HEADER HYDROLASE, BLOOD CLOTTING, TOXIN 30-NOV-06 2E3X TITLE CRYSTAL STRUCTURE OF RUSSELL'S VIPER VENOM METALLOPROTEINASE CAVEAT 2E3X MAN E 3 HAS WRONG CHIRALITY AT ATOM C1 MAN E 4 HAS WRONG CAVEAT 2 2E3X CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR X-ACTIVATING ENZYME HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RVV-X HEAVY CHAIN, COAGULATION FACTOR X-ACTIVATING ENZYME COMPND 5 ALPHA-CHAIN, RUSSELLYSIN; COMPND 6 EC: 3.4.24.58; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR X-ACTIVATING ENZYME LIGHT CHAIN 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: RVV-X LIGHT CHAIN 1, COAGULATION FACTOR X-ACTIVATING ENZYME COMPND 11 BETA-CHAIN, C-TYPE LECTIN-LIKE PROTEIN SUBUNIT 1, RVV-X LIGHT CHAIN- COMPND 12 A; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: COAGULATION FACTOR X-ACTIVATING ENZYME LIGHT CHAIN 1; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: RVV-X LIGHT CHAIN 1, COAGULATION FACTOR X-ACTIVATING ENZYME COMPND 17 GAMMA-CHAIN, C-TYPE LECTIN-LIKE PROTEIN SUBUNIT 2, RVV-X LIGHT CHAIN- COMPND 18 B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DABOIA RUSSELLII SIAMENSIS; SOURCE 3 ORGANISM_TAXID: 343250; SOURCE 4 STRAIN: SIAMENSIS; SOURCE 5 SECRETION: VENOM; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DABOIA RUSSELLII SIAMENSIS; SOURCE 8 ORGANISM_TAXID: 343250; SOURCE 9 STRAIN: SIAMENSIS; SOURCE 10 SECRETION: VENOM; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: DABOIA RUSSELLII SIAMENSIS; SOURCE 13 ORGANISM_TAXID: 343250; SOURCE 14 STRAIN: SIAMENSIS; SOURCE 15 SECRETION: VENOM KEYWDS DISINTEGRIN, METALLOPROTEINASE, C-TYPE LECTIN, HYDROLASE, BLOOD KEYWDS 2 CLOTTING, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR T.IGARASHI,S.TAKEDA REVDAT 6 25-OCT-23 2E3X 1 HETSYN LINK REVDAT 5 29-JUL-20 2E3X 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK ATOM REVDAT 4 25-DEC-19 2E3X 1 CAVEAT JRNL REMARK LINK REVDAT 4 2 1 ATOM REVDAT 3 13-JUL-11 2E3X 1 VERSN REVDAT 2 24-FEB-09 2E3X 1 VERSN REVDAT 1 11-DEC-07 2E3X 0 JRNL AUTH S.TAKEDA,T.IGARASHI,H.MORI JRNL TITL CRYSTAL STRUCTURE OF RVV-X: AN EXAMPLE OF EVOLUTIONARY GAIN JRNL TITL 2 OF SPECIFICITY BY ADAM PROTEINASES. JRNL REF FEBS LETT. V. 581 5859 2007 JRNL REFN ISSN 0014-5793 JRNL PMID 18060879 JRNL DOI 10.1016/J.FEBSLET.2007.11.062 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 20398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1084 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE : 