HEADER TRANSCRIPTION, CELL CYCLE 28-DEC-06 2E6O TITLE SOLUTION STRUCTURE OF THE HMG BOX DOMAIN FROM HUMAN HMG-BOX TITLE 2 TRANSCRIPTION FACTOR 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG BOX-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG-BOX; COMPND 5 SYNONYM: HMG BOX TRANSCRIPTION FACTOR 1, HIGH MOBILITY GROUP BOX COMPND 6 TRANSCRIPTION FACTOR 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HBP1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060206-06; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS HMG-BOX DOMAIN, HMG BOX CONTAINING PROTEIN 1, HMG-BOX TRANSCRIPTION KEYWDS 2 FACTOR 1, HIGH MOBILITY GROUP BOX TRANSCRIPTION FACTOR 1, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, TRANSCRIPTION, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E6O 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E6O 1 VERSN REVDAT 1 03-JUL-07 2E6O 0 JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HMG BOX DOMAIN FROM HUMAN HMG-BOX JRNL TITL 2 TRANSCRIPTION FACTOR 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E6O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026292. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16MM 13C,15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9816, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMIC REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 140.59 -173.48 REMARK 500 1 SER A 5 -175.52 -59.52 REMARK 500 1 SER A 14 72.44 59.24 REMARK 500 1 PRO A 15 -174.79 -69.76 REMARK 500 1 CYS A 18 177.31 -58.94 REMARK 500 1 ARG A 33 -73.22 -60.16 REMARK 500 1 MET A 59 173.65 -54.38 REMARK 500 1 ASN A 82 71.31 -115.51 REMARK 500 2 ARG A 33 -70.07 -61.22 REMARK 500 2 ASN A 82 73.41 -114.79 REMARK 500 2 CYS A 85 33.91 -95.89 REMARK 500 3 SER A 2 55.20 -117.72 REMARK 500 3 TRP A 86 52.66 -112.95 REMARK 500 4 SER A 5 99.81 -67.48 REMARK 500 4 CYS A 18 69.89 -113.42 REMARK 500 4 ASN A 23 171.62 -54.13 REMARK 500 4 ASN A 82 71.50 -118.11 REMARK 500 4 TRP A 86 43.49 -109.36 REMARK 500 5 VAL A 10 73.45 54.24 REMARK 500 5 PRO A 15 80.25 -69.74 REMARK 500 5 ASN A 23 171.14 -52.91 REMARK 500 5 ARG A 33 -70.25 -67.49 REMARK 500 5 ASN A 82 69.88 -118.63 REMARK 500 6 ASN A 23 -176.16 -58.79 REMARK 500 6 MET A 59 175.94 -56.53 REMARK 500 6 ASN A 82 71.08 -119.17 REMARK 500 7 CYS A 18 95.52 -61.74 REMARK 500 7 ARG A 20 160.60 63.16 REMARK 500 7 PRO A 21 91.10 -69.79 REMARK 500 7 ASN A 23 173.27 -54.60 REMARK 500 7 MET A 59 174.30 -57.14 REMARK 500 7 ASN A 82 73.79 -118.87 REMARK 500 8 SER A 11 -53.59 -123.22 REMARK 500 8 SER A 14 70.06 -179.30 REMARK 500 8 ASN A 82 73.45 -115.70 REMARK 500 9 SER A 11 45.09 -100.61 REMARK 500 9 ARG A 20 160.60 63.04 REMARK 500 9 ARG A 33 -73.15 -66.20 REMARK 500 9 TRP A 86 59.74 -96.09 REMARK 500 10 SER A 14 160.48 62.98 REMARK 500 10 ASN A 23 177.32 -58.54 REMARK 500 10 ARG A 33 -70.30 -61.47 REMARK 500 10 MET A 59 175.44 -58.02 REMARK 500 11 PRO A 21 89.76 -69.69 REMARK 500 11 ASN A 23 -174.37 -68.16 REMARK 500 11 ASN A 82 73.70 -113.73 REMARK 500 11 ASP A 84 51.80 -113.13 REMARK 500 12 SER A 14 73.01 -116.94 REMARK 500 12 CYS A 18 178.43 -58.83 REMARK 500 12 PRO A 21 -175.08 -69.79 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002014558.1 RELATED DB: TARGETDB DBREF 2E6O A 8 87 UNP O60381 HBP1_HUMAN 424 503 SEQADV 2E6O GLY A 1 UNP O60381 CLONING ARTIFACT SEQADV 2E6O SER A 2 UNP O60381 CLONING ARTIFACT SEQADV 2E6O SER A 3 UNP O60381 CLONING ARTIFACT SEQADV 2E6O GLY A 4 UNP O60381 CLONING ARTIFACT SEQADV 2E6O SER A 5 UNP O60381 CLONING ARTIFACT SEQADV 2E6O SER A 6 UNP O60381 CLONING ARTIFACT SEQADV 2E6O GLY A 7 UNP O60381 CLONING ARTIFACT SEQRES 1 A 87 GLY SER SER GLY SER SER GLY GLY THR VAL SER ALA THR SEQRES 2 A 87 SER PRO ASN LYS CYS LYS ARG PRO MET ASN ALA PHE MET SEQRES 3 A 87 LEU PHE ALA LYS LYS TYR ARG VAL GLU TYR THR GLN MET SEQRES 4 A 87 TYR PRO GLY LYS ASP ASN ARG ALA ILE SER VAL ILE LEU SEQRES 5 A 87 GLY ASP ARG TRP LYS LYS MET LYS ASN GLU GLU ARG ARG SEQRES 6 A 87 MET TYR THR LEU GLU ALA LYS ALA LEU ALA GLU GLU GLN SEQRES 7 A 87 LYS ARG LEU ASN PRO ASP CYS TRP LYS HELIX 1 1 ASN A 23 TYR A 32 1 10 HELIX 2 2 TYR A 32 TYR A 40 1 9 HELIX 3 3 ASP A 44 MET A 59 1 16 HELIX 4 4 LYS A 60 ASN A 82 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1