data_2E3S # _entry.id 2E3S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2E3S RCSB RCSB026188 WWPDB D_1000026188 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2E3M . unspecified PDB 2E3N . unspecified PDB 2E3O . unspecified PDB 2E3P . unspecified PDB 2E3Q . unspecified PDB 2E3R . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2E3S _pdbx_database_status.recvd_initial_deposition_date 2006-11-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kudo, N.' 1 'Kumagai, K.' 2 'Wakatsuki, S.' 3 'Nishijima, M.' 4 'Hanada, K.' 5 'Kato, R.' 6 # _citation.id primary _citation.title 'Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 105 _citation.page_first 488 _citation.page_last 493 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18184806 _citation.pdbx_database_id_DOI 10.1073/pnas.0709191105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kudo, N.' 1 primary 'Kumagai, K.' 2 primary 'Tomishige, N.' 3 primary 'Yamaji, T.' 4 primary 'Wakatsuki, S.' 5 primary 'Nishijima, M.' 6 primary 'Hanada, K.' 7 primary 'Kato, R.' 8 # _cell.entry_id 2E3S _cell.length_a 41.243 _cell.length_b 75.646 _cell.length_c 42.327 _cell.angle_alpha 90.00 _cell.angle_beta 108.44 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2E3S _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lipid-transfer protein CERT' 28931.764 1 ? ? 'CERT START DOMAIN (RESIDUES 347-598)' ? 2 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Goodpasture-antigen binding protein, GPBP, CDNA FLJ34532 fis, clone HLUNG2008235, highly similar to Homo sapiens goodpasture antigen-binding protein (COL4A3BP)mRNA ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNSLHWPTSLPSGDAFSSVGTHRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHA VKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVC NFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRF TSYVQEKTAGKPILF ; _entity_poly.pdbx_seq_one_letter_code_can ;SNSLHWPTSLPSGDAFSSVGTHRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHA VKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVC NFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRF TSYVQEKTAGKPILF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 SER n 1 4 LEU n 1 5 HIS n 1 6 TRP n 1 7 PRO n 1 8 THR n 1 9 SER n 1 10 LEU n 1 11 PRO n 1 12 SER n 1 13 GLY n 1 14 ASP n 1 15 ALA n 1 16 PHE n 1 17 SER n 1 18 SER n 1 19 VAL n 1 20 GLY n 1 21 THR n 1 22 HIS n 1 23 ARG n 1 24 PHE n 1 25 VAL n 1 26 GLN n 1 27 LYS n 1 28 VAL n 1 29 GLU n 1 30 GLU n 1 31 MET n 1 32 VAL n 1 33 GLN n 1 34 ASN n 1 35 HIS n 1 36 MET n 1 37 THR n 1 38 TYR n 1 39 SER n 1 40 LEU n 1 41 GLN n 1 42 ASP n 1 43 VAL n 1 44 GLY n 1 45 GLY n 1 46 ASP n 1 47 ALA n 1 48 ASN n 1 49 TRP n 1 50 GLN n 1 51 LEU n 1 52 VAL n 1 53 VAL n 1 54 GLU n 1 55 GLU n 1 56 GLY n 1 57 GLU n 1 58 MET n 1 59 LYS n 1 60 VAL n 1 61 TYR n 1 62 ARG n 1 63 ARG n 1 64 GLU n 1 65 VAL n 1 66 GLU n 1 67 GLU n 1 68 ASN n 1 69 GLY n 1 70 ILE n 1 71 VAL n 1 72 LEU n 1 73 ASP n 1 74 PRO n 1 75 LEU n 1 76 LYS n 1 77 ALA n 1 78 THR n 1 79 HIS n 1 80 ALA n 1 81 VAL n 1 82 LYS n 1 83 GLY