HEADER PLANT PROTEIN, SUGAR BINDING PROTEIN 08-JAN-07 2E79 OBSLTE 02-JUN-09 2E79 3A2E TITLE CRYSTAL STRUCTURE OF THE NOVEL ANTIFUNGAL PROTEIN FROM TITLE 2 GINKGO BILOBA SEEDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GINKBILOBIN-2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GINKGO BILOBA; SOURCE 3 ORGANISM_COMMON: GINKGO; SOURCE 4 ORGANISM_TAXID: 3311; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS DUF26 FOLD, C-X8-C-X2-C MOTIF, LECTIN, PLANT PROTEIN, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MIYAKAWA,Y.SAWANO,K.MIYAZONO,K.HATANO,M.TANOKURA REVDAT 3 02-JUN-09 2E79 1 OBSLTE REVDAT 2 24-FEB-09 2E79 1 VERSN REVDAT 1 15-JAN-08 2E79 0 JRNL AUTH T.MIYAKAWA,Y.SAWANO,K.MIYAZONO,K.HATANO,M.TANOKURA JRNL TITL STRUCTURAL INSIGHTS OF THE MANNAN RECOGNITION IN JRNL TITL 2 FUNGAL PATHOGEN BY GNK2 WITH THE CONSERVED MOTIF OF JRNL TITL 3 PLANT CRK JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.184 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3320 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4492 ; 1.729 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 7.205 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;36.502 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;17.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;26.246 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2568 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1668 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2318 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 376 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2194 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3420 ; 1.556 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 2.911 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1072 ; 4.389 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2E79 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB026313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-06; 01-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.6; 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A; AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000; 0.97909, 0.97934 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC REMARK 200 QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39529 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 61.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37500 REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% POLYACRYLIC ACID 5100, 100 MM REMARK 280 MES, 20MM MGCL2; 1.6M AMMONIUM SULFATE, 12% DIOXANE, 100 MM REMARK 280 MES, PH 6.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K. REMARK 280 1.6M AMMONIUM SULFATE, 12% DIOXANE, 100 MM MES, PH 6.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 71.58450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.58450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.58450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.58450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.58450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 71.58450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 71.58450 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 71.58450 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 71.58450 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 71.58450 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 71.58450 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 71.58450 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 71.58450 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 71.58450 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 71.58450 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 71.58450 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 71.58450 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 71.58450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 181 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 218 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 201 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG D 47 O HOH D 186 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 26 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG D 26 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 112.67 -162.19 REMARK 500 VAL D 6 -53.41 -123.20 REMARK 500 ASP D 42 114.20 -161.