data_2E7M # _entry.id 2E7M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2E7M pdb_00002e7m 10.2210/pdb2e7m/pdb RCSB RCSB026326 ? ? WWPDB D_1000026326 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002100311.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2E7M _pdbx_database_status.recvd_initial_deposition_date 2007-01-11 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Qin, X.R.' 1 'Nagashima, T.' 2 'Hayashi, F.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the PKD domain (329-428) from human KIAA0319' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qin, X.R.' 1 ? primary 'Nagashima, T.' 2 ? primary 'Hayashi, F.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein KIAA0319' _entity.formula_weight 12034.310 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PKD domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPRTVKELTVSAGDNLIITLPDNEVELKAFVAPAPPVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVG LYVFKVTVSSENAFGEGFVNVTVKPARSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPRTVKELTVSAGDNLIITLPDNEVELKAFVAPAPPVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVG LYVFKVTVSSENAFGEGFVNVTVKPARSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002100311.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 ARG n 1 10 THR n 1 11 VAL n 1 12 LYS n 1 13 GLU n 1 14 LEU n 1 15 THR n 1 16 VAL n 1 17 SER n 1 18 ALA n 1 19 GLY n 1 20 ASP n 1 21 ASN n 1 22 LEU n 1 23 ILE n 1 24 ILE n 1 25 THR n 1 26 LEU n 1 27 PRO n 1 28 ASP n 1 29 ASN n 1 30 GLU n 1 31 VAL n 1 32 GLU n 1 33 LEU n 1 34 LYS n 1 35 ALA n 1 36 PHE n 1 37 VAL n 1 38 ALA n 1 39 PRO n 1 40 ALA n 1 41 PRO n 1 42 PRO n 1 43 VAL n 1 44 GLU n 1 45 THR n 1 46 THR n 1 47 TYR n 1 48 ASN n 1 49 TYR n 1 50 GLU n 1 51 TRP n 1 52 ASN n 1 53 LEU n 1 54 ILE n 1 55 SER n 1 56 HIS n 1 57 PRO n 1 58 THR n 1 59 ASP n 1 60 TYR n 1 61 GLN n 1 62 GLY n 1 63 GLU n 1 64 ILE n 1 65 LYS n 1 66 GLN n 1 67 GLY n 1 68 HIS n 1 69 LYS n 1 70 GLN n 1 71 THR n 1 72 LEU n 1 73 ASN n 1 74 LEU n 1 75 SER n 1 76 GLN n 1 77 LEU n 1 78 SER n 1 79 VAL n 1 80 GLY n 1 81 LEU n 1 82 TYR n 1 83 VAL n 1 84 PHE n 1 85 LYS n 1 86 VAL n 1 87 THR n 1 88 VAL n 1 89 SER n 1 90 SER n 1 91 GLU n 1 92 ASN n 1 93 ALA n 1 94 PHE n 1 95 GLY n 1 96 GLU n 1 97 GLY n 1 98 PHE n 1 99 VAL n 1 100 ASN n 1 101 VAL n 1 102 THR n 1 103 VAL n 1 104 LYS n 1 105 PRO n 1 106 ALA n 1 107 ARG n 1 108 SER n 1 109 GLY n 1 110 PRO n 1 111 SER n 1 112 SER n 1 113 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene KIAA0319 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051121-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code K0319_HUMAN _struct_ref.pdbx_db_accession Q5VV43 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PRTVKELTVSAGDNLIITLPDNEVELKAFVAPAPPVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVGLYVFKVT VSSENAFGEGFVNVTVKPAR ; _struct_ref.pdbx_align_begin 329 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2E7M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5VV43 _struct_ref_seq.db_align_beg 329 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 428 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 107 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2E7M GLY A 1 ? UNP Q5VV43 ? ? 'cloning artifact' 1 1 1 2E7M SER A 2 ? UNP Q5VV43 ? ? 'cloning artifact' 2 2 1 2E7M SER A 3 ? UNP Q5VV43 ? ? 'cloning artifact' 3 3 1 2E7M GLY A 4 ? UNP Q5VV43 ? ? 'cloning artifact' 4 4 1 2E7M SER A 5 ? UNP Q5VV43 ? ? 'cloning artifact' 5 5 1 2E7M SER A 6 ? UNP Q5VV43 ? ? 'cloning artifact' 6 6 1 2E7M GLY A 7 ? UNP Q5VV43 ? ? 'cloning artifact' 7 7 1 2E7M SER A 108 ? UNP Q5VV43 ? ? 'cloning artifact' 108 8 1 2E7M GLY A 109 ? UNP Q5VV43 ? ? 'cloning artifact' 109 9 1 2E7M PRO A 110 ? UNP Q5VV43 ? ? 'cloning artifact' 110 10 1 2E7M SER A 111 ? UNP Q5VV43 ? ? 'cloning artifact' 111 11 1 2E7M SER A 112 ? UNP Q5VV43 ? ? 'cloning artifact' 112 12 1 2E7M GLY A 113 ? UNP Q5VV43 ? ? 