HEADER LIGASE 20-NOV-06 2E31 TITLE STRUCTURAL BASIS FOR SELECTION OF GLYCOSYLATED SUBSTRATE BY SCFFBS1 TITLE 2 UBIQUITIN LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX ONLY PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FBS1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: S-PHASE KINASE-ASSOCIATED PROTEIN 1A; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CYCLIN A/CDK2-ASSOCIATED PROTEIN P19, P19A, P19SKP1, RNA COMPND 10 POLYMERASE II ELONGATION FACTOR-LIKE PROTEIN, ORGAN OF CORTI PROTEIN COMPND 11 2, OCP-II PROTEIN, OCP-2, TRANSCRIPTION ELONGATION FACTOR B, SIII, COMPND 12 SKP1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(RIL); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(RIL); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS UBIQUITIN, SCF, UBIQUITIN LIGASE, FBS1, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MIZUSHIMA,Y.YOSHIDA,T.KUMANOMIDOU,Y.HASEGAWA,T.YAMANE,K.TANAKA REVDAT 4 25-OCT-23 2E31 1 SEQADV REVDAT 3 24-FEB-09 2E31 1 VERSN REVDAT 2 17-APR-07 2E31 1 JRNL REVDAT 1 20-MAR-07 2E31 0 JRNL AUTH T.MIZUSHIMA,Y.YOSHIDA,T.KUMANOMIDOU,Y.HASEGAWA,A.SUZUKI, JRNL AUTH 2 T.YAMANE,K.TANAKA JRNL TITL STRUCTURAL BASIS FOR THE SELECTION OF GLYCOSYLATED JRNL TITL 2 SUBSTRATES BY SCFFBS1 UBIQUITIN LIGASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 5777 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17389369 JRNL DOI 10.1073/PNAS.0610312104 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 26521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1425 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1846 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.267 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3126 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4244 ; 1.351 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 6.382 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;38.366 ;25.159 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;19.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.142 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2389 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1431 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2110 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1919 ; 0.656 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3042 ; 1.226 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 1.406 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1202 ; 2.425 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2E31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000026161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27964 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 109.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR-AS, MOLECULAR REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: PDB ENTRY 1LDK AND 1UMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULPHATE, 0.1M SODIUM REMARK 280 CITRATE, 30MM CHITOBIOSE, PH 5.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.23600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.61800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.61800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.23600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THIS MOLECULE IS A PART OF THE SCF COMPLEX, WHICH IS A REMARK 300 HETERO TETRAMER GENERATED BY SKP1-FBS1-CUL1-RBX1. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 PRO A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 HIS A 12 REMARK 465 PRO A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 GLN A 21 REMARK 465 PRO A 22 REMARK 465 GLU A 23 REMARK 465 GLU A 24 REMARK 465 ALA A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 33 REMARK 465 GLU A 34 REMARK 465 GLN A 35 REMARK 465 LEU A 36 REMARK 465 ARG A 37 REMARK 465 GLU A 38 REMARK 465 ALA A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 GLU A 42 REMARK 465 GLU A 43 REMARK 465 GLU A 44 REMARK 465 ALA A 45 REMARK 465 GLU A 46 REMARK 465 GLU A 104 REMARK 465 GLY A 105 REMARK 465 SER A 106 REMARK 465 ALA A 107 REMARK 465 ASP A 108 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 MET B 36 REMARK 465 ASP B 37 REMARK 465 ASP B 38 REMARK 465 GLU B 39 REMARK 465 GLY B 40 REMARK 465 ASP B 41 REMARK 465 ASP B 42 REMARK 465 PRO B 69 REMARK 465 PRO B 70 REMARK 465 PRO B 71 REMARK 465 PRO B 72 REMARK 465 GLU B 73 REMARK 465 ASP B 74 REMARK 465 ASP B 75 REMARK 465 GLU B 76 REMARK 465 ASN B 77 REMARK 465 LYS B 78 REMARK 465 GLU B 79 REMARK 465 LYS B 80 REMARK 465 ARG B 81 REMARK 465 THR B 82 REMARK 465 GLU B 156 REMARK 465 ASN B 157 REMARK 465 GLN B 158 REMARK 465 TRP B 159 REMARK 465 CYS B 160 REMARK 465 GLU B 161 REMARK 465 GLU B 162 REMARK 465 LYS B 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 133 O GLU A 135 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 34 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 50 -82.56 -100.26 REMARK 500 ALA A 52 -52.17 144.68 REMARK 500 ARG A 111 141.09 -170.86 REMARK 500 ASP A 112 -19.38 -37.46 REMARK 500 HIS A 113 111.42 156.32 REMARK 500 ASP A 136 -93.37 -93.71 REMARK 500 SER A 176 -141.48 -109.62 REMARK 500 ALA A 217 132.26 -172.52 REMARK 500 GLU A 247 -62.46 -11.15 REMARK 500 ASP A 260 54.15 37.14 REMARK 500 ASP B 10 45.86 -95.61 REMARK 500 ALA B 21 49.82 -82.81 REMARK 500 ASP B 33 87.09 58.03 REMARK 500 LEU B 34 106.68 52.84 REMARK 500 ASP B 67 -90.05 -104.88 REMARK 500 ILE B 85 110.05 61.50 REMARK 500 LYS B 94 39.40 -74.84 REMARK 500 LYS B 128 117.10 -36.06 REMARK 500 ARG B 154 -19.06 52.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E32 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 2E33 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH SUGARS DBREF 2E31 A 1 297 UNP Q80UW2 FBX2_MOUSE 1 297 DBREF 2E31 B 1 163 UNP P63208 SKP1_HUMAN 0 162 SEQADV 2E31 LYS A 151 UNP Q80UW2 ARG 151 SEE REMARK 999 SEQADV 2E31 GLY B -2 UNP P63208 CLONING ARTIFACT SEQADV 2E31 PRO B -1 UNP P63208 CLONING ARTIFACT SEQADV 2E31 HIS B 0 UNP P63208 CLONING ARTIFACT SEQRES 1 A 297 MET ASP GLY ASP GLY ASP PRO GLU SER VAL SER HIS PRO SEQRES 2 A 297 GLU GLU ALA SER PRO GLU GLU GLN PRO GLU GLU ALA GLY SEQRES 3 A 297 ALA GLU ALA SER ALA GLU GLU GLU GLN LEU ARG GLU ALA SEQRES 4 A 297 GLU GLU GLU GLU GLU ALA GLU ALA VAL GLU TYR LEU ALA SEQRES 5 A 297 GLU LEU PRO GLU PRO LEU LEU LEU ARG VAL LEU ALA GLU SEQRES 6 A 297 LEU PRO ALA THR GLU LEU VAL GLN ALA CYS ARG LEU VAL SEQRES 7 A 297 CYS LEU ARG TRP LYS GLU LEU VAL ASP GLY ALA PRO LEU SEQRES 8 A 297 TRP LEU LEU LYS CYS GLN GLN GLU GLY LEU VAL PRO GLU SEQRES 9 A 297 GLY SER ALA ASP GLU GLU ARG ASP HIS TRP GLN GLN PHE SEQRES 10 A 297 TYR PHE LEU SER LYS ARG ARG ARG ASN LEU LEU ARG ASN SEQRES 11 A 297 PRO CYS GLY GLU GLU ASP LEU GLU