HEADER TRANSFERASE 09-NOV-06 2E28 TITLE CRYSTAL STRUCTURE ANALYSIS OF PYRUVATE KINASE FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS CAVEAT 2E28 CHIRALITY ERROR AT CA CENTER OF PRO 162 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PK; COMPND 5 EC: 2.7.1.40; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYRUVATE KINASE, ALLOSTERIC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SUZUKI REVDAT 5 25-OCT-23 2E28 1 REMARK REVDAT 4 10-NOV-21 2E28 1 REMARK SEQADV REVDAT 3 24-FEB-09 2E28 1 VERSN REVDAT 2 04-NOV-08 2E28 1 JRNL REVDAT 1 05-FEB-08 2E28 0 JRNL AUTH K.SUZUKI,S.ITO,A.SHIMIZU-IBUKA,H.SAKAI JRNL TITL CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM GEOBACILLUS JRNL TITL 2 STEAROTHERMOPHILUS. JRNL REF J.BIOCHEM. V. 144 305 2008 JRNL REFN ISSN 0021-924X JRNL PMID 18511452 JRNL DOI 10.1093/JB/MVN069 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 25640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2539 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000026134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1PKY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M AMMONIUM SULFATE, 0.1M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.68667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.34333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.68667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.34333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.68667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 39.34333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.68667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.34333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 87810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.98500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 126.41373 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 78.68667 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 72.98500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 126.41373 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 78.68667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 727 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 ASP A 115 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 194 NH2 ARG A 196 1.47 REMARK 500 CG PRO A 162 CD GLU A 251 1.86 REMARK 500 CG PRO A 162 OE2 GLU A 251 1.89 REMARK 500 NH2 ARG A 197 O HOH A 642 1.97 REMARK 500 O HOH A 679 O HOH A 726 2.09 REMARK 500 CZ ARG A 197 O HOH A 642 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 737 O HOH A 737 12566 1.53 REMARK 500 OG SER A 364 OG SER A 364 10665 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 33 C LEU A 34 N -0.303 REMARK 500 LYS A 104 C ILE A 105 N -0.226 REMARK 500 ASN A 167 C LEU A 168 N -0.151 REMARK 500 ARG A 184 C GLN A 185 N -0.211 REMARK 500 ARG A 196 C ARG A 197 N -0.338 REMARK 500 VAL A 426 C ASN A 427 N -0.144 REMARK 500 ARG A 486 C LYS A 487 N -0.211 REMARK 500 ALA A 499 C GLU A 500 N -0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 O - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 LEU A 34 C - N - CA ANGL. DEV. = 26.1 DEGREES REMARK 500 ARG A 57 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 GLU A 72 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 LYS A 104 CA - C - N ANGL. DEV. = 16.5 DEGREES REMARK 500 LYS A 104 O - C - N ANGL. DEV. = -18.6 DEGREES REMARK 500 ASP A 126 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 PRO A 162 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 GLY A 163 C - N - CA ANGL. DEV. = 26.4 DEGREES REMARK 500 ASN A 167 CA - C - N ANGL. DEV. = 14.8 DEGREES REMARK 500 ASN A 167 O - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 PRO A 169 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 PRO A 169 C - N - CD ANGL. DEV. = 18.3 DEGREES REMARK 500 PRO A 169 CA - N - CD ANGL. DEV. = -8.6 DEGREES REMARK 500 PHE A 194 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 197 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 HIS A 215 CA - C - N ANGL. DEV. = -19.1 DEGREES REMARK 500 HIS A 215 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 ASN A 427 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 486 CB - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 ARG A 486 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 ILE A 554 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 72 139.96 177.04 REMARK 500 HIS A 76 -158.82 -88.22 REMARK 500 MET A 78 79.84 -101.75 REMARK 500 GLU A 79 90.32 28.09 REMARK 500 ASN A 80 -43.93 66.90 REMARK 500 GLU A 84 -81.27 -108.72 REMARK 500 LEU A 85 118.07 72.85 REMARK 500 LYS A 86 -162.55 -106.10 REMARK 500 SER A 89 152.18 57.56 REMARK 500 LYS A 90 79.96 -105.93 REMARK 500 PRO A 102 -10.81 -48.89 REMARK 500 PRO A 110 -6.16 -50.15 REMARK 500 ASP A 114 47.46 -99.63 REMARK 500 ASP A 115 -40.60 -169.54 REMARK 500 ASP A 126 48.59 32.08 REMARK 500 LEU A 128 -74.04 -56.93 REMARK 500 ASN A 134 -78.31 -69.73 REMARK 500 ASP A 137 79.12 -66.57 REMARK 500 GLN A 139 -74.26 -65.67 REMARK 500 LEU A 148 -102.24 -102.34 REMARK 500 LYS A 156 60.24 38.99 REMARK 500 LEU A 214 16.16 -57.90 REMARK 500 THR A 279 150.88 67.30 REMARK 500 MET A 281 -68.29 -97.02 REMARK 500 SER A 313 -105.48 -113.13 REMARK 500 GLU A 352 7.21 53.77 REMARK 500 ARG A 394 59.68 39.25 REMARK 500 PRO A 459 -73.64 -13.96 REMARK 500 VAL A 460 -35.89 113.64 REMARK 500 SER A 475 153.81 -41.37 REMARK 500 PHE A 490 -91.84 -116.95 REMARK 500 GLU A 535 -140.33 -83.67 REMARK 500 GLU A 558 -72.87 -22.16 REMARK 500 PHE A 576 -33.30 80.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 72 -11.65 REMARK 500 VAL A 161 12.45 REMARK 500 PRO A 162 -17.86 REMARK 500 LEU A 214 -15.