data_2E6J # _entry.id 2E6J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2E6J pdb_00002e6j 10.2210/pdb2e6j/pdb RCSB RCSB026287 ? ? WWPDB D_1000026287 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002011753.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2E6J _pdbx_database_status.recvd_initial_deposition_date 2006-12-27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Sato, M.' 2 'Koshiba, S.' 3 'Watanabe, S.' 4 'Harada, T.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the C-terminal PapD-like domain from human HYDIN protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Sato, M.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Watanabe, S.' 4 ? primary 'Harada, T.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _cell.entry_id 2E6J _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E6J _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'HYDIN protein' _entity.formula_weight 11831.454 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PapD domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSS IILGNFEEEFLVNVNGSPEPVKLTIRGCVIGP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSS IILGNFEEEFLVNVNGSPEPVKLTIRGCVIGP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002011753.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 LYS n 1 10 ILE n 1 11 HIS n 1 12 PHE n 1 13 ASN n 1 14 PHE n 1 15 GLU n 1 16 LEU n 1 17 LEU n 1 18 ASP n 1 19 ILE n 1 20 GLY n 1 21 LYS n 1 22 VAL n 1 23 PHE n 1 24 THR n 1 25 GLY n 1 26 SER n 1 27 ALA n 1 28 HIS n 1 29 CYS n 1 30 TYR n 1 31 GLU n 1 32 ALA n 1 33 ILE n 1 34 LEU n 1 35 TYR n 1 36 ASN n 1 37 LYS n 1 38 GLY n 1 39 SER n 1 40 ILE n 1 41 ASP n 1 42 ALA n 1 43 LEU n 1 44 PHE n 1 45 ASN n 1 46 MET n 1 47 THR n 1 48 PRO n 1 49 PRO n 1 50 THR n 1 51 SER n 1 52 ALA n 1 53 LEU n 1 54 GLY n 1 55 ALA n 1 56 CYS n 1 57 PHE n 1 58 VAL n 1 59 PHE n 1 60 SER n 1 61 PRO n 1 62 LYS n 1 63 GLU n 1 64 GLY n 1 65 ILE n 1 66 ILE n 1 67 GLU n 1 68 PRO n 1 69 SER n 1 70 GLY n 1 71 VAL n 1 72 GLN n 1 73 ALA n 1 74 ILE n 1 75 GLN n 1 76 ILE n 1 77 SER n 1 78 PHE n 1 79 SER n 1 80 SER n 1 81 ILE n 1 82 ILE n 1 83 LEU n 1 84 GLY n 1 85 ASN n 1 86 PHE n 1 87 GLU n 1 88 GLU n 1 89 GLU n 1 90 PHE n 1 91 LEU n 1 92 VAL n 1 93 ASN n 1 94 VAL n 1 95 ASN n 1 96 GLY n 1 97 SER n 1 98 PRO n 1 99 GLU n 1 100 PRO n 1 101 VAL n 1 102 LYS n 1 103 LEU n 1 104 THR n 1 105 ILE n 1 106 ARG n 1 107 GLY n 1 108 CYS n 1 109 VAL n 1 110 ILE n 1 111 GLY n 1 112 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene IOH11753 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060327-17 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8TC08_HUMAN _struct_ref.pdbx_db_accession Q8TC08 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSIILGNFE EEFLVNVNGSPEPVKLTIRGCVIGP ; _struct_ref.pdbx_align_begin 480 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2E6J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8TC08 _struct_ref_seq.db_align_beg 480 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 584 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 112 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2E6J GLY A 1 ? UNP Q8TC08 ? ? 'cloning artifact' 1 1 1 2E6J SER A 2 ? UNP Q8TC08 ? ? 'cloning artifact' 2 2 1 2E6J SER A 3 ? UNP Q8TC08 ? ? 'cloning artifact' 3 3 1 2E6J GLY A 4 ? UNP Q8TC08 ? ? 'cloning artifact' 4 4 1 2E6J SER A 5 ? UNP Q8TC08 ? ? 'cloning artifact' 5 5 1 2E6J SER A 6 ? UNP Q8TC08 ? ? 'cloning artifact' 6 6 1 2E6J GLY A 7 ? UNP Q8TC08 ? ? 