SER GLU ILE GLU GLU TYR ALA LYS SEQRES 15 C 317 PHE LYS GLY LEU ARG TRP VAL GLU ASP GLU THR ASN TYR SEQRES 16 C 317 GLU VAL SER ILE PRO ARG ASN ARG ILE ARG HIS ARG VAL SEQRES 17 C 317 ILE PRO GLU LEU LYS ARG ILE ASN GLU ASN LEU GLU ASP SEQRES 18 C 317 THR PHE LEU LYS MET VAL LYS VAL LEU ARG ALA GLU ARG SEQRES 19 C 317 GLU PHE LEU GLU GLU GLU ALA GLN LYS LEU TYR LYS GLU SEQRES 20 C 317 VAL LYS LYS GLY ASN CYS LEU ASP VAL LYS LYS LEU LYS SEQRES 21 C 317 GLU LYS PRO LEU ALA LEU GLN ARG ARG VAL ILE ARG LYS SEQRES 22 C 317 PHE ILE GLY GLU LYS ASP TYR GLU LYS VAL GLU LEU VAL SEQRES 23 C 317 ARG SER LEU LEU GLU LYS GLY GLY GLU VAL ASN LEU GLY SEQRES 24 C 317 LYS GLY LYS VAL LEU LYS ARG LYS GLU ARG TRP LEU CYS SEQRES 25 C 317 PHE SER PRO GLU VAL SEQRES 1 D 317 MET ASN PRO GLU SER ARG VAL ILE ARG LYS VAL LEU ALA SEQRES 2 D 317 LEU GLN ASN ASP GLU LYS ILE PHE SER GLY GLU ARG ARG SEQRES 3 D 317 VAL LEU ILE ALA PHE SER GLY GLY VAL ASP SER VAL VAL SEQRES 4 D 317 LEU THR ASP VAL LEU LEU LYS LEU LYS ASN TYR PHE SER SEQRES 5 D 317 LEU LYS GLU VAL ALA LEU ALA HIS PHE ASN HIS MET LEU SEQRES 6 D 317 ARG GLU SER ALA GLU ARG ASP GLU GLU PHE CYS LYS GLU SEQRES 7 D 317 PHE ALA LYS GLU ARG ASN MET LYS ILE PHE VAL GLY LYS SEQRES 8 D 317 GLU ASP VAL ARG ALA PHE ALA LYS GLU ASN ARG MET SER SEQRES 9 D 317 LEU GLU GLU ALA GLY ARG PHE LEU ARG TYR LYS PHE LEU SEQRES 10 D 317 LYS GLU ILE LEU GLU SER GLU GLY PHE ASP CYS ILE ALA SEQRES 11 D 317 THR ALA HIS HIS LEU ASN ASP LEU LEU GLU THR SER LEU SEQRES 12 D 317 LEU PHE PHE THR ARG GLY THR GLY LEU ASP GLY LEU ILE SEQRES 13 D 317 GLY PHE LEU PRO LYS GLU GLU VAL ILE ARG ARG PRO LEU SEQRES 14 D 317 TYR TYR VAL LYS ARG SER GLU ILE GLU GLU TYR ALA LYS SEQRES 15 D 317 PHE LYS GLY LEU ARG TRP VAL GLU ASP GLU THR ASN TYR SEQRES 16 D 317 GLU VAL SER ILE PRO ARG ASN ARG ILE ARG HIS ARG VAL SEQRES 17 D 317 ILE PRO GLU LEU LYS ARG ILE ASN GLU ASN LEU GLU ASP SEQRES 18 D 317 THR PHE LEU LYS MET VAL LYS VAL LEU ARG ALA GLU ARG SEQRES 19 D 317 GLU PHE LEU GLU GLU GLU ALA GLN LYS LEU TYR LYS GLU SEQRES 20 D 317 VAL LYS LYS GLY ASN CYS LEU ASP VAL LYS LYS LEU LYS SEQRES 21 D 317 GLU LYS PRO LEU ALA LEU GLN ARG ARG VAL ILE ARG LYS SEQRES 22 D 317 PHE ILE GLY GLU LYS ASP TYR GLU LYS VAL GLU LEU VAL SEQRES 23 D 317 ARG SER LEU LEU GLU LYS GLY GLY GLU VAL ASN LEU GLY SEQRES 24 D 317 LYS GLY LYS VAL LEU LYS ARG LYS GLU ARG TRP LEU CYS SEQRES 25 D 317 PHE SER PRO GLU VAL HET ANP A 500 31 HET ANP C 501 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 7 HOH *180(H2 