n 1 84 VAL n 1 85 THR n 1 86 GLY n 1 87 HIS n 1 88 GLU n 1 89 VAL n 1 90 CYS n 1 91 ASN n 1 92 TYR n 1 93 PHE n 1 94 TRP n 1 95 ASN n 1 96 VAL n 1 97 ASP n 1 98 VAL n 1 99 ARG n 1 100 ASN n 1 101 ASP n 1 102 TRP n 1 103 GLU n 1 104 THR n 1 105 THR n 1 106 ILE n 1 107 GLU n 1 108 ASN n 1 109 PHE n 1 110 HIS n 1 111 VAL n 1 112 VAL n 1 113 GLU n 1 114 THR n 1 115 LEU n 1 116 ALA n 1 117 ASP n 1 118 ASN n 1 119 ALA n 1 120 ILE n 1 121 ILE n 1 122 ILE n 1 123 TYR n 1 124 GLN n 1 125 THR n 1 126 HIS n 1 127 LYS n 1 128 ARG n 1 129 VAL n 1 130 TRP n 1 131 PRO n 1 132 ALA n 1 133 SER n 1 134 GLN n 1 135 ARG n 1 136 ASP n 1 137 VAL n 1 138 LEU n 1 139 TYR n 1 140 LEU n 1 141 SER n 1 142 VAL n 1 143 ILE n 1 144 ARG n 1 145 LYS n 1 146 ILE n 1 147 PRO n 1 148 ALA n 1 149 LEU n 1 150 THR n 1 151 GLU n 1 152 ASN n 1 153 ASP n 1 154 PRO n 1 155 GLU n 1 156 THR n 1 157 TRP n 1 158 ILE n 1 159 VAL n 1 160 CYS n 1 161 ASN n 1 162 PHE n 1 163 SER n 1 164 VAL n 1 165 ASP n 1 166 HIS n 1 167 ASP n 1 168 SER n 1 169 ALA n 1 170 PRO n 1 171 LEU n 1 172 ASN n 1 173 ASN n 1 174 ARG n 1 175 CYS n 1 176 VAL n 1 177 ARG n 1 178 ALA n 1 179 LYS n 1 180 ILE n 1 181 ASN n 1 182 VAL n 1 183 ALA n 1 184 MET n 1 185 ILE n 1 186 CYS n 1 187 GLN n 1 188 THR n 1 189 LEU n 1 190 VAL n 1 191 SER n 1 192 PRO n 1 193 PRO n 1 194 GLU n 1 195 GLY n 1 196 ASN n 1 197 GLN n 1 198 GLU n 1 199 ILE n 1 200 SER n 1 201 ARG n 1 202 ASP n 1 203 ASN n 1 204 ILE n 1 205 LEU n 1 206 CYS n 1 207 LYS n 1 208 ILE n 1 209 THR n 1 210 TYR n 1 211 VAL n 1 212 ALA n 1 213 ASN n 1 214 VAL n 1 215 ASN n 1 216 PRO n 1 217 GLY n 1 218 GLY n 1 219 TRP n 1 220 ALA n 1 221 PRO n 1 222 ALA n 1 223 SER n 1 224 VAL n 1 225 LEU n 1 226 ARG n 1 227 ALA n 1 228 VAL n 1 229 ALA n 1 230 LYS n 1 231 ARG n 1 232 GLU n 1 233 TYR n 1 234 PRO n 1 235 LYS n 1 236 PHE n 1 237 LEU n 1 238 LYS n 1 239 ARG n 1 240 PHE n 1 241 THR n 1 242 SER n 1 243 TYR n 1 244 VAL n 1 245 GLN n 1 246 GLU n 1 247 LYS n 1 248 THR n 1 249 ALA n 1 250 GLY n 1 251 LYS n 1 252 PRO n 1 253 ILE n 1 254 LEU n 1 255 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene CERT _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5alpha _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pGEX-5X1 (MODIFIED)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q53YV2_HUMAN _struct_ref.pdbx_db_accession Q53YV2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LHWPTSLPSGDAFSSVGTHRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKG VTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFS VDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSY VQEKTAGKPILF ; _struct_ref.pdbx_align_begin 347 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2E3S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 255 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q53YV2 _struct_ref_seq.db_align_beg 347 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 598 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 347 _struct_ref_seq.pdbx_auth_seq_align_end 598 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2E3S SER A 1 ? UNP Q53YV2 ? ? 