HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-DEC-06 2E6J TITLE SOLUTION STRUCTURE OF THE C-TERMINAL PAPD-LIKE DOMAIN FROM HUMAN HYDIN TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PAPD DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IOH11753; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060327-17; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PAPD, HYDIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2E6J 1 REMARK REVDAT 3 09-MAR-22 2E6J 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E6J 1 VERSN REVDAT 1 03-JUL-07 2E6J 0 JRNL AUTH H.LI,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL PAPD-LIKE DOMAIN FROM JRNL TITL 2 HUMAN HYDIN PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E6J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026287. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM PAPD DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 37 31.20 -89.87 REMARK 500 1 SER A 79 119.86 -161.12 REMARK 500 1 SER A 97 140.85 -39.35 REMARK 500 2 LYS A 37 42.74 -98.11 REMARK 500 2 ASP A 41 138.03 -35.87 REMARK 500 2 LYS A 62 -28.20 -37.47 REMARK 500 2 SER A 79 114.17 -171.43 REMARK 500 2 ASN A 85 155.51 -46.74 REMARK 500 3 HIS A 11 134.79 -174.12 REMARK 500 3 ASN A 13 -26.34 -39.56 REMARK 500 3 LYS A 37 43.47 -107.91 REMARK 500 3 ASP A 41 111.50 -34.93 REMARK 500 3 ALA A 55 30.73 -84.53 REMARK 500 3 LYS A 62 -32.61 -39.04 REMARK 500 3 GLU A 67 152.17 -43.82 REMARK 500 3 SER A 79 109.91 -173.61 REMARK 500 3 ASN A 95 100.32 -48.78 REMARK 500 4 LYS A 37 43.42 -94.59 REMARK 500 4 ASP A 41 124.24 -34.74 REMARK 500 4 LYS A 62 -30.70 -35.82 REMARK 500 4 GLU A 67 152.26 -37.83 REMARK 500 4 SER A 79 116.65 -161.54 REMARK 500 4 LEU A 83 160.67 -48.81 REMARK 500 5 LYS A 62 -31.29 -35.48 REMARK 500 5 GLU A 67 149.44 -39.96 REMARK 500 5 SER A 79 112.79 -174.88 REMARK 500 5 ILE A 82 84.62 -62.10 REMARK 500 5 LEU A 83 158.15 -47.38 REMARK 500 6 LYS A 37 40.12 -102.03 REMARK 500 6 ASP A 41 139.17 -37.80 REMARK 500 6 PRO A 49 -178.29 -69.84 REMARK 500 6 LYS A 62 -32.25 -34.81 REMARK 500 6 GLU A 67 150.05 -41.38 REMARK 500 6 SER A 79 118.04 -165.22 REMARK 500 6 PRO A 100 -174.02 -69.80 REMARK 500 7 SER A 3 -59.24 -126.14 REMARK 500 7 PHE A 23 151.68 -41.58 REMARK 500 7 LYS A 37 44.44 -93.37 REMARK 500 7 LYS A 62 -32.70 -36.59 REMARK 500 7 GLU A 67 147.20 -35.51 REMARK 500 7 ASN A 85 155.01 -48.09 REMARK 500 7 PRO A 100 -163.75 -69.75 REMARK 500 7 CYS A 108 113.93 -169.53 REMARK 500 8 SER A 5 81.97 -66.35 