'cloning artifact' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.13mM PapD domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2E6J _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2E6J _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2E6J _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2E6J _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2E6J _struct.title 'Solution structure of the C-terminal PapD-like domain from human HYDIN protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2E6J _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;PapD, HYDIN, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 52 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id CYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 56 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 52 _struct_conf.end_auth_comp_id CYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 56 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 1 0.00 2 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 2 -0.09 3 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 3 -0.09 4 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 4 0.01 5 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 5 -0.02 6 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 6 -0.08 7 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 7 0.02 8 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 8 -0.06 9 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 9 -0.01 10 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 10 -0.04 11 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 11 -0.09 12 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 12 -0.01 13 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 13 0.00 14 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 14 0.02 15 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 15 0.05 16 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 16 -0.06 17 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 17 0.01 18 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 18 -0.02 19 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 19 -0.06 20 SER 60 A . ? SER 60 A PRO 61 A ? PRO 61 A 20 -0.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 10 ? PHE A 12 ? ILE A 10 PHE A 12 A 2 HIS A 28 ? ASN A 36 ? HIS A 28 ASN A 36 A 3 VAL A 71 ? PHE A 78 ? VAL A 71 PHE A 78 A 4 VAL A 58 ? SER A 60 ? VAL A 58 SER A 60 B 1 LEU A 16 ? PHE A 23 ? LEU A 16 PHE A 23 B 2 LYS A 102 ? ILE A 110 ? LYS A 102 ILE A 110 B 3 GLY A 84 ? VAL A 94 ? GLY A 84 VAL A 94 C 1 GLU A 63 ? ILE A 66 ? GLU A 63 ILE A 66 C 2 ALA A 42 ? MET A 46 ? ALA A 42 MET A 46 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 11 ? N HIS A 11 O TYR A 35 ? O TYR A 35 A 2 3 N TYR A 30 ? N TYR A 30 O ILE A 76 ? O ILE A 76 A 3 4 O SER A 77 ? O SER A 77 N VAL A 58 ? N VAL A 58 B 1 2 N VAL A 22 ? N VAL A 22 O CYS A 108 ? O CYS A 108 B 2 3 O VAL A 109 ? O VAL A 109 N GLY A 84 ? N GLY A 84 C 1 2 O ILE A 66 ? O ILE A 66 N ALA A 42 ? N ALA A 42 # _database_PDB_matrix.entry_id 2E6J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2E6J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 CYS 108 108 108 CYS CYS A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 PRO 112 112 112 PRO PRO A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-03 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 37 ? ? -89.87 31.20 2 1 SER A 79 ? ? -161.12 119.86 3 1 SER A 97 ? ? -39.35 140.85 4 2 LYS A 37 ? ? -98.11 42.74 5 2 ASP A 41 ? ? -35.87 138.03 6 2 LYS A 62 ? ? -37.47 -28.20 7 2 SER A 79 ? ? -171.43 114.17 8 2 ASN A 85 ? ? -46.74 155.51 9 3 HIS A 11 ? ? -174.12 134.79 10 3 ASN A 13 ? ? -39.56 -26.34 11 3 LYS A 37 ? ? -107.91 43.47 12 3 ASP A 41 ? ? -34.93 111.50 13 3 ALA A 55 ? ? -84.53 30.73 14 3 LYS A 62 ? ? -39.04 -32.61 15 3 GLU A 67 ? ? -43.82 152.17 16 3 SER