'EXPRESSION TAG' 344 1 1 2E3S ASN A 2 ? UNP Q53YV2 ? ? 'EXPRESSION TAG' 345 2 1 2E3S SER A 3 ? UNP Q53YV2 ? ? 'EXPRESSION TAG' 346 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2E3S _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_percent_sol 43.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-03-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9796 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength 0.9796 _diffrn_source.pdbx_wavelength_list 0.9796 # _reflns.entry_id 2E3S _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.940 _reflns.number_obs 17894 _reflns.number_all ? _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 83.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2E3S _refine.ls_number_reflns_obs 16960 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.16 _refine.ls_d_res_high 1.94 _refine.ls_percent_reflns_obs 97.4 _refine.ls_R_factor_obs 0.234 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.233 _refine.ls_R_factor_R_free 0.259 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 916 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.B_iso_mean 30.67 _refine.aniso_B[1][1] 0.84000 _refine.aniso_B[2][2] -0.62000 _refine.aniso_B[3][3] -0.51000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] -0.46000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.205 _refine.pdbx_overall_ESU_R_Free 0.171 _refine.overall_SU_ML 0.120 _refine.overall_SU_B 4.150 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1806 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 1860 _refine_hist.d_res_high 1.94 _refine_hist.d_res_low 40.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 1843 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.115 1.929 ? 2503 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.936 5.000 ? 221 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.376 24.176 ? 91 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.629 15.000 ? 317 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.835 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 285 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1390 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.182 0.200 ? 716 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.296 0.200 ? 1236 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.106 0.200 ? 76 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.171 0.200 ? 34 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.073 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.700 1.500 ? 1157 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.135 2.000 ? 1821 'X-RAY DIFFRACTION' ? r_scbond_it 1.363 3.000 ? 794 'X-RAY DIFFRACTION' ? r_scangle_it 2.150 4.500 ? 