HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-JAN-07 2E72 TITLE SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF HUMAN KIAA0461 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POGO TRANSPOSABLE ELEMENT WITH ZNF DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POGZ, KIAA0461; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050912-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC FINGER DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E72 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E72 1 VERSN REVDAT 1 10-JUL-07 2E72 0 JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF HUMAN JRNL TITL 2 KIAA0461 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E72 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026306. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.31MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O; REMARK 210 0.05MM ZNCL2+1MM IDA, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 NMRVIEW 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 367 105.65 -51.61 REMARK 500 1 SER A 368 88.40 -62.66 REMARK 500 1 ARG A 374 102.46 -36.66 REMARK 500 1 PRO A 378 3.13 -69.75 REMARK 500 1 ARG A 379 -75.10 -106.11 REMARK 500 1 VAL A 402 101.11 -38.96 REMARK 500 2 PRO A 378 2.80 -69.82 REMARK 500 2 ARG A 379 -65.53 -106.42 REMARK 500 2 MET A 401 46.08 -89.63 REMARK 500 3 SER A 367 161.13 -45.49 REMARK 500 3 GLN A 370 166.64 -47.55 REMARK 500 3 ASP A 371 -51.89 -130.81 REMARK 500 3 PRO A 378 3.70 -69.77 REMARK 500 3 ASN A 381 25.48 40.97 REMARK 500 3 PRO A 399 3.11 -69.72 REMARK 500 3 SER A 406 154.61 -48.66 REMARK 500 4 SER A 368 41.93 -83.71 REMARK 500 4 PRO A 378 3.14 -69.69 REMARK 500 4 ARG A 379 -69.17 -104.97 REMARK 500 4 VAL A 402 106.50 -40.92 REMARK 500 5 SER A 364 147.79 -35.72 REMARK 500 5 PRO A 378 4.07 -69.72 REMARK 500 5 ASN A 381 28.47 37.70 REMARK 500 5 PRO A 399 0.62 -69.82 REMARK 500 5 MET A 401 43.84 -82.91 REMARK 500 6 PRO A 378 3.73 -69.80 REMARK 500 6 MET A 401 50.69 -97.03 REMARK 500 7 PRO A 378 4.75 -69.78 REMARK 500 7 ASN A 381 27.20 38.44 REMARK 500 7 MET A 401 47.65 -85.54 REMARK 500 7 VAL A 402 -52.13 -133.87 REMARK 500 8 PRO A 378 5.07 -69.78 REMARK 500 8 ASN A 381 33.57 34.13 REMARK 500 8 PRO A 399 0.96 -69.79 REMARK 500 8 MET A 401 76.39 -119.06 REMARK 500 8 GLU A 403 104.22 -42.53 REMARK 500 9 CYS A 377 119.61 -35.13 REMARK 500 9 PRO A 378 5.84 -69.78 REMARK 500 9 PRO A 399 0.44 -69.82 REMARK 500 9 MET A 401 70.41 -118.35 REMARK 500 10 PRO A 378 2.25 -69.81 REMARK 500 10 ARG A 379 -67.34 -106.21 REMARK 500 10 ASN A 381 47.62 70.07 REMARK 500 10 VAL A 402 118.65 -34.78 REMARK 500 10 GLU A 403 172.92 -48.09 REMARK 500 10 SER A 410 42.06 -92.57 REMARK 500 11 PRO A 378 5.16 -69.82 REMARK 500 11 ASN A 381 25.68 46.87 REMARK 500 11 HIS A 393 -39.20 -38.39 REMARK 500 11 VAL A 402 108.56 -49.22 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 377 SG REMARK 620 2 CYS A 380 SG 103.6 REMARK 620 3 HIS A 393 NE2 111.2 85.8 REMARK 620 4 CYS A 397 SG 117.9 118.3 115.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000449.1 RELATED DB: TARGETDB DBREF 2E72 A 370 405 UNP Q7Z3K3 POGZ_HUMAN 370 405 SEQADV 2E72 GLY A 363 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 364 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 365 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 GLY A 366 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 367 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 368 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 GLY A 369 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 406 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 GLY A 407 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 PRO A 408 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 409 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 410 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 GLY A 411 UNP Q7Z3K3 CLONING ARTIFACT SEQRES 1 A 49 GLY SER SER GLY SER SER GLY GLN ASP GLY GLY ARG LYS SEQRES 2 A 49 ILE CYS PRO ARG CYS ASN ALA GLN PHE ARG VAL THR GLU SEQRES 3 A 49 ALA LEU ARG GLY HIS MET CYS TYR CYS CYS PRO GLU MET SEQRES 4 A 49 VAL GLU TYR GLN SER GLY PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 VAL A 386 CYS A 398 1 13 LINK ZN ZN A 201 SG CYS A 377 1555 1555 2.34 LINK ZN ZN A 201 SG CYS A 380 1555 1555 2.33 LINK ZN ZN A 201 NE2 HIS A 393 1555 1555 2.37 LINK ZN ZN A 201 SG CYS A 397 1555 1555 2.33 CISPEP 1 GLY A 407 PRO A 408 1 0.10 CISPEP 2 GLY A 407 PRO A 408 2 0.08 CISPEP 3 GLY A 407 PRO A 408 3 0.05 CISPEP 4 GLY A 407 PRO A 408 4 0.09 CISPEP 5 GLY A 407 PRO A 408 5 0.05 CISPEP 6 GLY A 407 PRO A 408 6 0.01 CISPEP 7 GLY A 407 PRO A 408 7 0.00 CISPEP 8 GLY A 407 PRO A 408 8 0.13 CISPEP 9 GLY A 407 PRO A 408 9 -0.01 CISPEP 10 GLY A 407 PRO A 408 10 0.10 CISPEP 11 GLY A 407 PRO A 408 11 0.11 CISPEP 12 GLY A 407 PRO A 408 12 0.02 CISPEP 13 GLY A 407 PRO A 408 13 0.11 CISPEP 14 GLY A 407 PRO A 408 14 0.03 CISPEP 15 GLY A 407 PRO A 408 15 0.00 CISPEP 16 GLY A 407 PRO A 408 16 0.05 CISPEP 17 GLY A 407 PRO A 408 17 0.02 CISPEP 18 GLY A 407 PRO A 408 18 0.05 CISPEP 19 GLY A 407 PRO A 408 19 0.07 CISPEP 20 GLY A 407 PRO A 408 20 0.11 SITE 1 AC1 4 CYS A 377 CYS A 380 HIS A 393 CYS A 397 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1