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 2E79 A 1 108 UNP A4ZDL6 A4ZDL6_GINBI 27 134 DBREF 2E79 B 1 108 UNP A4ZDL6 A4ZDL6_GINBI 27 134 DBREF 2E79 C 1 108 UNP A4ZDL6 A4ZDL6_GINBI 27 134 DBREF 2E79 D 1 108 UNP A4ZDL6 A4ZDL6_GINBI 27 134 SEQRES 1 A 108 ALA ASN THR ALA PHE VAL SER SER ALA CYS ASN THR GLN SEQRES 2 A 108 LYS ILE PRO SER GLY SER PRO PHE ASN ARG ASN LEU ARG SEQRES 3 A 108 ALA MET LEU ALA ASP LEU ARG GLN ASN THR ALA PHE SER SEQRES 4 A 108 GLY TYR ASP TYR LYS THR SER ARG ALA GLY SER GLY GLY SEQRES 5 A 108 ALA PRO THR ALA TYR GLY ARG ALA THR CYS LYS GLN SER SEQRES 6 A 108 ILE SER GLN SER ASP CYS THR ALA CYS LEU SER ASN LEU SEQRES 7 A 108 VAL ASN ARG ILE PHE SER ILE CYS ASN ASN ALA ILE GLY SEQRES 8 A 108 ALA ARG VAL GLN LEU VAL ASP CYS PHE ILE GLN TYR GLU SEQRES 9 A 108 GLN ARG SER PHE SEQRES 1 B 108 ALA ASN THR ALA PHE VAL SER SER ALA CYS ASN THR GLN SEQRES 2 B 108 LYS ILE PRO SER GLY SER PRO PHE ASN ARG ASN LEU ARG SEQRES 3 B 108 ALA MET LEU ALA ASP LEU ARG GLN ASN THR ALA PHE SER SEQRES 4 B 108 GLY TYR ASP TYR LYS THR SER ARG ALA GLY SER GLY GLY SEQRES 5 B 108 ALA PRO THR ALA TYR GLY ARG ALA THR CYS LYS GLN SER SEQRES 6 B 108 ILE SER GLN SER ASP CYS THR ALA CYS LEU SER ASN LEU SEQRES 7 B 108 VAL ASN ARG ILE PHE SER ILE CYS ASN ASN ALA ILE GLY SEQRES 8 B 108 ALA ARG VAL GLN LEU VAL ASP CYS PHE ILE GLN TYR GLU SEQRES 9 B 108 GLN ARG SER PHE SEQRES 1 C 108 ALA ASN THR ALA PHE VAL SER SER ALA CYS ASN THR GLN SEQRES 2 C 108 LYS ILE PRO SER GLY SER PRO PHE ASN ARG ASN LEU ARG SEQRES 3 C 108 ALA MET LEU ALA ASP LEU ARG GLN ASN THR ALA PHE SER SEQRES 4 C 108 GLY TYR ASP TYR LYS THR SER ARG ALA GLY SER GLY GLY SEQRES 5 C 108 ALA PRO THR ALA TYR GLY ARG ALA THR CYS LYS GLN SER SEQRES 6 C 108 ILE SER GLN SER ASP CYS THR ALA CYS LEU SER ASN LEU SEQRES 7 C 108 VAL ASN ARG ILE PHE SER ILE CYS ASN ASN ALA ILE GLY SEQRES 8 C 108 ALA ARG VAL GLN LEU VAL ASP CYS PHE ILE GLN TYR GLU SEQRES 9 C 108 GLN ARG SER PHE SEQRES 1 D 108 ALA ASN THR ALA PHE VAL SER SER ALA CYS ASN THR GLN SEQRES 2 D 108 LYS ILE PRO SER GLY SER PRO PHE ASN ARG ASN LEU ARG SEQRES 3 D 108 ALA MET LEU ALA ASP LEU ARG GLN ASN THR ALA PHE SER SEQRES 4 D 108 GLY TYR ASP TYR LYS THR SER ARG ALA GLY SER GLY GLY SEQRES 5 D 108 ALA PRO THR ALA TYR GLY ARG ALA THR CYS LYS GLN SER SEQRES 6 D 108 ILE SER GLN SER ASP CYS THR ALA CYS LEU SER ASN LEU SEQRES 7 D 108 VAL ASN ARG ILE PHE SER ILE CYS ASN ASN ALA ILE GLY SEQRES 8 D 108 ALA ARG VAL GLN LEU VAL ASP CYS PHE ILE GLN TYR GLU SEQRES 9 D 108 GLN ARG SER PHE FORMUL 5 HOH *482(H2 O) HELIX 1 1 PRO A 20 THR A 36 1 17 HELIX 2 2 ALA A 37 SER A 39 5 3 HELIX 3 3 SER A 67 ASN A 80 1 14 HELIX 4 4 ARG A 81 CYS A 86 1 6 HELIX 5 5 PRO B 20 THR B 36 1 17 HELIX 6 6 ALA B 37 SER B 39 5 3 HELIX 7 7 SER B 67 CYS B 86 1 20 HELIX 8 8 PRO C 20 THR C 36 1 17 HELIX 9 9 ALA C 37 SER C 39 5 3 HELIX 10 10 SER C 67 CYS C 86 1 20 HELIX 11 11 PRO D 20 THR D 36 1 17 HELIX 12 12 ALA D 37 SER D 39 5 3 HELIX 13 13 SER D 67 CYS D 86 1 20 SHEET 1 A 5 PHE A 5 CYS A 10 0 SHEET 2 A 5 ALA A 92 LEU A 96 -1 O ARG A 93 N ALA A 9 SHEET 3 A 5 CYS A 99 GLU A 104 -1 O CYS A 99 N LEU A 96 SHEET 4 A 5 ALA A 56 CYS A 62 -1 N ARG A 59 O GLN A 102 SHEET 5 A 5 ASP A 42 ARG A 47 -1 N THR A 45 O GLY A 58 SHEET 1 B 5 PHE B 5 CYS B 10 0 SHEET 2 B 5 ALA B 92 LEU B 96 -1 O GLN B 95 N SER B 7 SHEET 3 B 5 CYS B 99 GLU B 104 -1 O CYS B 99 N LEU B 96 SHEET 4 B 5 ALA B 56 CYS B 62 -1 N ARG B 59 O GLN B 102 SHEET 5 B 5 ASP B 42 ARG B 47 -1 N TYR B 43 O ALA B 60 SHEET 1 C 5 PHE C 5 CYS C 10 0 SHEET 2 C 5 ALA C 92 LEU C 96 -1 O GLN C 95 N SER C 7 SHEET 3 C 5 CYS C 99 GLU C 104 -1 O CYS C 99 N LEU C 96 SHEET 4 C 5 ALA C 56 CYS C 62 -1 N ARG C 59 O GLN C 102 SHEET 5 C 5 ASP C 42 ARG C 47 -1 N TYR C 43 O ALA C 60 SHEET 1 D 5 PHE D 5 CYS D 10 0 SHEET 2 D 5 ALA D 92 LEU D 96 -1 O GLN D 95 N SER D 7 SHEET 3 D 5 CYS D 99 GLU D 104 -1 O CYS D 99 N LEU D 96 SHEET 4 D 5 ALA D 56 CYS D 62 -1 N ARG D 59 O GLN D 102 SHEET 5 D 5 ASP D 42 ARG D 47 -1 N THR D 45 O GLY D 58 SSBOND 1 CYS A 10 CYS A 86 1555 1555 2.05 SSBOND 2 CYS A 62 CYS A 71 1555 1555 2.08 SSBOND 3 CYS A 74 CYS A 99 1555 1555 2.10 SSBOND 4 CYS B 10 CYS B 86 1555 1555 2.06 SSBOND 5 CYS B 62 CYS B 71 1555 1555 2.07 SSBOND 6 CYS B 74 CYS B 99 1555 1555 2.13 SSBOND 7 CYS C 10 CYS C 86 1555 1555 2.07 SSBOND 8 CYS C 62 CYS C 71 1555 1555 2.07 SSBOND 9 CYS C 74 CYS C 99 1555 1555 2.13 SSBOND 10 CYS D 10 CYS D 86 1555 1555 2.07 SSBOND 11 CYS D 62 CYS D 71 1555 1555 2.09 SSBOND 12 CYS D 74 CYS D 99 1555 1555 2.06 CRYST1 143.169 143.169 143.169 90.00 90.00 90.00 P 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006985 0.00000