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 588 DBREF 2E28 A 1 587 UNP Q02499 KPYK_BACST 1 587 SEQADV 2E28 SER A 9 UNP Q02499 CYS 9 ENGINEERED MUTATION SEQADV 2E28 SER A 268 UNP Q02499 CYS 268 ENGINEERED MUTATION SEQRES 1 A 587 MET LYS ARG LYS THR LYS ILE VAL SER THR ILE GLY PRO SEQRES 2 A 587 ALA SER GLU SER VAL ASP LYS LEU VAL GLN LEU MET GLU SEQRES 3 A 587 ALA GLY MET ASN VAL ALA ARG LEU ASN PHE SER HIS GLY SEQRES 4 A 587 ASP HIS GLU GLU HIS GLY ARG ARG ILE ALA ASN ILE ARG SEQRES 5 A 587 GLU ALA ALA LYS ARG THR GLY ARG THR VAL ALA ILE LEU SEQRES 6 A 587 LEU ASP THR LYS GLY PRO GLU ILE ARG THR HIS ASN MET SEQRES 7 A 587 GLU ASN GLY ALA ILE GLU LEU LYS GLU GLY SER LYS LEU SEQRES 8 A 587 VAL ILE SER MET SER GLU VAL LEU GLY THR PRO GLU LYS SEQRES 9 A 587 ILE SER VAL THR TYR PRO SER LEU ILE ASP ASP VAL SER SEQRES 10 A 587 VAL GLY ALA LYS ILE LEU LEU ASP ASP GLY LEU ILE SER SEQRES 11 A 587 LEU GLU VAL ASN ALA VAL ASP LYS GLN ALA GLY GLU ILE SEQRES 12 A 587 VAL THR THR VAL LEU ASN GLY GLY VAL LEU LYS ASN LYS SEQRES 13 A 587 LYS GLY VAL ASN VAL PRO GLY VAL LYS VAL ASN LEU PRO SEQRES 14 A 587 GLY ILE THR GLU LYS ASP ARG ALA ASP ILE LEU PHE GLY SEQRES 15 A 587 ILE ARG GLN GLY ILE ASP PHE ILE ALA ALA SER PHE VAL SEQRES 16 A 587 ARG ARG ALA SER ASP VAL LEU GLU ILE ARG GLU LEU LEU SEQRES 17 A 587 GLU ALA HIS ASP ALA LEU HIS ILE GLN ILE ILE ALA LYS SEQRES 18 A 587 ILE GLU ASN GLU GLU GLY VAL ALA ASN ILE ASP GLU ILE SEQRES 19 A 587 LEU GLU ALA ALA ASP GLY LEU MET VAL ALA ARG GLY ASP SEQRES 20 A 587 LEU GLY VAL GLU ILE PRO ALA GLU GLU VAL PRO LEU ILE SEQRES 21 A 587 GLN LYS LEU LEU ILE LYS LYS SER ASN MET LEU GLY LYS SEQRES 22 A 587 PRO VAL ILE THR ALA THR GLN MET LEU ASP SER MET GLN SEQRES 23 A 587 ARG ASN PRO ARG PRO THR ARG ALA GLU ALA SER ASP VAL SEQRES 24 A 587 ALA ASN ALA ILE PHE ASP GLY THR ASP ALA VAL MET LEU SEQRES 25 A 587 SER GLY GLU THR ALA ALA GLY GLN TYR PRO VAL GLU ALA SEQRES 26 A 587 VAL LYS THR MET HIS GLN ILE ALA LEU ARG THR GLU GLN SEQRES 27 A 587 ALA LEU GLU HIS ARG ASP ILE LEU SER GLN ARG THR LYS SEQRES 28 A 587 GLU SER GLN THR THR ILE THR ASP ALA ILE GLY GLN SER SEQRES 29 A 587 VAL ALA HIS THR ALA LEU ASN LEU ASP VAL ALA ALA ILE SEQRES 30 A 587 VAL THR PRO THR VAL SER GLY LYS THR PRO GLN MET VAL SEQRES 31 A 587 ALA LYS TYR ARG PRO LYS ALA PRO ILE ILE ALA VAL THR SEQRES 32 A 587 SER ASN GLU ALA VAL SER ARG ARG LEU ALA LEU VAL TRP SEQRES 33 A 587 GLY VAL TYR THR LYS GLU ALA PRO HIS VAL ASN THR THR SEQRES 34 A 587 ASP GLU MET LEU ASP VAL ALA VAL ASP ALA ALA VAL ARG SEQRES 35 A 587 SER GLY LEU VAL LYS HIS GLY ASP LEU VAL VAL ILE THR SEQRES 36 A 587 ALA GLY VAL PRO VAL GLY GLU THR GLY SER THR ASN LEU SEQRES 37 A 587 MET LYS VAL HIS VAL ILE SER ASP LEU LEU ALA LYS GLY SEQRES 38 A 587 GLN GLY ILE GLY ARG LYS SER ALA PHE GLY LYS ALA VAL SEQRES 39 A 587 VAL ALA LYS THR ALA GLU GLU ALA ARG GLN LYS MET VAL SEQRES 40 A 587 ASP GLY GLY ILE LEU VAL THR VAL SER THR ASP ALA ASP SEQRES 41 A 587 MET MET PRO ALA ILE GLU LYS ALA ALA ALA ILE ILE THR SEQRES 42 A 587 GLU GLU GLY GLY LEU THR SER HIS ALA ALA VAL VAL GLY SEQRES 43 A 587 LEU SER LEU GLY ILE PRO VAL ILE VAL GLY VAL GLU ASN SEQRES 44 A 587 ALA THR THR LEU PHE LYS ASP GLY GLN GLU ILE THR VAL SEQRES 