682 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.94 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work 928 _refine_ls_shell.R_factor_R_work 0.288 _refine_ls_shell.percent_reflns_obs 71.85 _refine_ls_shell.R_factor_R_free 0.299 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2E3S _struct.title 'Crystal structure of CERT START domain co-crystallized with C24-ceramide (P21)' _struct.pdbx_descriptor 'Lipid-transfer protein CERT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2E3S _struct_keywords.pdbx_keywords 'LIPID TRANSPORT' _struct_keywords.text 'LIPID TRANSFER PROTEIN, CERT, CERAMIDE TRANSFER, LIPID TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 24 ? SER A 39 ? PHE A 367 SER A 382 1 ? 16 HELX_P HELX_P2 2 THR A 85 ? ASN A 95 ? THR A 428 ASN A 438 1 ? 11 HELX_P HELX_P3 3 VAL A 98 ? GLU A 103 ? VAL A 441 GLU A 446 1 ? 6 HELX_P HELX_P4 4 SER A 200 ? ASP A 202 ? SER A 543 ASP A 545 5 ? 3 HELX_P HELX_P5 5 PRO A 221 ? ALA A 249 ? PRO A 564 ALA A 592 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 8 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 50 ? GLU A 55 ? GLN A 393 GLU A 398 A 2 MET A 58 ? ARG A 62 ? MET A 401 ARG A 405 A 3 LEU A 75 ? LYS A 82 ? LEU A 418 LYS A 425 A 4 ILE A 204 ? ASN A 215 ? ILE A 547 ASN A 558 A 5 LYS A 179 ? VAL A 190 ? LYS A 522 VAL A 533 A 6 THR A 156 ? SER A 163 ? THR A 499 SER A 506 A 7 ARG A 135 ? ILE A 146 ? ARG A 478 ILE A 489 A 8 ALA A 119 ? HIS A 126 ? ALA A 462 HIS A 469 A 9 ILE A 106 ? ALA A 116 ? ILE A 449 ALA A 459 B 1 GLN A 50 ? GLU A 55 ? GLN A 393 GLU A 398 B 2 MET A 58 ? ARG A 62 ? MET A 401 ARG A 405 B 3 LEU A 75 ? LYS A 82 ? LEU A 418 LYS A 425 B 4 ILE A 204 ? ASN A 215 ? ILE A 547 ASN A 558 B 5 LYS A 179 ? VAL A 190 ? LYS A 522 VAL A 533 B 6 THR A 156 ? SER A 163 ? THR A 499 SER A 506 B 7 ARG A 135 ? ILE A 146 ? ARG A 478 ILE A 489 B 8 VAL A 176 ? ARG A 177 ? VAL A 519 ARG A 520 C 1 GLU A 66 ? GLU A 67 ? GLU A 409 GLU A 410 C 2 ILE A 70 ? VAL A 71 ? ILE A 413 VAL A 414 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 53 ? N VAL A 396 O VAL A 60 ? O VAL A 403 A 2 3 N TYR A 61 ? N TYR A 404 O LYS A 76 ? O LYS A 419 A 3 4 N HIS A 79 ? N HIS A 422 O ILE A 208 ? O ILE A 551 A 4 5 O ASN A 215 ? O ASN A 558 N LYS A 179 ? N LYS A 522 A 5 6 O CYS A 186 ? O CYS A 529 N TRP A 157 ? N TRP A 500 A 6 7 O THR A 156 ? O THR A 499 N ILE A 146 ? N ILE A 489 A 7 8 O SER A 141 ? O SER A 484 N ILE A 120 ? N ILE A 463 A 8 9 O THR A 125 ? O THR A 468 N ASN A 108 ? N ASN A 451 B 1 2 N VAL A 53 ? N VAL A 396 O VAL A 60 ? O VAL A 403 B 2 3 N TYR A 61 ? N TYR A 404 O LYS A 76 ? O LYS A 419 B 3 4 N HIS A 79 ? N HIS A 422 O ILE A 208 ? O ILE A 551 B 4 5 O ASN A 215 ? O ASN A 558 N LYS A 179 ? N LYS A 522 B 5 6 O CYS A 186 ? O CYS A 529 N TRP A 157 ? N TRP A 500 B 6 7 O THR A 156 ? O THR A 499 N ILE A 146 ? N ILE A 489 B 7 8 N ASP A 136 ? N ASP A 479 O VAL A 176 ? O VAL A 519 C 1 2 N GLU A 67 ? N GLU A 410 O ILE A 70 ? O ILE A 413 # _database_PDB_matrix.entry_id 2E3S _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2E3S _atom_sites.fract_transf_matrix[1][1] 0.024247 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008084 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013219 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024904 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 344 ? ? ? A . n A 1 2 ASN 2 345 ? ? ? A . n A 1 3 SER 3 346 ? ? ? A . n A 1 4 LEU 4 347 ? ? ? A . n A 1 5 HIS 5 348 ? ? ? A . n A 1 6 TRP 6 349 ? ? ? A . n A 1 7 PRO 7 350 ? ? ? A . n A 1 8 THR 8 351 ? ? ? A . n A 1 9 SER 9 352 ? ? ? A . n A 1 10 LEU 10 353 ? ? ? A . n A 1 11 PRO 11 354 ? ? ? A . n A 1 12 SER 12 355 ? ? ? A . n A 1 13 GLY 13 356 ? ? ? A . n A 1 14 ASP 14 357 ? ? ? A . n A 1 15 ALA 15 358 ? ? ? A . n A 1 16 PHE 16 359 ? ? ? A . n A 1 17 SER 17 360 ? ? ? A . n A 1 18 SER 18 361 ? ? ? A . n A 1 19 VAL 19 362 ? ? ? A . n A 1 20 GLY 20 363 ? ? ? A . n A 1 21 THR 21 364 ? ? ? A . n A 1 22 HIS 22 365 365 HIS HIS A . n A 1 23 ARG 23 366 366 ARG ARG A . n A 1 24 PHE 24 367 367 PHE PHE A . n A 1 25 VAL 25 368 368 VAL VAL A . n A 1 26 GLN 26 369 369 GLN GLN A . n A 1 27 LYS 27 370 370 LYS LYS A . n A 1 28 VAL 28 371 371 VAL VAL A . n A 1 29 GLU 29 372 372 GLU GLU A . n A 1 30 GLU 30 373 373 GLU GLU A . n A 1 31 MET 31 374 374 MET MET A . n A 1 32 VAL 32 375 375 VAL VAL A . n A 1 33 GLN 33 376 376 GLN GLN A . n A 1 34 ASN 34 377 377 ASN ASN A . n A 1 35 HIS 35 378 378 HIS HIS A . n A 1 36 MET 36 379 379 MET MET A . n A 1 37 THR 37 380 380 THR THR A . n A 1 38 TYR 38 381 381 TYR TYR A . n A 1 39 SER 39 382 382 SER SER A . n A 1 40 LEU 40 383 383 LEU LEU A . n A 1 41 GLN 41 384 384 GLN GLN A . n A 1 42 ASP 42 385 385 ASP ASP A . n A 1 43 VAL 43 386 386 VAL VAL A . n A 1 44 GLY 44 387 387 GLY GLY A . n A 1 45 GLY 45 388 388 GLY GLY A . n A 1 46 ASP 46 389 389 ASP ASP A . n A 1 47 ALA 47 390 390 ALA ALA A . n A 1 48 ASN 48 391 391 ASN ASN A . n A 1 49 TRP 49 392 392 TRP TRP A . n A 1 50 GLN 50 393 393 GLN GLN A . n A 1 51 LEU 51 394 394 LEU LEU A . n A 1 52 VAL 52 395 395 VAL VAL A . n A 1 53 VAL 53 396 396 VAL VAL A . n A 1 54 GLU 54 397 397 GLU GLU A . n A 1 55 GLU 55 398 398 GLU GLU A . n A 1 56 GLY 56 399 399 GLY GLY A . n A 1 57 GLU 57 400 400 GLU GLU A . n A 1 58 MET 58 401 401 MET MET A . n A 1 59 LYS 59 402 402 LYS LYS A . n A 1 60 VAL 60 403 403 VAL VAL A . n A 1 61 TYR 61 404 404 TYR TYR A . n A 1 62 ARG 62 405 405 ARG ARG A . n A 1 63 ARG 63 406 406 ARG ARG A . n A 1 64 GLU 64 407 407 GLU GLU A . n A 1 65 VAL 65 408 408 VAL VAL A . n A 1 66 GLU 66 409 409 GLU GLU A . n A 1 67 GLU 67 410 410 GLU GLU A . n A 1 68 ASN 68 411 411 ASN ASN A . n A 1 69 GLY 69 412 412 GLY GLY A . n A 1 70 ILE 70 413 413 ILE ILE A . n A 1 71 VAL 71 414 414 VAL VAL A . n A 1 72 LEU 72 415 415 LEU LEU A . n A 1 73 ASP 73 416 416 ASP ASP A . n A 1 74 PRO 74 417 417 PRO PRO A . n A 1 75 LEU 75 418 418 LEU LEU A . n A 1 76 LYS 76 419 419 LYS LYS A . n A 1 77 ALA 77 420 420 ALA ALA A . n A 1 78 THR 78 421 421 THR THR A . n A 1 79 HIS 79 422 422 HIS HIS A . n A 1 80 ALA 80 423 423 ALA ALA A . n A 1 81 VAL 81 424 424 VAL VAL A . n A 1 82 LYS 82 425 425 LYS LYS A . n A 1 83 GLY 83 426 426 GLY GLY A . n A 1 84 VAL 84 427 427 VAL VAL A . n A 1 85 THR 85 428 428 THR THR A . n A 1 86 GLY 86 429 429 GLY GLY A . n A 1 87 HIS 87 430 430 HIS HIS A . n A 1 88 GLU 88 431 431 GLU GLU A . n A 1 89 VAL 89 432 432 VAL VAL A . n A 1 90 CYS 90 433 433 CYS CYS A . n A 1 91 ASN 91 434 434 ASN ASN A . n A 1 92 TYR 92 435 435 TYR TYR A . n A 1 93 PHE 93 436 436 PHE PHE A . n A 1 94 TRP 94 437 437 TRP TRP A . n A 1 95 ASN 95 438 438 ASN ASN A . n A 1 96 VAL 96 439 439 VAL VAL A . n A 1 97 ASP 97 440 440 ASP ASP A . n A 1 98 VAL 98 441 441 VAL VAL A . n A 1 99 ARG 99 442 442 ARG ARG A . n A 1 100 ASN 100 443 443 ASN ASN A . n A 1 101 ASP 101 444 444 ASP ASP A . n A 1 102 TRP 102 445 445 TRP TRP A . n A 1 103 GLU 103 446 446 GLU GLU A . n A 1 104 THR 104 447 447 THR THR A . n A 1 105 THR 105 448 448 THR THR A . n A 1 106 ILE 106 449 449 ILE ILE A . n A 1 107 GLU 107 450 450 GLU GLU A . n A 1 108 ASN 108 451 451 ASN ASN A . n A 1 109 PHE 109 452 452 PHE PHE A . n A 1 110 HIS 110 453 453 HIS HIS A . n A 1 111 VAL 111 454 454 VAL VAL A . n A 1 112 VAL 112 455 455 VAL VAL A . n A 1 113 GLU 113 456 456 GLU GLU A . n A 1 114 THR 114 457 457 THR THR A . n A 1 115 LEU 115 458 458 LEU LEU A . n A 1 116 ALA 116 459 459 ALA ALA A . n A 1 117 ASP 117 460 460 ASP ASP A . n A 1 118 ASN 118 461 461 ASN ASN A . n A 1 119 ALA 119 462 462 ALA ALA A . n A 1 120 ILE 120 463 463 ILE ILE A . n A 1 121 ILE 121 464 464 ILE ILE A . n A 1 122 ILE 122 465 465 ILE ILE A . n A 1 123 TYR 123 466 466 TYR TYR A . n A 1 124 GLN 124 467 467 GLN GLN A . n A 1 125 THR 125 468 468 THR THR A . n A 1 126 HIS 126 469 469 HIS HIS A . n A 1 127 LYS 127 470 470 LYS LYS A . n A 1 128 ARG 128 471 471 ARG ARG A . n A 1 129 VAL 129 472 472 VAL VAL A . n A 1 130 TRP 130 473 ? ? ? A . n A 1 131 PRO 131 474 ? ? ? A . n A 1 132 ALA 132 475 ? ? ? A . n A 1 133 SER 133 476 476 SER SER A . n A 1 134 GLN 134 477 477 GLN GLN A . n A 1 135 ARG 135 478 478 ARG ARG A . n A 1 136 ASP 136 479 479 ASP ASP A . n A 1 137 VAL 137 480 480 VAL VAL A . n A 1 138 LEU 138 481 481 LEU LEU A . n A 1 139 TYR 139 482 482 TYR TYR A . n A 1 140 LEU 140 483 483 LEU LEU A . n A 1 141 SER 141 484 484 SER SER A . n A 1 142 VAL 142 485 485 VAL VAL A . n A 1 143 ILE 143 486 486 ILE ILE A . n A 1 144 ARG 144 487 487 ARG ARG A . n A 1 145 LYS 145 488 488 LYS LYS A . n A 1 146 ILE 146 489 489 ILE ILE A . n A 1 147 PRO 147 490 490 PRO PRO A . n A 1 148 ALA 148 491 491 ALA ALA A . n A 1 149 LEU 149 492 492 LEU LEU A . n A 1 150 THR 150 493 493 THR THR A . n A 1 151 GLU 151 494 494 GLU GLU A . n A 1 152 ASN 152 495 495 ASN ASN A . n A 1 153 ASP 153 496 496 ASP ASP A . n A 1 154 PRO 154 497 497 PRO PRO A . n A 1 155 GLU 155 498 498 GLU GLU A . n A 1 156 THR 156 499 499 THR THR A . n A 1 157 TRP 157 500 500 TRP TRP A . n A 1 158 ILE 158 501 501 ILE ILE A . n A 1 159 VAL 159 502 502 VAL VAL A . n A 1 160 CYS 160 503 503 CYS CYS A . n A 1 161 ASN 161 504 504 ASN ASN A . n A 1 162 PHE 162 505 505 PHE PHE A . n A 1 163 SER 163 506 506 SER SER A . n A 1 164 VAL 164 507 507 VAL VAL A . n A 1 165 ASP 165 508 508 ASP ASP A . n A 1 166 HIS 166 509 509 HIS HIS A . n A 1 167 ASP 167 510 510 ASP ASP A . n A 1 168 SER 168 511 511 SER SER A . n A 1 169 ALA 169 512 512 ALA ALA A . n A 1 170 PRO 170 513 513 PRO PRO A . n A 1 171 LEU 171 514 514 LEU LEU A . n A 1 172 ASN 172 515 515 ASN ASN A . n A 1 173 