REMARK 500 8 LYS A 62 -32.70 -34.27 REMARK 500 8 GLU A 67 151.49 -40.88 REMARK 500 8 SER A 79 108.96 -168.45 REMARK 500 8 SER A 97 143.26 -37.27 REMARK 500 8 PRO A 100 -169.55 -69.77 REMARK 500 9 LYS A 9 -71.44 -71.85 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011753.2 RELATED DB: TARGETDB DBREF 2E6J A 8 112 UNP Q8TC08 Q8TC08_HUMAN 480 584 SEQADV 2E6J GLY A 1 UNP Q8TC08 CLONING ARTIFACT SEQADV 2E6J SER A 2 UNP Q8TC08 CLONING ARTIFACT SEQADV 2E6J SER A 3 UNP Q8TC08 CLONING ARTIFACT SEQADV 2E6J GLY A 4 UNP Q8TC08 CLONING ARTIFACT SEQADV 2E6J SER A 5 UNP Q8TC08 CLONING ARTIFACT SEQADV 2E6J SER A 6 UNP Q8TC08 CLONING ARTIFACT SEQADV 2E6J GLY A 7 UNP Q8TC08 CLONING ARTIFACT SEQRES 1 A 112 GLY SER SER GLY SER SER GLY PRO LYS ILE HIS PHE ASN SEQRES 2 A 112 PHE GLU LEU LEU ASP ILE GLY LYS VAL PHE THR GLY SER SEQRES 3 A 112 ALA HIS CYS TYR GLU ALA ILE LEU TYR ASN LYS GLY SER SEQRES 4 A 112 ILE ASP ALA LEU PHE ASN MET THR PRO PRO THR SER ALA SEQRES 5 A 112 LEU GLY ALA CYS PHE VAL PHE SER PRO LYS GLU GLY ILE SEQRES 6 A 112 ILE GLU PRO SER GLY VAL GLN ALA ILE GLN ILE SER PHE SEQRES 7 A 112 SER SER ILE ILE LEU GLY ASN PHE GLU GLU GLU PHE LEU SEQRES 8 A 112 VAL ASN VAL ASN GLY SER PRO GLU PRO VAL LYS LEU THR SEQRES 9 A 112 ILE ARG GLY CYS VAL ILE GLY PRO HELIX 1 1 ALA A 52 CYS A 56 1 5 SHEET 1 A 4 ILE A 10 PHE A 12 0 SHEET 2 A 4 HIS A 28 ASN A 36 -1 O TYR A 35 N HIS A 11 SHEET 3 A 4 VAL A 71 PHE A 78 -1 O ILE A 76 N TYR A 30 SHEET 4 A 4 VAL A 58 SER A 60 -1 N VAL A 58 O SER A 77 SHEET 1 B 3 LEU A 16 PHE A 23 0 SHEET 2 B 3 LYS A 102 ILE A 110 1 O CYS A 108 N VAL A 22 SHEET 3 B 3 GLY A 84 VAL A 94 -1 N GLY A 84 O VAL A 109 SHEET 1 C 2 GLU A 63 ILE A 66 0 SHEET 2 C 2 ALA A 42 MET A 46 -1 N ALA A 42 O ILE A 66 CISPEP 1 SER A 60 PRO A 61 1 0.00 CISPEP 2 SER A 60 PRO A 61 2 -0.09 CISPEP 3 SER A 60 PRO A 61 3 -0.09 CISPEP 4 SER A 60 PRO A 61 4 0.01 CISPEP 5 SER A 60 PRO A 61 5 -0.02 CISPEP 6 SER A 60 PRO A 61 6 -0.08 CISPEP 7 SER A 60 PRO A 61 7 0.02 CISPEP 8 SER A 60 PRO A 61 8 -0.06 CISPEP 9 SER A 60 PRO A 61 9 -0.01 CISPEP 10 SER A 60 PRO A 61 10 -0.04 CISPEP 11 SER A 60 PRO A 61 11 -0.09 CISPEP 12 SER A 60 PRO A 61 12 -0.01 CISPEP 13 SER A 60 PRO A 61 13 0.00 CISPEP 14 SER A 60 PRO A 61 14 0.02 CISPEP 15 SER A 60 PRO A 61 15 0.05 CISPEP 16 SER A 60 PRO A 61 16 -0.06 CISPEP 17 SER A 60 PRO A 61 17 0.01 CISPEP 18 SER A 60 PRO A 61 18 -0.02 CISPEP 19 SER A 60 PRO A 61 19 -0.06 CISPEP 20 SER A 60 PRO A 61 20 -0.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1