A 79 ? ? -173.61 109.91 17 3 ASN A 95 ? ? -48.78 100.32 18 4 LYS A 37 ? ? -94.59 43.42 19 4 ASP A 41 ? ? -34.74 124.24 20 4 LYS A 62 ? ? -35.82 -30.70 21 4 GLU A 67 ? ? -37.83 152.26 22 4 SER A 79 ? ? -161.54 116.65 23 4 LEU A 83 ? ? -48.81 160.67 24 5 LYS A 62 ? ? -35.48 -31.29 25 5 GLU A 67 ? ? -39.96 149.44 26 5 SER A 79 ? ? -174.88 112.79 27 5 ILE A 82 ? ? -62.10 84.62 28 5 LEU A 83 ? ? -47.38 158.15 29 6 LYS A 37 ? ? -102.03 40.12 30 6 ASP A 41 ? ? -37.80 139.17 31 6 PRO A 49 ? ? -69.84 -178.29 32 6 LYS A 62 ? ? -34.81 -32.25 33 6 GLU A 67 ? ? -41.38 150.05 34 6 SER A 79 ? ? -165.22 118.04 35 6 PRO A 100 ? ? -69.80 -174.02 36 7 SER A 3 ? ? -126.14 -59.24 37 7 PHE A 23 ? ? -41.58 151.68 38 7 LYS A 37 ? ? -93.37 44.44 39 7 LYS A 62 ? ? -36.59 -32.70 40 7 GLU A 67 ? ? -35.51 147.20 41 7 ASN A 85 ? ? -48.09 155.01 42 7 PRO A 100 ? ? -69.75 -163.75 43 7 CYS A 108 ? ? -169.53 113.93 44 8 SER A 5 ? ? -66.35 81.97 45 8 LYS A 62 ? ? -34.27 -32.70 46 8 GLU A 67 ? ? -40.88 151.49 47 8 SER A 79 ? ? -168.45 108.96 48 8 SER A 97 ? ? -37.27 143.26 49 8 PRO A 100 ? ? -69.77 -169.55 50 9 LYS A 9 ? ? -71.85 -71.44 51 9 ILE A 10 ? ? -38.14 154.71 52 9 ASN A 13 ? ? -34.75 -34.35 53 9 PHE A 23 ? ? -49.06 156.21 54 9 LYS A 37 ? ? -94.75 46.24 55 9 CYS A 56 ? ? -35.78 -37.07 56 9 SER A 79 ? ? -167.14 111.03 57 9 ILE A 82 ? ? -49.11 91.19 58 10 SER A 3 ? ? -170.82 140.58 59 10 ASN A 13 ? ? -39.76 -32.11 60 10 LYS A 62 ? ? -39.65 -32.73 61 10 GLU A 67 ? ? -39.32 151.28 62 10 SER A 79 ? ? -172.45 107.59 63 10 ASN A 95 ? ? -58.37 106.74 64 10 VAL A 101 ? ? -67.49 96.70 65 10 CYS A 108 ? ? -171.71 119.93 66 11 LYS A 9 ? ? -56.40 -73.57 67 11 SER A 26 ? ? -56.46 179.17 68 11 LYS A 37 ? ? -103.59 42.27 69 11 ASP A 41 ? ? -34.34 135.03 70 11 LYS A 62 ? ? -34.51 -32.61 71 12 LYS A 37 ? ? -106.34 44.33 72 12 ASP A 41 ? ? -39.52 126.65 73 12 LYS A 62 ? ? -37.62 -28.26 74 12 GLU A 63 ? ? -172.70 143.45 75 12 GLU A 67 ? ? -49.57 152.17 76 12 SER A 79 ? ? -171.33 115.26 77 13 ASN A 13 ? ? -37.46 -31.69 78 13 LYS A 37 ? ? -96.39 43.57 79 13 ASP A 41 ? ? -39.47 137.56 80 13 LYS A 62 ? ? -34.65 -32.63 81 13 GLU A 67 ? ? -35.45 149.93 82 13 SER A 79 ? ? -173.93 107.53 83 14 SER A 5 ? ? -35.17 152.03 84 14 ASP A 41 ? ? -38.69 119.34 85 14 SER A 79 ? ? -174.50 115.70 86 15 SER A 5 ? ? -60.72 86.89 87 15 PRO A 8 ? ? -69.74 -165.64 88 15 ASP A 41 ? ? -35.30 147.54 89 15 GLU A 67 ? ? -38.01 155.14 90 15 SER A 79 ? ? -160.07 108.96 91 15 SER A 97 ? ? -39.17 146.28 92 16 SER A 3 ? ? -173.06 125.05 93 16 SER A 5 ? ? -65.90 80.54 94 16 PRO A 8 ? ? -69.76 -179.73 95 16 LYS A 37 ? ? -92.83 33.96 96 16 ASP A 41 ? ? -37.90 117.88 97 16 LYS A 62 ? ? -37.74 -27.71 98 16 SER A 79 ? ? -171.93 110.30 99 16 LEU A 83 ? ? -48.13 165.29 100 17 SER A 5 ? ? -35.62 129.85 101 17 SER A 26 ? ? -45.41 151.71 102 17 LYS A 37 ? ? -96.24 44.90 103 17 ASP A 41 ? ? -38.76 129.48 104 17 ASN A 45 ? ? -173.30 141.07 105 17 GLU A 67 ? ? -43.38 152.49 106 17 SER A 79 ? ? -173.76 106.19 107 17 SER A 97 ? ? -171.96 140.70 108 18 SER A 5 ? ? -124.45 -55.55 109 18 PHE A 23 ? ? -48.22 162.18 110 18 LYS A 37 ? ? -91.32 45.60 111 18 CYS A 56 ? ? -38.42 -34.77 112 18 GLU A 63 ? ? -173.81 141.59 113 18 GLU A 67 ? ? -44.57 152.21 114 18 SER A 79 ? ? -165.91 112.82 115 18 CYS A 108 ? ? -171.17 112.91 116 19 SER A 5 ? ? -49.81 165.78 117 19 SER A 26 ? ? -36.16 152.72 118 19 LYS A 37 ? ? -99.69 34.38 119 19 GLU A 63 ? ? -173.74 145.86 120 19 SER A 79 ? ? -163.06 107.72 121 20 PRO A 8 ? ? -69.79 -177.48 122 20 PHE A 23 ? ? -39.18 152.53 123 20 LYS A 37 ? ? -96.92 41.72 124 20 GLU A 67 ? ? -43.33 153.75 125 20 ASN A 85 ? ? -42.66 157.57 126 20 SER A 97 ? ? -35.46 140.94 #