ASN 173 516 516 ASN ASN A . n A 1 174 ARG 174 517 517 ARG ARG A . n A 1 175 CYS 175 518 518 CYS CYS A . n A 1 176 VAL 176 519 519 VAL VAL A . n A 1 177 ARG 177 520 520 ARG ARG A . n A 1 178 ALA 178 521 521 ALA ALA A . n A 1 179 LYS 179 522 522 LYS LYS A . n A 1 180 ILE 180 523 523 ILE ILE A . n A 1 181 ASN 181 524 524 ASN ASN A . n A 1 182 VAL 182 525 525 VAL VAL A . n A 1 183 ALA 183 526 526 ALA ALA A . n A 1 184 MET 184 527 527 MET MET A . n A 1 185 ILE 185 528 528 ILE ILE A . n A 1 186 CYS 186 529 529 CYS CYS A . n A 1 187 GLN 187 530 530 GLN GLN A . n A 1 188 THR 188 531 531 THR THR A . n A 1 189 LEU 189 532 532 LEU LEU A . n A 1 190 VAL 190 533 533 VAL VAL A . n A 1 191 SER 191 534 534 SER SER A . n A 1 192 PRO 192 535 ? ? ? A . n A 1 193 PRO 193 536 ? ? ? A . n A 1 194 GLU 194 537 ? ? ? A . n A 1 195 GLY 195 538 ? ? ? A . n A 1 196 ASN 196 539 ? ? ? A . n A 1 197 GLN 197 540 ? ? ? A . n A 1 198 GLU 198 541 ? ? ? A . n A 1 199 ILE 199 542 542 ILE ILE A . n A 1 200 SER 200 543 543 SER SER A . n A 1 201 ARG 201 544 544 ARG ARG A . n A 1 202 ASP 202 545 545 ASP ASP A . n A 1 203 ASN 203 546 546 ASN ASN A . n A 1 204 ILE 204 547 547 ILE ILE A . n A 1 205 LEU 205 548 548 LEU LEU A . n A 1 206 CYS 206 549 549 CYS CYS A . n A 1 207 LYS 207 550 550 LYS LYS A . n A 1 208 ILE 208 551 551 ILE ILE A . n A 1 209 THR 209 552 552 THR THR A . n A 1 210 TYR 210 553 553 TYR TYR A . n A 1 211 VAL 211 554 554 VAL VAL A . n A 1 212 ALA 212 555 555 ALA ALA A . n A 1 213 ASN 213 556 556 ASN ASN A . n A 1 214 VAL 214 557 557 VAL VAL A . n A 1 215 ASN 215 558 558 ASN ASN A . n A 1 216 PRO 216 559 559 PRO PRO A . n A 1 217 GLY 217 560 560 GLY GLY A . n A 1 218 GLY 218 561 561 GLY GLY A . n A 1 219 TRP 219 562 562 TRP TRP A . n A 1 220 ALA 220 563 563 ALA ALA A . n A 1 221 PRO 221 564 564 PRO PRO A . n A 1 222 ALA 222 565 565 ALA ALA A . n A 1 223 SER 223 566 566 SER SER A . n A 1 224 VAL 224 567 567 VAL VAL A . n A 1 225 LEU 225 568 568 LEU LEU A . n A 1 226 ARG 226 569 569 ARG ARG A . n A 1 227 ALA 227 570 570 ALA ALA A . n A 1 228 VAL 228 571 571 VAL VAL A . n A 1 229 ALA 229 572 572 ALA ALA A . n A 1 230 LYS 230 573 573 LYS LYS A . n A 1 231 ARG 231 574 574 ARG ARG A . n A 1 232 GLU 232 575 575 GLU GLU A . n A 1 233 TYR 233 576 576 TYR TYR A . n A 1 234 PRO 234 577 577 PRO PRO A . n A 1 235 LYS 235 578 578 LYS LYS A . n A 1 236 PHE 236 579 579 PHE PHE A . n A 1 237 LEU 237 580 580 LEU LEU A . n A 1 238 LYS 238 581 581 LYS LYS A . n A 1 239 ARG 239 582 582 ARG ARG A . n A 1 240 PHE 240 583 583 PHE PHE A . n A 1 241 THR 241 584 584 THR THR A . n A 1 242 SER 242 585 585 SER SER A . n A 1 243 TYR 243 586 586 TYR TYR A . n A 1 244 VAL 244 587 587 VAL VAL A . n A 1 245 GLN 245 588 588 GLN GLN A . n A 1 246 GLU 246 589 589 GLU GLU A . n A 1 247 LYS 247 590 590 LYS LYS A . n A 1 248 THR 248 591 591 THR THR A . n A 1 249 ALA 249 592 592 ALA ALA A . n A 1 250 GLY 250 593 593 GLY GLY A . n A 1 251 LYS 251 594 594 LYS LYS A . n A 1 252 PRO 252 595 595 PRO PRO A . n A 1 253 ILE 253 596 596 ILE ILE A . n A 1 254 LEU 254 597 597 LEU LEU A . n A 1 255 PHE 255 598 598 PHE PHE A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-18 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOLREP phasing . ? 