HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-DEC-06 2E5J TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN METHENYLTETRAHYDROFOLATE TITLE 2 SYNTHETASE DOMAIN CONTAINING COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHENYLTETRAHYDROFOLATE SYNTHETASE DOMAIN CONTAINING; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MTHFSD; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P060508-18 KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E5J 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E5J 1 VERSN REVDAT 1 26-JUN-07 2E5J 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN JRNL TITL 2 METHENYLTETRAHYDROFOLATE SYNTHETASE DOMAIN CONTAINING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E5J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000026251. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16MM 13C-15N PROTEIN, 20MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 288 119.85 -167.62 REMARK 500 1 PRO A 297 103.21 -45.17 REMARK 500 1 PRO A 298 160.71 -44.89 REMARK 500 1 LEU A 304 44.47 -79.42 REMARK 500 1 ALA A 305 94.23 -69.01 REMARK 500 1 ALA A 306 44.50 -95.26 REMARK 500 1 PRO A 314 168.24 -44.86 REMARK 500 1 SER A 331 57.48 -104.17 REMARK 500 1 GLN A 363 150.52 -36.43 REMARK 500 1 ALA A 375 140.78 -174.10 REMARK 500 2 SER A 288 41.16 -100.55 REMARK 500 2 ALA A 306 39.94 -95.63 REMARK 500 2 PRO A 314 172.65 -45.58 REMARK 500 2 SER A 331 53.61 -106.82 REMARK 500 2 GLN A 363 149.43 -34.52 REMARK 500 2 ALA A 375 132.73 -170.25 REMARK 500 3 PRO A 303 154.07 -46.40 REMARK 500 3 ALA A 306 35.61 34.16 REMARK 500 3 PRO A 314 163.09 -45.88 REMARK 500 3 VAL A 332 106.37 -49.13 REMARK 500 3 ARG A 343 46.70 36.78 REMARK 500 3 GLN A 363 154.57 -36.51 REMARK 500 3 ALA A 377 41.47 -86.58 REMARK 500 4 SER A 292 -55.61 -123.48 REMARK 500 4 PRO A 303 161.06 -45.50 REMARK 500 4 PRO A 314 156.80 -45.77 REMARK 500 4 SER A 331 53.42 -108.60 REMARK 500 4 ARG A 343 43.42 34.08 REMARK 500 4 GLN A 363 152.39 -39.30 REMARK 500 4 LEU A 365 124.50 -39.03 REMARK 500 5 PRO A 314 173.89 -45.42 REMARK 500 5 VAL A 319 -38.07 -39.03 REMARK 500 5 LEU A 329 30.84 -97.16 REMARK 500 5 SER A 331 54.79 -105.89 REMARK 500 5 ARG A 343 44.12 34.03 REMARK 500 5 GLN A 363 148.47 -37.16 REMARK 500 6 PRO A 303 168.43 -45.98 REMARK 500 6 ASN A 312 36.98 74.07 REMARK 500 6 PRO A 314 157.96 -45.29 REMARK 500 6 SER A 331 51.81 -112.64 REMARK 500 6 PRO A 341 -19.46 -45.65 REMARK 500 6 GLN A 363 155.39 -37.76 REMARK 500 6 LEU A 365 131.08 -34.43 REMARK 500 6 ALA A 377 90.97 -67.82 REMARK 500 7 PRO A 294 150.95 -44.48 REMARK 500 7 PRO A 303 167.19 -45.64 REMARK 500 7 LEU A 304 160.72 -48.83 REMARK 500 7 ALA A 306 46.79 -79.54 REMARK 500 7 PRO A 314 163.46 -45.14 REMARK 500 7 SER A 331 58.05 -108.76 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000739.1 RELATED DB: TARGETDB DBREF 2E5J A 294 383 UNP Q2M296 Q2M296_HUMAN 294 383 SEQADV 2E5J GLY A 287 UNP Q2M296 EXPRESSION TAG SEQADV 2E5J SER A 288 UNP Q2M296 EXPRESSION TAG SEQADV 2E5J SER A 289 UNP Q2M296 EXPRESSION TAG SEQADV 2E5J GLY A 290 UNP Q2M296 EXPRESSION TAG SEQADV 2E5J SER A 291 UNP Q2M296 EXPRESSION TAG SEQADV 2E5J SER A 292 UNP Q2M296 EXPRESSION TAG SEQADV 2E5J GLY A 293 UNP Q2M296 EXPRESSION TAG SEQRES 1 A 97 GLY SER SER GLY SER SER GLY PRO GLY SER PRO PRO GLY SEQRES 2 A 97 GLU GLY ALA PRO LEU ALA ALA ASP VAL TYR VAL GLY ASN SEQRES 3 A 97 LEU PRO ARG ASP ALA ARG VAL SER ASP LEU LYS ARG ALA SEQRES 4 A 97 LEU ARG GLU LEU GLY SER VAL PRO LEU ARG LEU THR TRP SEQRES 5 A 97 GLN GLY PRO ARG ARG ARG ALA PHE LEU HIS TYR PRO ASP SEQRES 6 A 97 SER ALA ALA ALA GLN GLN ALA VAL SER CYS LEU GLN GLY SEQRES 7 A 97 LEU ARG LEU GLY THR ASP THR LEU ARG VAL ALA LEU ALA SEQRES 8 A 97 ARG GLN GLN ARG ASP LYS HELIX 1 1 ARG A 318 LEU A 329 1 12 HELIX 2 2 ASP A 351 GLN A 363 1 13 SHEET 1 A 4 ARG A 335 GLN A 339 0 SHEET 2 A 4 ARG A 344 HIS A 348 -1 O ARG A 344 N GLN A 339 SHEET 3 A 4 ASP A 307 GLY A 311 -1 N VAL A 308 O LEU A 347 SHEET 4 A 4 ARG A 373 LEU A 376 -1 O ARG A 373 N GLY A 311 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1