O) HELIX 1 1 ASN A 2 LYS A 19 1 18 HELIX 2 2 GLY A 34 LYS A 48 1 15 HELIX 3 3 SER A 68 ARG A 83 1 16 HELIX 4 4 ASP A 93 ALA A 98 1 6 HELIX 5 5 SER A 104 GLY A 125 1 22 HELIX 6 6 HIS A 134 ARG A 148 1 15 HELIX 7 7 GLY A 151 GLY A 157 1 7 HELIX 8 8 LYS A 173 LYS A 184 1 12 HELIX 9 9 GLU A 192 GLU A 196 5 5 HELIX 10 10 ILE A 199 VAL A 208 1 10 HELIX 11 11 VAL A 208 ASN A 216 1 9 HELIX 12 12 ASN A 218 VAL A 248 1 31 HELIX 13 13 VAL A 256 LYS A 260 1 5 HELIX 14 14 PRO A 263 GLY A 276 1 14 HELIX 15 15 ASP A 279 SER A 288 1 10 HELIX 16 16 LEU A 289 GLU A 291 5 3 HELIX 17 17 ASN B 2 LYS B 19 1 18 HELIX 18 18 GLY B 34 LYS B 48 1 15 HELIX 19 19 SER B 68 ARG B 83 1 16 HELIX 20 20 ASP B 93 ASN B 101 1 9 HELIX 21 21 SER B 104 GLY B 125 1 22 HELIX 22 22 HIS B 134 GLY B 149 1 16 HELIX 23 23 GLY B 151 GLY B 157 1 7 HELIX 24 24 LYS B 173 LYS B 184 1 12 HELIX 25 25 ILE B 199 ARG B 207 1 9 HELIX 26 26 ARG B 207 ARG B 214 1 8 HELIX 27 27 ASN B 218 LYS B 246 1 29 HELIX 28 28 ASP B 255 LYS B 262 1 8 HELIX 29 29 PRO B 263 GLY B 276 1 14 HELIX 30 30 ASP B 279 LEU B 289 1 11 HELIX 31 31 ASN C 2 LYS C 19 1 18 HELIX 32 32 GLY C 34 LYS C 48 1 15 HELIX 33 33 GLU C 67 ASN C 84 1 18 HELIX 34 34 ASP C 93 ASN C 101 1 9 HELIX 35 35 SER C 104 GLY C 125 1 22 HELIX 36 36 HIS C 134 GLY C 149 1 16 HELIX 37 37 GLY C 151 GLY C 157 1 7 HELIX 38 38 LYS C 173 LYS C 184 1 12 HELIX 39 39 GLU C 192 GLU C 196 5 5 HELIX 40 40 ILE C 199 VAL C 208 1 10 HELIX 41 41 VAL C 208 LYS C 213 1 6 HELIX 42 42 ASN C 218 GLU C 247 1 30 HELIX 43 43 ASP C 255 GLU C 261 1 7 HELIX 44 44 PRO C 263 GLY C 276 1 14 HELIX 45 45 ASP C 279 ARG C 287 1 9 HELIX 46 46 SER C 288 GLU C 291 5 4 HELIX 47 47 ASN D 2 LYS D 19 1 18 HELIX 48 48 GLY D 34 LEU D 47 1 14 HELIX 49 49 GLU D 67 ARG D 83 1 17 HELIX 50 50 ASP D 93 ASN D 101 1 9 HELIX 51 51 SER D 104 GLU D 124 1 21 HELIX 52 52 HIS D 134 GLY D 149 1 16 HELIX 53 53 GLY D 151 GLY D 157 1 7 HELIX 54 54 LYS D 173 LYS D 184 1 12 HELIX 55 55 ILE D 199 ARG D 207 1 9 HELIX 56 56 ARG D 207 LYS D 213 1 7 HELIX 57 57 ASN D 218 VAL D 248 1 31 HELIX 58 58 ASP D 255 GLU D 261 1 7 HELIX 59 59 PRO D 263 GLY D 276 1 14 HELIX 60 60 ASP D 279 SER D 288 1 10 HELIX 61 61 LEU D 289 GLU D 291 5 3 SHEET 1 A 6 ILE A 87 LYS A 91 0 SHEET 2 A 6 GLU A 55 ASN A 62 1 N ASN A 62 O GLY A 90 SHEET 3 A 6 ARG A 26 ALA A 30 1 N ILE A 29 O ALA A 57 SHEET 4 A 6 CYS A 128 ALA A 130 1 O ALA A 130 N ALA A 30 SHEET 5 A 6 ILE A 165 ARG A 166 1 O ARG A 166 N ILE A 129 SHEET 6 A 6 LYS A 161 GLU A 162 -1 N GLU A 162 O ILE A 165 SHEET 1 B 