1 REFMAC refinement 5.2.0005 ? 2 HKL-2000 'data collection' . ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 416 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -10.93 _pdbx_validate_torsion.psi 94.11 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 344 ? A SER 1 2 1 Y 1 A ASN 345 ? A ASN 2 3 1 Y 1 A SER 346 ? A SER 3 4 1 Y 1 A LEU 347 ? A LEU 4 5 1 Y 1 A HIS 348 ? A HIS 5 6 1 Y 1 A TRP 349 ? A TRP 6 7 1 Y 1 A PRO 350 ? A PRO 7 8 1 Y 1 A THR 351 ? A THR 8 9 1 Y 1 A SER 352 ? A SER 9 10 1 Y 1 A LEU 353 ? A LEU 10 11 1 Y 1 A PRO 354 ? A PRO 11 12 1 Y 1 A SER 355 ? A SER 12 13 1 Y 1 A GLY 356 ? A GLY 13 14 1 Y 1 A ASP 357 ? A ASP 14 15 1 Y 1 A ALA 358 ? A ALA 15 16 1 Y 1 A PHE 359 ? A PHE 16 17 1 Y 1 A SER 360 ? A SER 17 18 1 Y 1 A SER 361 ? A SER 18 19 1 Y 1 A VAL 362 ? A VAL 19 20 1 Y 1 A GLY 363 ? A GLY 20 21 1 Y 1 A THR 364 ? A THR 21 22 1 Y 1 A TRP 473 ? A TRP 130 23 1 Y 1 A PRO 474 ? A PRO 131 24 1 Y 1 A ALA 475 ? A ALA 132 25 1 Y 1 A PRO 535 ? A PRO 192 26 1 Y 1 A PRO 536 ? A PRO 193 27 1 Y 1 A GLU 537 ? A GLU 194 28 1 Y 1 A GLY 538 ? A GLY 195 29 1 Y 1 A ASN 539 ? A ASN 196 30 1 Y 1 A GLN 540 ? A GLN 197 31 1 Y 1 A GLU 541 ? A GLU 198 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 599 589 HOH HOH A . B 2 HOH 2 600 590 HOH HOH A . B 2 HOH 3 601 591 HOH HOH A . B 2 HOH 4 602 592 HOH HOH A . B 2 HOH 5 603 593 HOH HOH A . B 2 HOH 6 604 594 HOH HOH A . B 2 HOH 7 605 595 HOH HOH A . B 2 HOH 8 606 596 HOH HOH A . B 2 HOH 9 607 597 HOH HOH A . B 2 HOH 10 608 598 HOH HOH A . B 2 HOH 11 609 599 HOH HOH A . B 2 HOH 12 610 600 HOH HOH A . B 2 HOH 13 611 601 HOH HOH A . B 2 HOH 14 612 602 HOH HOH A . B 2 HOH 15 613 603 HOH HOH A . B 2 HOH 16 614 604 HOH HOH A . B 2 HOH 17 615 605 HOH HOH A . B 2 HOH 18 616 606 HOH HOH A . B 2 HOH 19 617 607 HOH HOH A . B 2 HOH 20 618 608 HOH HOH A . B 2 HOH 21 619 609 HOH HOH A . B 2 HOH 22 620 610 HOH HOH A . B 2 HOH 23 621 611 HOH HOH A . B 2 HOH 24 622 612 HOH HOH A . B 2 HOH 25 623 613 HOH HOH A . B 2 HOH 26 624 614 HOH HOH A . B 2 HOH 27 625 615 HOH HOH A . B 2 HOH 28 626 616 HOH HOH A . B 2 HOH 29 627 617 HOH HOH A . B 2 HOH 30 628 618 HOH HOH A . B 2 HOH 31 629 619 HOH HOH A . B 2 HOH 32 630 620 HOH HOH A . B 2 HOH 33 631 621 HOH HOH A . B 2 HOH 34 632 622 HOH HOH A . B 2 HOH 35 633 623 HOH HOH A . B 2 HOH 36 634 624 HOH HOH A . B 2 HOH 37 635 625 HOH HOH A . B 2 HOH 38 636 626 HOH HOH A . B 2 HOH 39 637 627 HOH HOH A . B 2 HOH 40 638 628 HOH HOH A . B 2 HOH 41 639 629 HOH HOH A . B 2 HOH 42 640 630 HOH HOH A . B 2 HOH 43 641 631 HOH HOH A . B 2 HOH 44 642 632 HOH HOH A . B 2 HOH 45 643 633 HOH HOH A . B 2 HOH 46 644 634 HOH HOH A . B 2 HOH 47 645 635 HOH HOH A . B 2 HOH 48 646 636 HOH HOH A . B 2 HOH 49 647 637 HOH HOH A . B 2 HOH 50 648 638 HOH HOH A . B 2 HOH 51 649 639 HOH HOH A . B 2 HOH 52 650 640 HOH HOH A . B 2 HOH 53 651 641 HOH HOH A . B 2 HOH 54 652 642 HOH HOH A . #