HEADER LIGASE 17-NOV-06 2E2W TITLE SOLUTION STRUCTURE OF THE FIRST BRCT DOMAIN OF HUMAN DNA LIGASE IV COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN; COMPND 5 SYNONYM: DNA LIGASE IV, POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP] 4; COMPND 6 EC: 6.5.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIG4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060731-14; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS 3LAYERS A/B/A, PARALLEL BETA-SHEET OF 4 STRANDS, XRCC4, NON- KEYWDS 2 HOMOLOGOUS END JOINTING, V(D)J RECOMBINATION, STRUCTURAL GENOMICS, KEYWDS 3 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2E2W 1 REMARK REVDAT 3 09-MAR-22 2E2W 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E2W 1 VERSN REVDAT 1 05-DEC-06 2E2W 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST BRCT DOMAIN OF HUMAN DNA JRNL TITL 2 LIGASE IV JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E2W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000026156. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM UNIFORMLY 13C AND 15N REMARK 210 LABELLED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3, REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9816, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 30 17.27 -69.74 REMARK 500 1 ASP A 50 44.29 -109.70 REMARK 500 1 CYS A 101 161.00 -42.87 REMARK 500 2 PRO A 28 -179.26 -69.75 REMARK 500 2 PRO A 30 8.02 -69.82 REMARK 500 2 ASP A 50 44.24 -109.25 REMARK 500 2 TRP A 79 -35.99 -39.16 REMARK 500 3 SER A 3 107.98 -54.06 REMARK 500 3 SER A 5 149.15 -38.20 REMARK 500 3 PRO A 28 -178.46 -69.79 REMARK 500 3 PRO A 30 6.64 -69.77 REMARK 500 3 ASP A 50 42.31 -104.55 REMARK 500 3 TRP A 79 -39.05 -39.24 REMARK 500 3 CYS A 101 159.12 -49.07 REMARK 500 4 SER A 5 135.24 -171.39 REMARK 500 4 PRO A 28 -178.78 -69.76 REMARK 500 4 PRO A 30 8.46 -69.79 REMARK 500 4 ASP A 50 42.12 -104.26 REMARK 500 4 PRO A 77 2.85 -69.71 REMARK 500 4 PRO A 91 -164.33 -69.78 REMARK 500 4 CYS A 101 162.91 -44.00 REMARK 500 5 SER A 5 94.99 -44.36 REMARK 500 5 PRO A 30 15.03 -69.80 REMARK 500 5 ASP A 50 43.68 -107.16 REMARK 500 5 LYS A 71 -53.31 -120.75 REMARK 500 5 PRO A 77 0.55 -69.74 REMARK 500 5 PRO A 91 -175.80 -69.78 REMARK 500 5 CYS A 101 161.40 -48.56 REMARK 500 6 PRO A 30 14.73 -69.72 REMARK 500 6 ASP A 50 44.98 -109.94 REMARK 500 6 ASN A 70 44.71 35.98 REMARK 500 6 HIS A 99 105.03 -163.34 REMARK 500 7 PRO A 30 15.57 -69.76 REMARK 500 7 PHE A 89 101.57 -48.97 REMARK 500 7 CYS A 101 159.26 -44.59 REMARK 500 8 ASP A 15 33.59 71.82 REMARK 500 8 PRO A 30 17.03 -69.70 REMARK 500 8 ASP A 50 43.22 -107.73 REMARK 500 8 TYR A 52 -64.15 -91.50 REMARK 500 8 LYS A 87 43.78 37.82 REMARK 500 8 PRO A 91 -178.28 -69.82 REMARK 500 8 CYS A 101 160.61 -44.53 REMARK 500 9 SER A 2 147.80 -172.78 REMARK 500 9 ASN A 11 48.11 -102.11 REMARK 500 9 ASP A 15 31.89 72.70 REMARK 500 9 PRO A 30 18.16 -69.72 REMARK 500 9 ASP A 50 42.60 -103.94 REMARK 500 9 GLU A 59 91.72 -60.39 REMARK 500 9 MET A 100 -174.88 -52.87 REMARK 500 10 ASN A 11 37.87 -85.09 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000250.1 RELATED DB: TARGETDB DBREF 2E2W A 8 113 UNP P49917 DNL4_HUMAN 654 759 SEQADV 2E2W GLY A 1 UNP P49917 CLONING ARTIFACT SEQADV 2E2W SER A 2 UNP P49917 CLONING ARTIFACT SEQADV 2E2W SER A 3 UNP P49917 CLONING ARTIFACT SEQADV 2E2W GLY A 4 UNP P49917 CLONING ARTIFACT SEQADV 2E2W SER A 5 UNP P49917 CLONING ARTIFACT SEQADV 2E2W SER A 6 UNP P49917 CLONING ARTIFACT SEQADV 2E2W GLY A 7 UNP P49917 CLONING ARTIFACT SEQRES 1 A 113 GLY SER SER GLY SER SER GLY LYS ILE SER ASN ILE PHE SEQRES 2 A 113 GLU ASP VAL GLU PHE CYS VAL MET SER GLY THR ASP SER SEQRES 3 A 113 GLN PRO LYS PRO ASP LEU GLU ASN ARG ILE ALA GLU PHE SEQRES 4 A 113 GLY GLY TYR ILE VAL GLN ASN PRO GLY PRO ASP THR TYR SEQRES 5 A 113 CYS VAL ILE ALA GLY SER GLU ASN ILE ARG VAL LYS ASN SEQRES 6 A 113 ILE ILE LEU SER ASN LYS HIS ASP VAL VAL LYS PRO ALA SEQRES 7 A 113 TRP LEU LEU GLU CYS PHE LYS THR LYS SER PHE VAL PRO SEQRES 8 A 113 TRP GLN PRO ARG PHE MET ILE HIS MET CYS PRO SER THR SEQRES 9 A 113 LYS GLU HIS PHE ALA ARG GLU TYR ASP HELIX 1 1 PRO A 28 PHE A 39 1 12 HELIX 2 2 ASN A 60 ASN A 70 1 11 HELIX 3 3 LYS A 76 LYS A 87 1 12 HELIX 4 4 THR A 104 ASP A 113 1 10 SHEET 1 A 5 GLY A 41 VAL A 44 0 SHEET 2 A 5 VAL A 16 SER A 22 1 N VAL A 16 O TYR A 42 SHEET 3 A 5 VAL A 54 ALA A 56 1 O ILE A 55 N CYS A 19 SHEET 4 A 5 VAL A 74 VAL A 75 1 O VAL A 75 N ALA A 56 SHEET 5 A 5 MET A 97 HIS A 99 -1 O ILE A 98 N VAL A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1