HEADER TRANSCRIPTION 27-DEC-06 2E6N TITLE SOLUTION STRUCTURE OF THE TUDOR DOMAIN OF STAPHYLOCOCCAL NUCLEASE TITLE 2 DOMAIN-CONTAINING PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TUDOR DOMAIN; COMPND 5 SYNONYM: P100 CO-ACTIVATOR, 100 KDA COACTIVATOR, EBNA2 COACTIVATOR COMPND 6 P100; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SND1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060731-01; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS YUDOR DOMAIN, STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1, KEYWDS 2 P100 CO-ACTIVATOR, 100 KDA COACTIVATOR, EBNA2 COACTIVATOR P100, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E6N 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E6N 1 VERSN REVDAT 1 03-JUL-07 2E6N 0 JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE TUDOR DOMAIN OF STAPHYLOCOCCAL JRNL TITL 2 NUCLEASE DOMAIN-CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E6N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026291. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9814, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 20 -71.56 -66.79 REMARK 500 1 ARG A 36 105.80 -53.44 REMARK 500 1 PRO A 60 -17.16 -48.00 REMARK 500 2 ASN A 20 -71.57 -67.06 REMARK 500 2 ARG A 36 103.96 -54.58 REMARK 500 2 PRO A 60 -17.30 -47.93 REMARK 500 2 ALA A 95 108.61 -59.19 REMARK 500 2 GLU A 99 32.16 -87.02 REMARK 500 2 PHE A 102 36.55 -88.98 REMARK 500 3 SER A 2 -58.47 -127.53 REMARK 500 3 SER A 6 136.21 -173.68 REMARK 500 3 ASN A 20 -71.42 -66.63 REMARK 500 3 PRO A 60 -17.12 -47.98 REMARK 500 4 ASN A 20 -71.74 -67.43 REMARK 500 4 PRO A 60 -17.03 -47.99 REMARK 500 4 GLU A 99 32.42 -84.36 REMARK 500 4 PHE A 102 42.33 -97.06 REMARK 500 5 SER A 5 143.43 -171.21 REMARK 500 5 ASN A 20 -71.29 -66.85 REMARK 500 5 ARG A 36 108.07 -53.82 REMARK 500 5 PRO A 60 -17.01 -47.99 REMARK 500 5 GLU A 99 30.88 -84.64 REMARK 500 6 ASN A 20 -70.81 -67.36 REMARK 500 6 PRO A 60 -17.22 -47.96 REMARK 500 6 GLU A 99 30.72 -85.93 REMARK 500 6 PHE A 102 38.21 -91.85 REMARK 500 7 ASN A 20 -71.53 -66.48 REMARK 500 7 ARG A 36 102.43 -57.06 REMARK 500 7 PRO A 60 -17.47 -47.95 REMARK 500 7 PHE A 102 44.87 -90.38 REMARK 500 8 ASN A 20 -71.73 -65.90 REMARK 500 8 ARG A 36 109.02 -59.21 REMARK 500 8 PRO A 60 -17.12 -47.98 REMARK 500 8 GLU A 99 32.10 -85.38 REMARK 500 8 PHE A 102 31.59 -89.58 REMARK 500 9 ASN A 20 -71.29 -66.76 REMARK 500 9 PRO A 60 -17.01 -47.98 REMARK 500 9 SER A 89 151.38 -49.87 REMARK 500 9 ALA A 97 155.39 -46.57 REMARK 500 10 ASN A 20 -71.57 -66.24 REMARK 500 10 PRO A 60 -16.81 -47.99 REMARK 500 10 PHE A 102 41.54 -87.11 REMARK 500 11 SER A 2 42.28 36.10 REMARK 500 11 ASN A 20 -71.66 -66.22 REMARK 500 11 ARG A 36 102.36 -56.90 REMARK 500 11 PRO A 60 -17.41 -47.93 REMARK 500 11 GLU A 99 33.89 -85.53 REMARK 500 11 PHE A 102 37.32 -92.05 REMARK 500 12 ASN A 20 -71.64 -66.32 REMARK 500 12 PRO A 60 -16.22 -48.01 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001563.1 RELATED DB: TARGETDB DBREF 2E6N A 8 104 UNP Q7KZF4 SND1_HUMAN 704 800 SEQADV 2E6N GLY A 1 UNP Q7KZF4 CLONING ARTIFACT SEQADV 2E6N SER A 2 UNP Q7KZF4 CLONING ARTIFACT SEQADV 2E6N SER A 3 UNP Q7KZF4 CLONING ARTIFACT SEQADV 2E6N GLY A 4 UNP Q7KZF4 CLONING ARTIFACT SEQADV 2E6N SER A 5 UNP Q7KZF4 CLONING ARTIFACT SEQADV 2E6N SER A 6 UNP Q7KZF4 CLONING ARTIFACT SEQADV 2E6N GLY A 7 UNP Q7KZF4 CLONING ARTIFACT SEQRES 1 A 104 GLY SER SER GLY SER SER GLY GLY THR GLN LEU GLU LYS SEQRES 2 A 104 LEU MET GLU ASN MET ARG ASN ASP ILE ALA SER HIS PRO SEQRES 3 A 104 PRO VAL GLU GLY SER TYR ALA PRO ARG ARG GLY GLU PHE SEQRES 4 A 104 CYS ILE ALA LYS PHE VAL ASP GLY GLU TRP TYR ARG ALA SEQRES 5 A 104 ARG VAL GLU LYS VAL GLU SER PRO ALA LYS ILE HIS VAL SEQRES 6 A 104 PHE TYR ILE ASP TYR GLY ASN ARG GLU VAL LEU PRO SER SEQRES 7 A 104 THR ARG LEU GLY THR LEU SER PRO ALA PHE SER THR ARG SEQRES 8 A 104 VAL LEU PRO ALA GLN ALA THR GLU TYR ALA PHE ALA PHE HELIX 1 1 GLN A 10 SER A 24 1 15 HELIX 2 2 TYR A 100 ALA A 103 1 4 SHEET 1 A 5 ARG A 73 LEU A 76 0 SHEET 2 A 5 ILE A 63 TYR A 67 -1 N TYR A 67 O ASN A 72 SHEET 3 A 5 TRP A 49 VAL A 57 -1 N LYS A 56 O HIS A 64 SHEET 4 A 5 PHE A 39 PHE A 44 -1 N ALA A 42 O TYR A 50 SHEET 5 A 5 LEU A 81 GLY A 82 -1 O GLY A 82 N ILE A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1