5 LYS A 249 LYS A 250 0 SHEET 2 B 5 CYS A 253 ASP A 255 -1 O CYS A 253 N LYS A 250 SHEET 3 B 5 TRP A 310 PHE A 313 -1 O LEU A 311 N LEU A 254 SHEET 4 B 5 VAL A 303 LYS A 307 -1 N LYS A 305 O CYS A 312 SHEET 5 B 5 GLU A 295 ASN A 297 -1 N VAL A 296 O LEU A 304 SHEET 1 C 6 ILE B 87 LYS B 91 0 SHEET 2 C 6 GLU B 55 ASN B 62 1 N ASN B 62 O GLY B 90 SHEET 3 C 6 ARG B 26 ALA B 30 1 N ILE B 29 O ALA B 57 SHEET 4 C 6 CYS B 128 ALA B 130 1 O ALA B 130 N LEU B 28 SHEET 5 C 6 ILE B 165 ARG B 166 1 O ARG B 166 N ILE B 129 SHEET 6 C 6 LYS B 161 GLU B 162 -1 N GLU B 162 O ILE B 165 SHEET 1 D 3 GLU B 295 ASN B 297 0 SHEET 2 D 3 VAL B 303 ARG B 306 -1 O LEU B 304 N VAL B 296 SHEET 3 D 3 LEU B 311 PHE B 313 -1 O CYS B 312 N LYS B 305 SHEET 1 E 6 ILE C 87 LYS C 91 0 SHEET 2 E 6 GLU C 55 ASN C 62 1 N HIS C 60 O PHE C 88 SHEET 3 E 6 ARG C 26 ALA C 30 1 N VAL C 27 O GLU C 55 SHEET 4 E 6 CYS C 128 ALA C 130 1 O ALA C 130 N ALA C 30 SHEET 5 E 6 ILE C 165 ARG C 166 1 O ARG C 166 N ILE C 129 SHEET 6 E 6 LYS C 161 GLU C 162 -1 N GLU C 162 O ILE C 165 SHEET 1 F 3 CYS C 253 LEU C 254 0 SHEET 2 F 3 LEU C 311 PHE C 313 -1 O LEU C 311 N LEU C 254 SHEET 3 F 3 LEU C 304 ARG C 306 -1 N LYS C 305 O CYS C 312 SHEET 1 G 6 LYS D 86 LYS D 91 0 SHEET 2 G 6 GLU D 55 ASN D 62 1 N ASN D 62 O GLY D 90 SHEET 3 G 6 ARG D 26 ALA D 30 1 N ILE D 29 O ALA D 57 SHEET 4 G 6 CYS D 128 ALA D 130 1 O ALA D 130 N LEU D 28 SHEET 5 G 6 ILE D 165 ARG D 166 1 O ARG D 166 N ILE D 129 SHEET 6 G 6 LYS D 161 GLU D 162 -1 N GLU D 162 O ILE D 165 SHEET 1 H 5 LYS D 249 LYS D 250 0 SHEET 2 H 5 CYS D 253 LEU D 254 -1 O CYS D 253 N LYS D 250 SHEET 3 H 5 LEU D 311 PHE D 313 -1 O LEU D 311 N LEU D 254 SHEET 4 H 5 VAL D 303 ARG D 306 -1 N LYS D 305 O CYS D 312 SHEET 5 H 5 GLU D 295 ASN D 297 -1 N VAL D 296 O LEU D 304 SSBOND 1 CYS A 253 CYS A 312 1555 1555 2.04 SSBOND 2 CYS B 253 CYS B 312 1555 1555 2.03 SSBOND 3 CYS C 253 CYS C 312 1555 1555 2.06 SSBOND 4 CYS D 253 CYS D 312 1555 1555 2.03 SITE 1 AC1 13 ALA A 30 PHE A 31 SER A 32 ALA A 59 SITE 2 AC1 13 PHE A 61 GLU A 106 ARG A 110 ARG A 113 SITE 3 AC1 13 TYR A 114 THR A 131 ALA A 132 HIS A 133 SITE 4 AC1 13 ARG A 201 SITE 1 AC2 12 ALA C 30 PHE C 31 SER C 32 ALA C 59 SITE 2 AC2 12 HIS C 60 PHE C 61 ARG C 110 ARG C 113 SITE 3 AC2 12 THR C 131 ALA C 132 HIS C 133 HOH C 552 CRYST1 94.456 82.231 109.431 90.00 105.85 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010587 0.000000 0.003006 0.00000 SCALE2 0.000000 0.012161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009499 0.00000