GLY TRP SER ASP VAL SEQRES 12 A 297 GLU HIS GLY GLY ASP GLY TRP LYS VAL GLU GLU LEU PRO SEQRES 13 A 297 GLY ASP ASN GLY VAL GLU PHE THR GLN ASP ASP SER VAL SEQRES 14 A 297 LYS LYS TYR PHE ALA SER SER PHE GLU TRP CYS ARG LYS SEQRES 15 A 297 ALA GLN VAL ILE ASP LEU GLN ALA GLU GLY TYR TRP GLU SEQRES 16 A 297 GLU LEU LEU ASP THR THR GLN PRO ALA ILE VAL VAL LYS SEQRES 17 A 297 ASP TRP TYR SER GLY ARG THR ASP ALA GLY SER LEU TYR SEQRES 18 A 297 GLU LEU THR VAL ARG LEU LEU SER GLU ASN GLU ASP VAL SEQRES 19 A 297 LEU ALA GLU PHE ALA THR GLY GLN VAL ALA VAL PRO GLU SEQRES 20 A 297 ASP GLY SER TRP MET GLU ILE SER HIS THR PHE ILE ASP SEQRES 21 A 297 TYR GLY PRO GLY VAL ARG PHE VAL ARG PHE GLU HIS GLY SEQRES 22 A 297 GLY GLN ASP SER VAL TYR TRP LYS GLY TRP PHE GLY ALA SEQRES 23 A 297 ARG VAL THR ASN SER SER VAL TRP VAL GLU PRO SEQRES 1 B 166 GLY PRO HIS MET PRO SER ILE LYS LEU GLN SER SER ASP SEQRES 2 B 166 GLY GLU ILE PHE GLU VAL ASP VAL GLU ILE ALA LYS GLN SEQRES 3 B 166 SER VAL THR ILE LYS THR MET LEU GLU ASP LEU GLY MET SEQRES 4 B 166 ASP ASP GLU GLY ASP ASP ASP PRO VAL PRO LEU PRO ASN SEQRES 5 B 166 VAL ASN ALA ALA ILE LEU LYS LYS VAL ILE GLN TRP CYS SEQRES 6 B 166 THR HIS HIS LYS ASP ASP PRO PRO PRO PRO GLU ASP ASP SEQRES 7 B 166 GLU ASN LYS GLU LYS ARG THR ASP ASP ILE PRO VAL TRP SEQRES 8 B 166 ASP GLN GLU PHE LEU LYS VAL ASP GLN GLY THR LEU PHE SEQRES 9 B 166 GLU LEU ILE LEU ALA ALA ASN TYR LEU ASP ILE LYS GLY SEQRES 10 B 166 LEU LEU ASP VAL THR CYS LYS THR VAL ALA ASN MET ILE SEQRES 11 B 166 LYS GLY LYS THR PRO GLU GLU ILE ARG LYS THR PHE ASN SEQRES 12 B 166 ILE LYS ASN ASP PHE THR GLU GLU GLU GLU ALA GLN VAL SEQRES 13 B 166 ARG LYS GLU ASN GLN TRP CYS GLU GLU LYS FORMUL 3 HOH *22(H2 O) HELIX 1 1 PRO A 55 GLU A 65 1 11 HELIX 2 2 PRO A 67 ALA A 74 1 8 HELIX 3 3 CYS A 75 VAL A 78 5 4 HELIX 4 4 CYS A 79 ASP A 87 1 9 HELIX 5 5 GLY A 88 GLU A 99 1 12 HELIX 6 6 HIS A 113 ARG A 124 1 12 HELIX 7 7 TRP A 194 THR A 201 1 8 HELIX 8 8 SER B 24 THR B 29 1 6 HELIX 9 9 ASN B 51 THR B 63 1 13 HELIX 10 10 PRO B 86 LEU B 93 1 8 HELIX 11 11 ASP B 96 ASP B 111 1 16 HELIX 12 12 ILE B 112 LYS B 128 1 17 HELIX 13 13 THR B 131 ASN B 140 1 10 SHEET 1 A 5 SER A 141 GLU A 144 0 SHEET 2 A 5 CYS A 180 ASP A 187 -1 O ALA A 183 N SER A 141 SHEET 3 A 5 PHE A 267 ASP A 276 -1 O VAL A 268 N ILE A 186 SHEET 4 A 5 SER A 219 LEU A 228 -1 N LEU A 220 O GLN A 275 SHEET 5 A 5 VAL A 234 ALA A 239 -1 O PHE A 238 N VAL A 225 SHEET 1 B 5 SER A 141 GLU A 144 0 SHEET 2 B 5 CYS A 180 ASP A 187 -1 O ALA A 183 N SER A 141 SHEET 3 B 5 PHE A 267 ASP A 276 -1 O VAL A 268 N ILE A 186 SHEET 4 B 5 SER A 219 LEU A 228 -1 N LEU A 220 O GLN A 275 SHEET 5 B 5 VAL A 243 ALA A 244 -1 O VAL A 243 N TYR A 221 SHEET 1 C 5 LYS A 151 GLU A 154 0 SHEET 2 C 5 LYS A 171 ALA A 174 -1 O ALA A 174 N LYS A 151 SHEET 3 C 5 ARG A 287 VAL A 295 -1 O VAL A 288 N PHE A 173 SHEET 4 C 5 ILE A 205 SER A 212 -1 N SER A 212 O ARG A 287 SHEET 5 C 5 MET A 252 PHE A 258 -1 O MET A 252 N TYR A 211 SHEET 1 D 3 ILE B 13 VAL B 16 0 SHEET 2 D 3 ILE B 4 GLN B 7 -1 N LEU B 6 O PHE B 14 SHEET 3 D 3 VAL B 45 PRO B 46 1 O VAL B 45 N GLN B 7 CISPEP 1 LEU A 155 PRO A 156 0 -8.13 CRYST1 106.408 106.408 109.854 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009398 0.005426 0.000000 0.00000 SCALE2 0.000000 0.010852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009103 0.00000