0.4900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 0.46 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 65 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.160 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.56 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.749 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000026193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20716 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP IN CCP4 REMARK 200 STARTING MODEL: 1QUA, 2DW0, 1J34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPLETS WERE PREPARED BY MIXING 1L OF REMARK 280 PROTEIN SOLUTION AND 1L OF RESERVOIR SOLUTION (0.1M CALCIUM REMARK 280 ACETATE, 0.1M SODIUM CACODYLATE, 10% PEG8000, PH 6.5) REMARK 280 SUPPLEMENTED WITH ONE FIFTH VOLUME OF 10% PEG3350 AS AN ADDITIVE REMARK 280 AND WERE EQUILIBRATED, TYPICALLY, FOR ONE WEEK AGAINST 1ML OF REMARK 280 RESERVOIR SOLUTION., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, E REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.35000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 45.86500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 76.46500 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, E REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 35.17500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 45.86500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 423 REMARK 465 SER A 424 REMARK 465 THR A 425 REMARK 465 THR A 426 REMARK 465 GLY A 427 REMARK 465 LEU B 0 REMARK 465 GLY B 60 REMARK 465 LYS B 61 REMARK 465 PHE B 62 REMARK 465 ILE B 63 REMARK 465 LEU C 2 REMARK 465 PHE C 123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 27 -22.80 -33.55 REMARK 500 SER A 29 -108.00 -66.58 REMARK 500 THR A 30 -71.39 32.28 REMARK 500 PRO A 49 -2.15 -59.43 REMARK 500 TRP A 62 53.81 -107.84 REMARK 500 ASP A 64 -70.48 -65.77 REMARK 500 ASP A 88 -76.32 -97.95 REMARK 500 MET A 104 130.49 -30.58 REMARK 500 CYS A 120 -24.33 81.83 REMARK 500 ALA A 122 -73.43 -40.47 REMARK 500 SER A 125 53.78 -98.55 REMARK 500 ASN A 159 68.06 -115.62 REMARK 500 SER A 166 67.17 -167.96 REMARK 500 ARG A 195 -62.16 -101.25 REMARK 500 TRP A 221 109.15 -58.47 REMARK 500 CYS A 227 -176.72 -173.23 REMARK 500 ASP A 228 100.99 -172.01 REMARK 500 ASN A 234 50.65 -108.63 REMARK 500 ALA A 242 -17.69 -48.44 REMARK 500 ALA A 243 -64.68 -105.06 REMARK 500 LYS A 248 -173.45 -66.73 REMARK 500 PRO A 249 -87.65 -37.18 REMARK 500 CYS A 258 43.78 -103.27 REMARK 500 GLN A 261 17.91 56.69 REMARK 