HEADER GENE REGULATION 21-DEC-06 2E5I TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN 2 IN HETEROGENEOUS NUCLEAR TITLE 2 RIBONUCLEOPROTEIN L-LIKE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L-LIKE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: HNRPLL; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P060515-23 KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2E5I 1 REMARK REVDAT 3 09-MAR-22 2E5I 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E5I 1 VERSN REVDAT 1 26-JUN-07 2E5I 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN 2 IN HETEROGENEOUS JRNL TITL 2 NUCLEAR RIBONUCLEOPROTEIN L-LIKE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E5I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026250. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.26MM 13C-15N PROTEIN, 20MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 208 125.02 -34.35 REMARK 500 1 SER A 212 115.28 -37.25 REMARK 500 1 PRO A 225 47.09 -74.41 REMARK 500 1 PRO A 240 -17.40 -47.97 REMARK 500 1 ILE A 255 102.72 -48.10 REMARK 500 1 ALA A 273 -33.76 -39.78 REMARK 500 1 ASN A 275 100.98 -55.27 REMARK 500 1 ALA A 281 108.62 -55.11 REMARK 500 1 TYR A 290 101.37 -34.40 REMARK 500 1 LEU A 313 -61.21 -130.40 REMARK 500 1 ARG A 315 41.84 -84.32 REMARK 500 2 SER A 197 132.54 -173.19 REMARK 500 2 SER A 198 127.84 -174.21 REMARK 500 2 LEU A 226 -63.04 -91.81 REMARK 500 2 VAL A 231 -33.58 -37.70 REMARK 500 2 PRO A 240 -17.57 -48.00 REMARK 500 2 ILE A 255 106.82 -41.12 REMARK 500 2 ASN A 275 99.41 -57.43 REMARK 500 2 ASP A 278 171.34 -58.36 REMARK 500 2 ALA A 281 102.97 -37.64 REMARK 500 2 CYS A 283 -175.13 -176.13 REMARK 500 2 CYS A 284 41.42 36.36 REMARK 500 2 TYR A 290 100.47 -35.99 REMARK 500 2 ALA A 291 159.13 -49.10 REMARK 500 3 ARG A 204 143.60 -174.63 REMARK 500 3 VAL A 231 -38.56 -38.55 REMARK 500 3 ASN A 275 101.74 -55.36 REMARK 500 3 ALA A 281 107.74 -53.30 REMARK 500 3 CYS A 283 -177.57 -174.98 REMARK 500 3 CYS A 284 38.58 39.36 REMARK 500 3 THR A 285 93.37 -47.57 REMARK 500 3 TYR A 290 105.40 -38.55 REMARK 500 3 TYR A 312 39.60 -81.37 REMARK 500 4 SER A 194 -35.47 -38.41 REMARK 500 4 ASP A 209 115.89 -166.91 REMARK 500 4 PRO A 211 152.10 -46.11 REMARK 500 4 SER A 212 40.90 -102.50 REMARK 500 4 ASN A 224 54.00 38.33 REMARK 500 4 PRO A 225 100.37 -44.67 REMARK 500 4 VAL A 231 -37.56 -38.41 REMARK 500 4 GLN A 245 -65.35 -93.62 REMARK 500 4 LYS A 251 40.99 -99.67 REMARK 500 4 ALA A 281 103.77 -51.97 REMARK 500 4 TYR A 290 105.12 -41.53 REMARK 500 4 ASN A 301 46.94 -92.34 REMARK 500 5 ASP A 209 149.79 -36.54 REMARK 500 5 SER A 212 157.85 -42.28 REMARK 500 5 PRO A 225 83.47 -47.64 REMARK 500 5 VAL A 231 -26.38 -38.96 REMARK 500 5 GLN A 245 -68.32 -104.20 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007008935.3 RELATED DB: TARGETDB DBREF 2E5I A 200 316 UNP Q921F4 HNRLL_MOUSE 200 316 SEQADV 2E5I GLY A 193 UNP Q921F4 CLONING ARTIFACT SEQADV 2E5I SER A 194 UNP Q921F4 CLONING ARTIFACT SEQADV 2E5I SER A 195 UNP Q921F4 CLONING ARTIFACT SEQADV 2E5I GLY A 196 UNP Q921F4 CLONING ARTIFACT SEQADV 2E5I SER A 197 UNP Q921F4 CLONING ARTIFACT SEQADV 2E5I SER A 198 UNP Q921F4 CLONING ARTIFACT SEQADV 2E5I GLY A 199 UNP Q921F4 CLONING ARTIFACT SEQRES 1 A 124 GLY SER SER GLY SER SER GLY LYS ARG ILE THR ARG PRO SEQRES 2 A 124 GLY ASN THR ASP ASP PRO SER GLY GLY ASN LYS VAL LEU SEQRES 3 A 124 LEU LEU SER ILE GLN ASN PRO LEU TYR PRO ILE THR VAL SEQRES 4 A 124 ASP VAL LEU TYR THR VAL CYS ASN PRO VAL GLY LYS VAL SEQRES 5 A 124 GLN ARG ILE VAL ILE PHE LYS ARG ASN GLY ILE GLN ALA SEQRES 6 A 124 MET VAL GLU PHE GLU SER VAL LEU CYS ALA GLN LYS ALA SEQRES 7 A 124 LYS ALA ALA LEU ASN GLY ALA ASP ILE TYR ALA GLY CYS SEQRES 8 A 124 CYS THR LEU LYS ILE GLU TYR ALA ARG PRO THR ARG LEU SEQRES 9 A 124 ASN VAL ILE ARG ASN ASP ASN ASP SER TRP ASP TYR THR SEQRES 10 A 124 LYS PRO TYR LEU GLY ARG ARG HELIX 1 1 THR A 230 ASN A 239 1 10 HELIX 2 2 SER A 263 ASN A 275 1 13 SHEET 1 A 5 THR A 285 GLU A 289 0 SHEET 2 A 5 VAL A 217 GLN A 223 -1 N GLN A 223 O THR A 285 SHEET 3 A 5 ILE A 255 PHE A 261 -1 O VAL A 259 N LEU A 218 SHEET 4 A 5 VAL A 244 LYS A 251 -1 N VAL A 248 O MET A 258 SHEET 5 A 5 SER A 305 ASP A 307 -1 O TRP A 306 N ILE A 247 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1