HEADER HYDROLASE 22-DEC-06 2E5T
TITLE C-TERMINAL DOMAIN OF EPSILON SUBUNIT OF F1F0-ATP SYNTHASE FROM THE
TITLE 2 THERMOPHILIC BACILLUS PS3 IN THE PRESENCE OF ATP CONDITION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ATP SYNTHASE EPSILON CHAIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 88-133;
COMPND 5 SYNONYM: ATP SYNTHASE F1 SECTOR EPSILON SUBUNIT;
COMPND 6 EC: 3.6.3.14;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. PS3;
SOURCE 3 ORGANISM_TAXID: 2334;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET32A
KEYWDS ATP SYNTHASE, F1FO ATP SYNTHASE, F1-ATPASE, EPSILON SUBUNIT, ATP,
KEYWDS 2 HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.YAGI,H.AKUTSU
REVDAT 5 29-MAY-24 2E5T 1 REMARK
REVDAT 4 09-MAR-22 2E5T 1 REMARK
REVDAT 3 24-FEB-09 2E5T 1 VERSN
REVDAT 2 17-JUL-07 2E5T 1 JRNL
REVDAT 1 10-JUL-07 2E5T 0
JRNL AUTH H.YAGI,N.KAJIWARA,H.TANAKA,T.TSUKIHARA,Y.KATO-YAMADA,
JRNL AUTH 2 M.YOSHIDA,H.AKUTSU
JRNL TITL STRUCTURES OF THE THERMOPHILIC F1-ATPASE {VAREPSILON}
JRNL TITL 2 SUBUNIT SUGGESTING ATP-REGULATED ARM MOTION OF ITS
JRNL TITL 3 C-TERMINAL DOMAIN IN F1
JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 11233 2007
JRNL REFN ISSN 0027-8424
JRNL PMID 17581881
JRNL DOI 10.1073/PNAS.0701045104
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 1.0.6
REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2E5T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-06.
REMARK 100 THE DEPOSITION ID IS D_1000026261.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 303
REMARK 210 PH : 6.8
REMARK 210 IONIC STRENGTH : 10MM NACL
REMARK 210 PRESSURE : AMBIENT
REMARK 210 SAMPLE CONTENTS : 0.5MM TF1 EPSILON SUBUNIT U-15N,
REMARK 210 13C; 50MM PHOSPHATE BUFFER K; 90%
REMARK 210 H2O, 10% D2O; 0.5MM TF1 EPSILON
REMARK 210 SUBUNIT U-15N; 50MM PHOSPHATE
REMARK 210 BUFFER K; 90% H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HACACB; 3D HA(CO)CACB; 3D
REMARK 210 HAHBCONH; 3D H(CCO)NH; 3D_15N-
REMARK 210 EDITED_NOESY; 3D_13C-EDITED_NOESY
REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ
REMARK 210 SPECTROMETER MODEL : DRX
REMARK 210 SPECTROMETER MANUFACTURER : BRUKER
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 2.3, SPARKY 3.110, CYANA
REMARK 210 1.0.6
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20
REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST
REMARK 210 ENERGY
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 ILE A 111 39.68 -95.69
REMARK 500 1 MET A 132 42.35 -92.26
REMARK 500 2 MET A 132 42.35 -92.23
REMARK 500 3 ASP A 109 51.98 -94.03
REMARK 500 3 MET A 132 42.30 -92.20
REMARK 500 4 ASP A 109 54.44 -96.54
REMARK 500 4 MET A 132 42.28 -92.22
REMARK 500 5 MET A 132 42.37 -92.23
REMARK 500 6 GLN A 108 54.29 -92.14
REMARK 500 6 ASP A 109 49.17 -102.88
REMARK 500 6 MET A 132 42.35 -92.19
REMARK 500 7 ASP A 109 51.78 -91.29
REMARK 500 7 MET A 132 42.33 -92.23
REMARK 500 8 MET A 132 42.32 -92.24
REMARK 500 9 ASP A 109 53.27 -91.81
REMARK 500 9 MET A 132 42.34 -92.17
REMARK 500 10 MET A 132 42.43 -92.21
REMARK 500 11 MET A 132 42.28 -92.17
REMARK 500 12 ASP A 109 54.27 -95.53
REMARK 500 12 MET A 132 42.39 -92.21
REMARK 500 13 MET A 132 42.34 -92.25
REMARK 500 14 MET A 132 42.36 -92.23
REMARK 500 15 GLN A 108 52.32 -95.12
REMARK 500 15 ASP A 109 54.28 -94.35
REMARK 500 15 MET A 132 42.42 -92.18
REMARK 500 16 GLN A 108 49.04 -96.50
REMARK 500 16 ASP A 109 43.56 -94.94
REMARK 500 16 MET A 132 42.36 -92.20
REMARK 500 17 MET A 132 42.32 -92.18
REMARK 500 18 ASP A 109 44.57 -102.19
REMARK 500 18 MET A 132 42.37 -92.24
REMARK 500 19 ASP A 109 46.08 -99.36
REMARK 500 19 MET A 132 42.41 -92.30
REMARK 500 20 MET A 132 42.35 -92.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1AQT RELATED DB: PDB
REMARK 900 THE SAME PROTEIN FORM E.COLI.
REMARK 900 RELATED ID: 1BSN RELATED DB: PDB
REMARK 900 THE SAME PROTEIN FORM E.COLI.
REMARK 900 RELATED ID: 2E5U RELATED DB: PDB
REMARK 900 C-TERMINAL DOMAIN OF THE SAME PROTEIN
REMARK 900 RELATED ID: 2E5Y RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN IN COMPLEX WITH ATP
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THESE RESIDUES ARE AKERAERR INSTEAD OF RKSGRTP
REMARK 999 ACCORDING TO KATO-YAMADA Y., YOSHIDA M., HISABORI T.
REMARK 999 [J.BIOL.CHEM. 275:35746-35750(2000).].
DBREF 2E5T A 88 133 UNP P07678 ATPE_BACP3 88 132
SEQADV 2E5T ALA A 96 UNP P07678 ARG 96 SEE REMARK 999
SEQADV 2E5T LYS A 97 UNP P07678 LYS 97 SEE REMARK 999
SEQADV 2E5T GLU A 98 UNP P07678 SER 98 SEE REMARK 999
SEQADV 2E5T ARG A 99 UNP P07678 SEE REMARK 999
SEQADV 2E5T ALA A 100 UNP P07678 GLY 99 SEE REMARK 999
SEQADV 2E5T GLU A 101 UNP P07678 ARG 100 SEE REMARK 999
SEQADV 2E5T ARG A 102 UNP P07678 THR 101 SEE REMARK 999
SEQADV 2E5T ARG A 103 UNP P07678 PRO 102 SEE REMARK 999
SEQRES 1 A 46 ILE ASP VAL LEU ARG ALA LYS ALA ALA LYS GLU ARG ALA
SEQRES 2 A 46 GLU ARG ARG LEU GLN SER GLN GLN ASP ASP ILE ASP PHE
SEQRES 3 A 46 LYS ARG ALA GLU LEU ALA LEU LYS ARG ALA MET ASN ARG
SEQRES 4 A 46 LEU SER VAL ALA GLU MET LYS
HELIX 1 1 ASP A 89 GLN A 105 1 17
HELIX 2 2 ASP A 112 MET A 132 1 21
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1