500 CYS A 262 22.14 82.74 REMARK 500 ARG A 273 -178.19 -64.06 REMARK 500 CYS A 310 152.88 -47.57 REMARK 500 ASP A 335 -48.08 -29.56 REMARK 500 SER A 345 -167.81 -65.37 REMARK 500 CYS A 350 -94.19 -128.81 REMARK 500 PRO A 362 -16.72 -48.95 REMARK 500 LEU A 373 63.59 -105.29 REMARK 500 ASN A 374 106.59 -58.33 REMARK 500 ASN A 375 47.90 -83.80 REMARK 500 PRO A 377 160.74 -39.18 REMARK 500 ARG A 378 -14.79 89.05 REMARK 500 LYS A 380 -5.76 -170.95 REMARK 500 ASP A 391 65.94 -154.25 REMARK 500 ASP B 5 31.39 161.29 REMARK 500 TYR B 11 -12.06 81.18 REMARK 500 MET B 31 63.20 -112.37 REMARK 500 GLU B 32 -90.08 -137.38 REMARK 500 ASN B 35 151.26 -15.14 REMARK 500 ASN B 36 -22.49 59.12 REMARK 500 VAL B 40 125.34 -39.89 REMARK 500 LYS B 73 -168.05 -109.35 REMARK 500 ASP B 74 123.70 57.60 REMARK 500 LYS B 75 24.02 -69.10 REMARK 500 CYS B 79 -105.95 64.14 REMARK 500 SER B 90 -74.34 -69.63 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 145 NE2 REMARK 620 2 HIS A 149 NE2 90.7 REMARK 620 3 HIS A 155 NE2 109.3 87.5 REMARK 620 4 GM6 A 507 OAG 98.3 98.7 151.7 REMARK 620 N 1 2 3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO DEPOSITORS, A MUTATION(E127G) AND REMARK 999 DELETION WERE FOUND IN CHAIN A, COMPARING THE DATABASE REMARK 999 ENTRIES AND THE CORRESPONDING ELECTRON DENSITY MAPS. DBREF 2E3X A 1 427 UNP Q7LZ61 RVVX_DABRU 1 429 DBREF 2E3X B 0 133 UNP Q4PRD2 LC2_DABRU 25 158 DBREF 2E3X C 2 123 UNP Q4PRD1 LC1_DABRU 25 146 SEQADV 2E3X GLY A 127 UNP Q7LZ61 GLU 127 SEE REMARK 999 SEQADV 2E3X A UNP Q7LZ61 THR 273 SEE REMARK 999 SEQADV 2E3X A UNP Q7LZ61 ARG 274 SEE REMARK 999 SEQRES 1 A 427 LEU VAL SER THR SER ALA GLN PHE ASN LYS ILE PHE ILE SEQRES 2 A 427 GLU LEU VAL ILE ILE VAL ASP HIS SER MET ALA LYS LYS SEQRES 3 A 427 CYS ASN SER THR ALA THR ASN THR LYS ILE TYR GLU ILE SEQRES 4 A 427 VAL ASN SER ALA ASN GLU ILE PHE ASN PRO LEU ASN ILE SEQRES 5 A 427 HIS VAL THR LEU ILE GLY VAL GLU PHE TRP CYS ASP ARG SEQRES 6 A 427 ASP LEU ILE ASN VAL THR SER SER ALA ASP GLU THR LEU SEQRES 7 A 427 ASN SER PHE GLY GLU TRP ARG ALA SER ASP LEU MET THR SEQRES 8 A 427 ARG LYS SER HIS ASP ASN ALA LEU LEU PHE THR ASP MET SEQRES 9 A 427 ARG PHE ASP LEU ASN THR LEU GLY ILE THR PHE LEU ALA SEQRES 10 A 427 GLY MET CYS GLN ALA TYR ARG SER VAL GLY ILE VAL GLN SEQRES 11 A 427 GLU GLN GLY ASN ARG ASN PHE LYS THR ALA VAL ILE MET SEQRES 12 A 427 ALA HIS GLU LEU SER HIS ASN LEU GLY MET TYR HIS ASP SEQRES 13 A 427 GLY LYS ASN CYS ILE CYS ASN ASP SER SER CYS VAL MET SEQRES 14 A 427 