45 A 587 ASP GLY GLY PHE GLY ALA VAL TYR ARG GLY HIS ALA SER SEQRES 46 A 587 VAL LEU HET SO4 A 588 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *153(H2 O) HELIX 1 1 SER A 17 GLY A 28 1 12 HELIX 2 2 ASP A 40 THR A 58 1 19 HELIX 3 3 THR A 172 GLY A 186 1 15 HELIX 4 4 ARG A 197 HIS A 211 1 15 HELIX 5 5 ASN A 224 ASN A 230 1 7 HELIX 6 6 ASN A 230 ALA A 238 1 9 HELIX 7 7 ARG A 245 ILE A 252 1 8 HELIX 8 8 PRO A 253 GLU A 255 5 3 HELIX 9 9 GLU A 256 GLY A 272 1 17 HELIX 10 10 LEU A 282 ARG A 287 5 6 HELIX 11 11 THR A 292 GLY A 306 1 15 HELIX 12 12 SER A 313 ALA A 318 1 6 HELIX 13 13 TYR A 321 GLN A 338 1 18 HELIX 14 14 GLU A 341 LYS A 351 1 11 HELIX 15 15 THR A 356 LEU A 372 1 17 HELIX 16 16 GLY A 384 TYR A 393 1 10 HELIX 17 17 ASN A 405 LEU A 412 1 8 HELIX 18 18 ALA A 413 VAL A 415 5 3 HELIX 19 19 THR A 428 GLY A 444 1 17 HELIX 20 20 THR A 498 MET A 506 1 9 HELIX 21 21 ASP A 518 ASP A 520 5 3 HELIX 22 22 MET A 521 GLU A 526 1 6 HELIX 23 23 SER A 540 GLY A 550 1 11 HELIX 24 24 ASN A 559 PHE A 564 1 6 SHEET 1 A 9 LYS A 6 THR A 10 0 SHEET 2 A 9 MET A 29 ASN A 35 1 O ARG A 33 N SER A 9 SHEET 3 A 9 ALA A 63 ASP A 67 1 O LEU A 65 N ALA A 32 SHEET 4 A 9 PHE A 189 ALA A 192 1 O PHE A 189 N ILE A 64 SHEET 5 A 9 GLN A 217 ILE A 222 1 O ILE A 219 N ILE A 190 SHEET 6 A 9 GLY A 240 ALA A 244 1 O MET A 242 N ALA A 220 SHEET 7 A 9 VAL A 275 ALA A 278 1 O ILE A 276 N VAL A 243 SHEET 8 A 9 ALA A 309 LEU A 312 1 O ALA A 309 N THR A 277 SHEET 9 A 9 LYS A 6 THR A 10 1 N VAL A 8 O LEU A 312 SHEET 1 B 6 LYS A 104 SER A 106 0 SHEET 2 B 6 LYS A 90 SER A 94 1 N SER A 94 O ILE A 105 SHEET 3 B 6 GLU A 142 THR A 146 -1 O ILE A 143 N ILE A 93 SHEET 4 B 6 ILE A 129 ASP A 137 -1 N ALA A 135 O VAL A 144 SHEET 5 B 6 LYS A 121 LEU A 124 -1 N LEU A 124 O ILE A 129 SHEET 6 B 6 VAL A 159 ASN A 160 -1 O ASN A 160 N LEU A 123 SHEET 1 C 5 VAL A 418 GLU A 422 0 SHEET 2 C 5 ILE A 399 THR A 403 1 N ILE A 399 O TYR A 419 SHEET 3 C 5 ALA A 376 PRO A 380 1 N THR A 379 O ILE A 400 SHEET 4 C 5 LEU A 451 ALA A 456 1 O VAL A 453 N ALA A 376 SHEET 5 C 5 LEU A 468 VAL A 473 -1 O LYS A 470 N ILE A 454 SHEET 1 D 4 LEU A 477 LYS A 480 0 SHEET 2 D 4 ALA A 578 ARG A 581 -1 O VAL A 579 N ALA A 479 SHEET 3 D 4 ILE A 570 ASP A 573 -1 N ASP A 573 O ALA A 578 SHEET 4 D 4 SER A 488 ALA A 489 -1 N ALA A 489 O VAL A 572 SHEET 1 E 5 GLN A 482 ILE A 484 0 SHEET 2 E 5 VAL A 553 VAL A 555 -1 O VAL A 553 N ILE A 484 SHEET 3 E 5 ALA A 530 THR A 533 1 N ILE A 531 O ILE A 554 SHEET 4 E 5 ILE A 511 THR A 514 1 N LEU A 512 O ILE A 532 SHEET 5 E 5 ALA A 493 VAL A 495 1 N VAL A 494 O ILE A 511 CISPEP 1 VAL A 458 PRO A 459 0 0.19 SITE 1 AC1 10 THR A 381 VAL A 382 SER A 383 GLY A 384 SITE 2 AC1 10 LYS A 385 THR A 386 THR A 463 GLY A 464 SITE 3 AC1 10 HOH A 621 HOH A 692 CRYST1 145.970 145.970 118.030 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006851 0.003955 0.000000 0.00000 SCALE2 0.000000 0.007911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008472 0.00000