HEADER DE NOVO PROTEIN 06-DEC-06 2E4E TITLE NMR STRUCTURE OF D4P/K7G MUTANT OF GPM12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GPM12; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHIGNOLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICAL PEPTIDE SYNTHESIS KEYWDS BETA-HAIRPIN, MINI-PROTEIN, CHIGNOLIN, B1 DOMAIN OF PROTEIN G, DE KEYWDS 2 NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 23 AUTHOR T.TERADA,D.SATOH,T.MIKAWA,Y.ITO,K.SHIMIZU REVDAT 3 09-MAR-22 2E4E 1 REMARK REVDAT 2 24-FEB-09 2E4E 1 VERSN REVDAT 1 05-FEB-08 2E4E 0 JRNL AUTH T.TERADA,D.SATOH,T.MIKAWA,Y.ITO,K.SHIMIZU JRNL TITL UNDERSTANDING THE ROLES OF AMINO ACID RESIDUES IN TERTIARY JRNL TITL 2 STRUCTURE FORMATION OF CHIGNOLIN BY USING MOLECULAR DYNAMICS JRNL TITL 3 SIMULATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN CORPORATION (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 119 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS. REMARK 4 REMARK 4 2E4E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000026210. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2MM GPM12(D4P/K7G) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 2D ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA 2.7, ANSIG 3.3 FOR OPENGL REMARK 210 VERSION 1.0.6, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 23 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 8 -137.71 -113.44 REMARK 500 1 PHE A 9 10.41 -141.68 REMARK 500 2 THR A 8 -138.60 -119.39 REMARK 500 3 THR A 8 -138.18 -119.00 REMARK 500 4 THR A 8 -137.16 -115.24 REMARK 500 5 THR A 8 -137.68 -115.90 REMARK 500 5 PHE A 9 10.11 -142.20 REMARK 500 6 THR A 8 -138.24 -112.61 REMARK 500 7 THR A 8 -138.24 -113.21 REMARK 500 7 PHE A 9 10.49 -140.88 REMARK 500 8 THR A 8 -137.39 -119.00 REMARK 500 9 THR A 8 -137.53 -116.31 REMARK 500 9 PHE A 9 10.58 -140.69 REMARK 500 10 THR A 8 -137.61 -119.71 REMARK 500 11 THR A 8 -137.28 -121.13 REMARK 500 12 THR A 8 -137.20 -118.51 REMARK 500 13 THR A 8 -137.46 -118.27 REMARK 500 14 THR A 8 -137.55 -123.85 REMARK 500 15 THR A 8 -138.05 -116.17 REMARK 500 15 PHE A 9 10.46 -140.38 REMARK 500 16 THR A 8 -137.49 -117.34 REMARK 500 17 THR A 8 -138.57 -116.29 REMARK 500 18 THR A 8 -137.28 -117.18 REMARK 500 18 PHE A 9 10.01 -141.14 REMARK 500 19 THR A 8 -138.00 -113.18 REMARK 500 20 THR A 8 -137.18 -119.00 REMARK 500 21 THR A 8 -137.86 -110.95 REMARK 500 21 PHE A 9 10.25 -144.25 REMARK 500 22 THR A 8 -137.90 -115.13 REMARK 500 22 PHE A 9 10.23 -140.13 REMARK 500 23 THR A 8 -137.53 -120.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE MUTANTS D4P, K7G. THESE MUTATIONS CONVERT REMARK 999 THE DISORDERD STRUCTURE OF GPM12 INTO A CHIGNOLIN-LIKE REMARK 999 ORDERED STRUCTURE. REMARK 999 SEQUENCE OF RESIDUES 2-9 OF GPM12 IS THE SAME AS REMARK 999 THAT OF RESIDUES 45-52 OF THE B1 DOMAIN OF PROTEIN G. DBREF 2E4E A 1 10 PDB 2E4E 2E4E 1 10 SEQRES 1 A 10 GLY TYR ASP PRO ALA THR GLY THR PHE GLY CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1