SER PRO VAL LEU SER ASP GLN PRO SER LYS LEU PHE SER SEQRES 15 A 427 ASN CYS SER ILE HIS ASP TYR GLN ARG TYR LEU THR ARG SEQRES 16 A 427 TYR LYS PRO LYS CYS ILE PHE ASN PRO PRO LEU ARG LYS SEQRES 17 A 427 ASP ILE VAL SER PRO PRO VAL CYS GLY ASN GLU ILE TRP SEQRES 18 A 427 GLU GLU GLY GLU GLU CYS ASP CYS GLY SER PRO ALA ASN SEQRES 19 A 427 CYS GLN ASN PRO CYS CYS ASP ALA ALA THR CYS LYS LEU SEQRES 20 A 427 LYS PRO GLY ALA GLU CYS GLY ASN GLY LEU CYS CYS TYR SEQRES 21 A 427 GLN CYS LYS ILE LYS THR ALA GLY THR VAL CYS ARG ARG SEQRES 22 A 427 ALA ARG ASP GLU CYS ASP VAL PRO GLU HIS CYS THR GLY SEQRES 23 A 427 GLN SER ALA GLU CYS PRO ARG ASP GLN LEU GLN GLN ASN SEQRES 24 A 427 GLY LYS PRO CYS GLN ASN ASN ARG GLY TYR CYS TYR ASN SEQRES 25 A 427 GLY ASP CYS PRO ILE MET ARG ASN GLN CYS ILE SER LEU SEQRES 26 A 427 PHE GLY SER ARG ALA ASN VAL ALA LYS ASP SER CYS PHE SEQRES 27 A 427 GLN GLU ASN LEU LYS GLY SER TYR TYR GLY TYR CYS ARG SEQRES 28 A 427 LYS GLU ASN GLY ARG LYS ILE PRO CYS ALA PRO GLN ASP SEQRES 29 A 427 VAL LYS CYS GLY ARG LEU PHE CYS LEU ASN ASN SER PRO SEQRES 30 A 427 ARG ASN LYS ASN PRO CYS ASN MET HIS TYR SER CYS MET SEQRES 31 A 427 ASP GLN HIS LYS GLY MET VAL ASP PRO GLY THR LYS CYS SEQRES 32 A 427 GLU ASP GLY LYS VAL CYS ASN ASN LYS ARG GLN CYS VAL SEQRES 33 A 427 ASP VAL ASN THR ALA TYR GLN SER THR THR GLY SEQRES 1 B 134 LEU ASP CYS PRO PRO ASP SER SER LEU TYR ARG TYR PHE SEQRES 2 B 134 CYS TYR ARG VAL PHE LYS GLU HIS LYS THR TRP GLU ALA SEQRES 3 B 134 ALA GLU ARG PHE CYS MET GLU HIS PRO ASN ASN GLY HIS SEQRES 4 B 134 LEU VAL SER ILE GLU SER MET GLU GLU ALA GLU PHE VAL SEQRES 5 B 134 ALA LYS LEU LEU SER ASN THR THR GLY LYS PHE ILE THR SEQRES 6 B 134 HIS PHE TRP ILE GLY LEU MET ILE LYS ASP LYS GLU GLN SEQRES 7 B 134 GLU CYS SER SER GLU TRP SER ASP GLY SER SER VAL SER SEQRES 8 B 134 TYR ASP LYS LEU GLY LYS GLN GLU PHE ARG LYS CYS PHE SEQRES 9 B 134 VAL LEU GLU LYS GLU SER GLY TYR ARG MET TRP PHE ASN SEQRES 10 B 134 ARG ASN CYS GLU GLU ARG TYR LEU PHE VAL CYS LYS VAL SEQRES 11 B 134 PRO PRO GLU CYS SEQRES 1 C 122 LEU ASP CYS PRO SER GLY TRP LEU SER TYR GLU GLN HIS SEQRES 2 C 122 CYS TYR LYS GLY PHE ASN ASP LEU LYS ASN TRP THR ASP SEQRES 3 C 122 ALA GLU LYS PHE CYS THR GLU GLN LYS LYS GLY SER HIS SEQRES 4 C 122 LEU VAL SER LEU HIS SER ARG GLU GLU GLU LYS PHE VAL SEQRES 5 C 122 VAL ASN LEU ILE SER GLU ASN LEU GLU TYR PRO ALA THR SEQRES 6 C 122 TRP ILE GLY LEU GLY ASN MET TRP LYS ASP CYS ARG MET SEQRES 7 C 122 GLU TRP SER ASP ARG GLY ASN VAL LYS TYR LYS ALA LEU SEQRES 8 C 122 ALA GLU GLU SER TYR CYS LEU ILE MET ILE THR HIS GLU SEQRES 9 C 122 LYS VAL TRP LYS SER MET THR CYS ASN PHE ILE ALA PRO SEQRES 10 C 122 VAL VAL CYS LYS PHE MODRES 2E3X ASN A 69 ASN GLYCOSYLATION SITE MODRES 2E3X ASN A 183 ASN GLYCOSYLATION SITE MODRES 2E3X ASN B 57 ASN GLYCOSYLATION SITE MODRES 2E3X ASN C 24 ASN GLYCOSYLATION SITE HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET MAN E 3 11 HET MAN E 4 11 HET NAG A 501 14 HET ZN A 502 1 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET GM6 A 507 28 HET NAG B 201 14 HET CA B 202 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM GM6 3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP- HETNAM 2 GM6 METHYLAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GM6 GM6001 FORMUL 4 NAG 6(C8 H15 N O6) FORMUL 5 MAN 2(C6 H12 O6) FORMUL 7 ZN ZN 2+ FORMUL 8 CA 5(CA 2+) FORMUL 12 GM6 C20 H28 N4 O4 HELIX 1 1 THR A 30 ASN A 48 1 19 HELIX 2 2 SER A 73 ASP A 88 1 16 HELIX 3 3 ASP A 88 LYS A 93 1 6 HELIX 4 4 PHE A 106 THR A 110 5 5 HELIX 5 5 ARG A 135 ASN A 150 1 16 HELIX 6 6 SER A 182 LYS A 197 1 16 HELIX 7 7 LEU A 206 ILE A 210 5 5 HELIX 8 8 ILE A 317 GLY A 327 1 11 HELIX 9 9 LYS A 334 LYS A 343 5 10 HELIX 10 10 ASP A 364 GLY A 368 5 5 HELIX 11 11 VAL A 418 TYR A 422 1 5 HELIX 12 12 TRP B 23 MET B 31 1 9 HELIX 13 13 SER B 44 ASN B 57 1 14 HELIX 14 14 GLY B 95 PHE B 99 5 5 HELIX 15 15 GLU B 108 GLY B 110 5 3 HELIX 16 16 ASN C 24 LYS C 36 1 13 HELIX 17 17 SER C 46 LEU C 61 1 16 SHEET 1 A 5 ILE A 52 PHE A 61 0 SHEET 2 A 5 ILE A 11 VAL A 19 1 N ILE A 13 O HIS A 53 SHEET 3 A 5 ASN A 97 THR A 102 1 O PHE A 101 N ILE A 18 SHEET 4 A 5 VAL A 126 GLN A 130 1 O VAL A 129 N LEU A 100 SHEET 5 A 5 GLY A 112 THR A 114 -1 N ILE A 113 O ILE A 128 SHEET 1 B 2 CYS A 259 TYR A 260 0 SHEET 2 B 2 LYS A 263 ILE A 264 -1 O LYS A 263 N TYR A 260 SHEET 1 C 2 VAL A 270 ARG A 272 0 SHEET 2 C 2 GLU A 282 HIS A 283 -1 O GLU A 282 N CYS A 271 SHEET 1 D 2 ASP A 279 VAL A 280 0 SHEET 2 D 2 GLN A 295 LEU A 296 -1 O GLN A 295 N VAL A 280 SHEET 1 E 2 PRO A 302 CYS A 303 0 SHEET 2 E 2 GLY A 308 TYR A 309 -1 O GLY A 308 N CYS A 303 SHEET 1 F 2 LYS A 352 GLU A 353 0 SHEET 2 F 2 ARG A 356 LYS A 357 -1 O ARG A 356 N GLU A 353 SHEET 1 G 2 PHE A 371 CYS A 372 0 SHEET 2 G 2 ASN A 384 MET A 385 -1 O ASN A 384 N CYS A 372 SHEET 1 H 3 LYS A 402 GLU A 404 0 SHEET 2 H 3 LYS A 407 CYS A 409 -1 O LYS A 407 N GLU A 404 SHEET 3 H 3 CYS A 415 ASP A 417 -1 O VAL A 416 N VAL A 408 SHEET 1 I 6 SER B 7 TYR B 9 0 SHEET 2 I 6 PHE B 12 THR B 22 -1 O TYR B 14 N SER B 7 SHEET 3 I 6 ARG B 122 VAL B 129 -1 O VAL B 129 N CYS B 13 SHEET 4 I 6 HIS B 65 TRP B 67 1 N TRP B 67 O LEU B 124 SHEET 5 I 6 CYS B 102 GLU B 106 -1 O LEU B 105 N PHE B 66 SHEET 6 I 6 PHE B 115 ARG B 117 -1 O PHE B 115 N VAL B 104 SHEET 1 J 2 LEU B 70 ILE B 72 0 SHEET 2 J 2 MET C 79 TRP C 81 -1 O GLU C 80 N MET B 71 SHEET 1 K 4 LEU C 9 TYR C 11 0 SHEET 2 K 4 HIS C 14 GLY C 18 -1 O HIS C 14 N TYR C 11 SHEET 3 K 4 VAL C 120 LYS C 122 -1 O CYS C 121 N LYS C 17 SHEET 4 K 4 HIS C 40 LEU C 41 -1 N HIS C 40 O LYS C 122 SHEET 1 L 3 ALA C 65 GLY C 71 0 SHEET 2 L 3 TYR C 97 ILE C 102 -1 O MET C 101 N THR C 66 SHEET 3 L 3 TRP C 108 THR C 112 -1 O MET C 111 N CYS C 98 SSBOND 1 CYS A 27 CYS A 63 1555 1555 2.03 SSBOND 2 CYS A 120 CYS A 200 1555 1555 2.03 SSBOND 3 CYS A 160 CYS A 184 1555 1555 2.04 SSBOND 4 CYS A 162 CYS A 167 1555 1555 2.03 SSBOND 5 CYS A 216 CYS A 245 1555 1555 2.03 SSBOND 6 CYS A 227 CYS A 240 1555 1555 2.03 SSBOND 7 CYS A 229 CYS A 235 1555 1555 2.04 SSBOND 8 CYS A 239 CYS A 262 1555 1555 2.03 SSBOND 9 CYS A 253 CYS A 259 1555 1555 2.03 SSBOND 10 CYS A 258 CYS A 284 1555 1555 2.03 SSBOND 11 CYS A 271 CYS A 291 1555 1555 2.03 SSBOND 12 CYS A 278 CYS A 310 1555 1555 2.04 SSBOND 13 CYS A 303 CYS A 315 1555 1555 2.03 SSBOND 14 CYS A 322 CYS A 372 1555 1555 2.03 SSBOND 15 CYS A 337 CYS A 383 1555 1555 2.03 SSBOND 16 CYS A 350 CYS A 360 1555 1555 2.03 SSBOND 17 CYS A 367 CYS A 409 1555 1555 2.03 SSBOND 18 CYS A 389 CYS B 133 1555 1555 2.03 SSBOND 19 CYS A 403 CYS A 415 1555 1555 2.04 SSBOND 20 CYS B 2 CYS B 13 1555 1555 2.03 SSBOND 21 CYS B 30 CYS B 127 1555 1555 2.03 SSBOND 22 CYS B 79 CYS C 77 1555 1555 2.03 SSBOND 23 CYS B 102 CYS B 119 1555 1555 2.03 SSBOND 24 CYS C 4 CYS C 15 1555 1555 2.03 SSBOND 25 CYS C 32 CYS C 121 1555 1555 2.03 SSBOND 26 CYS C 98 CYS C 113 1555 1555 2.03 LINK ND2 ASN A 69 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 183 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 57 C1 NAG B 201 1555 1555 1.45 LINK ND2 ASN C 24 C1 NAG E 1 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.39 LINK O4 NAG E 2 C1 MAN E 3 1555 1555 1.39 LINK O6 MAN E 3 C1 MAN E 4 1555 1555 1.41 LINK NE2 HIS A 145 ZN ZN A 502 1555 1555 2.09 LINK NE2 HIS A 149 ZN ZN A 502 1555 1555 2.12 LINK NE2 HIS A 155 ZN ZN A 502 1555 1555 1.93 LINK ZN ZN A 502 OAG GM6 A 507 1555 1555 1.83 CRYST1 70.350 91.730 152.930 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006539 0.00000