'cloning artifact' 113 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.16mM 13C,15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_ensemble.entry_id 2E7M _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2E7M _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9816 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2E7M _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2E7M _struct.title 'Solution structure of the PKD domain (329-428) from human KIAA0319' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2E7M _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;PKD domain, Protein KIAA0319 precursor, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 1 -0.14 2 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 1 0.03 3 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 2 -0.06 4 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 2 -0.02 5 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 3 -0.20 6 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 3 -0.02 7 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 4 -0.11 8 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 4 0.06 9 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 5 -0.14 10 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 5 0.02 11 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 6 -0.07 12 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 6 0.00 13 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 7 -0.16 14 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 7 0.09 15 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 8 -0.13 16 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 8 0.08 17 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 9 -0.12 18 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 9 -0.01 19 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 10 -0.16 20 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 10 0.01 21 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 11 0.00 22 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 11 0.03 23 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 12 -0.13 24 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 12 -0.02 25 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 13 -0.10 26 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 13 0.01 27 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 14 -0.18 28 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 14 -0.01 29 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 15 -0.09 30 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 15 0.03 31 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 16 -0.12 32 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 16 -0.01 33 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 17 -0.15 34 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 17 -0.01 35 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 18 -0.16 36 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 18 0.05 37 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 19 -0.14 38 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 19 0.03 39 LEU 26 A . ? LEU 26 A PRO 27 A ? PRO 27 A 20 -0.14 40 ALA 38 A . ? ALA 38 A PRO 39 A ? PRO 39 A 20 -0.10 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 4 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 12 ? GLU A 13 ? LYS A 12 GLU A 13 A 2 ALA A 93 ? GLU A 96 ? ALA A 93 GLU A 96 A 3 THR A 87 ? SER A 90 ? THR A 87 SER A 90 B 1 THR A 15 ? SER A 17 ? THR A 15 SER A 17 B 2 PHE A 36 ? ALA A 38 ? PHE A 36 ALA A 38 C 1 LEU A 22 ? THR A 25 ? LEU A 22 THR A 25 C 2 VAL A 99 ? LYS A 104 ? VAL A 99 LYS A 104 C 3 GLY A 80 ? PHE A 84 ? GLY A 80 PHE A 84 C 4 LEU A 53 ? SER A 55 ? LEU A 53 SER A 55 D 1 VAL A 31 ? LYS A 34 ? VAL A 31 LYS A 34 D 2 THR A 71 ? LEU A 74 ? THR A 71 LEU A 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 12 ? N LYS A 12 O PHE A 94 ? O PHE A 94 A 2 3 O GLY A 95 ? O GLY A 95 N VAL A 88 ? N VAL A 88 B 1 2 N SER A 17 ? N SER A 17 O PHE A 36 ? O PHE A 36 C 1 2 N ILE A 24 ? N ILE A 24 O LYS A 104 ? O LYS A 104 C 2 3 O VAL A 101 ? O VAL A 101 N TYR A 82 ? N TYR A 82 C 3 4 O VAL A 83 ? O VAL A 83 N SER A 55 ? N SER A 55 D 1 2 N LEU A 33 ? N LEU A 33 O LEU A 72 ? O LEU A 72 # _database_PDB_matrix.entry_id 2E7M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2E7M _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 GLY 113 113 113 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 28 ? ? -48.20 105.53 2 1 PRO A 42 ? ? -69.79 -165.66 3 1 GLU A 44 ? ? -107.83 -69.37 4 1 LYS A 65 ? ? -99.32 35.56 5 1 GLN A 66 ? ? 39.48 26.89 6 1 SER A 108 ? ? -53.33 100.35 7 1 PRO A 110 ? ? -69.72 -179.59 8 1 SER A 111 ? ? -124.72 -59.58 9 2 SER A 5 ? ? -39.28 123.83 10 2 PRO A 8 ? ? -69.71 1.11 11 2 ASP A 28 ? ? -54.09 103.07 12 2 PRO A 42 ? ? -69.76 -173.94 13 2 GLU A 44 ? ? -106.66 -69.00 14 2 TYR A 47 ? ? -59.28 176.21 15 2 ALA A 106 ? ? -59.48 107.36 16 3 SER A 2 ? ? -130.72 -49.44 17 3 ASP A 28 ? ? -44.79 102.82 18 3 PRO A 42 ? ? -69.73 -167.64 19 3 GLN A 66 ? ? 45.27 25.12 20 3 GLN A 76 ? ? 35.13 37.70 21 3 VAL A 79 ? ? -65.93 99.70 22 3 SER A 108 ? ? -128.21 -50.89 23 4 ARG A 9 ? ? -133.33 -41.31 24 4 ASP A 20 ? ? -175.44 -179.61 25 4 LEU A 26 ? ? -47.69 155.63 26 4 ASP A 28 ? ? -50.95 96.17 27 4 PRO A 42 ? ? -69.77 -173.41 28 4 GLU A 44 ? ? -99.75 -73.87 29 4 GLN A 66 ? ? 45.03 25.06 30 5 PRO A 8 ? ? -69.75 2.88 31 5 ASP A 28 ? ? -48.39 96.13 32 5 PRO A 42 ? ? -69.75 -174.03 33 5 GLN A 66 ? ? 41.48 27.04 34 5 GLN A 76 ? ? 37.80 38.29 35 5 ALA A 106 ? ? -58.37 104.75 36 5 SER A 112 ? ? -98.91 42.23 37 6 PRO A 8 ? ? -69.82 80.63 38 6 ASP A 28 ? ? -45.64 103.96 39 6 PRO A 42 ? ? -69.78 -166.86 40 6 GLU A 44 ? ? -73.29 -71.83 41 6 ARG A 107 ? ? -85.30 34.97 42 7 ASP A 28 ? ? -41.91 101.66 43 7 PRO A 42 ? ? -69.78 -169.88 44 7 GLU A 44 ? ? -80.70 -74.88 45 7 TYR A 47 ? ? -53.50 179.38 46 7 GLN A 61 ? ? -132.13 -32.24 47 7 GLN A 66 ? ? 49.75 28.91 48 7 VAL A 79 ? ? -49.25 108.59 49 7 ALA A 106 ? ? -54.83 106.12 50 7 SER A 111 ? ? 36.71 41.28 51 8 PRO A 8 ? ? -69.77 0.93 52 8 THR A 10 ? ? -174.98 -174.98 53 8 LEU A 26 ? ? -47.19 155.58 54 8 ASP A 28 ? ? -43.26 103.76 55 8 PRO A 42 ? ? -69.77 -168.79 56 8 GLU A 44 ? ? -94.25 -72.78 57 8 GLN A 66 ? ? 43.24 26.44 58 8 ALA A 106 ? ? -58.08 108.34 59 9 ARG A 9 ? ? -57.83 104.62 60 9 LEU A 26 ? ? -49.33 156.81 61 9 ASP A 28 ? ? -45.55 100.39 62 9 PRO A 42 ? ? -69.79 -169.21 63 9 GLU A 44 ? ? -97.24 -67.56 64 9 TYR A 60 ? ? -38.96 147.12 65 9 GLN A 61 ? ? -132.57 -35.41 66 9 GLN A 66 ? ? 48.25 26.37 67 9 PRO A 110 ? ? -69.79 94.62 68 10 LEU A 26 ? ? -48.09 155.79 69 10 ASP A 28 ? ? -49.81 103.02 70 10 PRO A 42 ? ? -69.80 -163.86 71 10 GLN A 66 ? ? 42.22 26.39 72 10 ALA A 106 ? ? -57.23 108.22 73 10 SER A 111 ? ? -46.81 160.72 74 11 ARG A 9 ? ? -96.77 49.05 75 11 ASP A 28 ? ? -46.71 98.38 76 11 PRO A 42 ? ? -69.78 -169.18 77 11 GLU A 44 ? ? -92.17 -67.87 78 11 GLN A 61 ? ? -131.09 -40.08 79 11 GLN A 66 ? ? 42.63 25.05 80 11 GLN A 76 ? ? 36.05 30.40 81 11 VAL A 79 ? ? -68.21 98.14 82 11 ARG A 107 ? ? -77.00 49.90 83 12 PRO A 8 ? ? -69.80 94.45 84 12 ASP A 28 ? ? -41.39 102.35 85 12 PRO A 42 ? ? -69.75 -168.47 86 12 GLU A 44 ? ? -89.60 -70.63 87 12 VAL A 79 ? ? -58.01 107.93 88 12 ALA A 106 ? ? -58.34 100.46 89 13 ARG A 9 ? ? -50.45 90.20 90 13 ASP A 28 ? ? -47.71 98.45 91 13 PRO A 42 ? ? -69.72 -168.72 92 13 GLU A 44 ? ? -99.57 -73.98 93 13 TYR A 47 ? ? -49.91 178.56 94 13 GLN A 66 ? ? 48.39 25.48 95 13 ARG A 107 ? ? -81.55 41.24 96 13 SER A 111 ? ? -68.02 75.44 97 14 PRO A 8 ? ? -69.76 2.17 98 14 ARG A 9 ? ? -34.66 104.89 99 14 LEU A 26 ? ? -49.52 156.84 100 14 ASP A 28 ? ? -50.54 99.04 101 14 PRO A 42 ? ? -69.80 -168.99 102 14 GLN A 66 ? ? 44.87 25.04 103 14 GLN A 76 ? ? 37.86 35.77 104 15 SER A 6 ? ? 34.38 41.70 105 15 PRO A 8 ? ? -69.77 2.36 106 15 LEU A 26 ? ? -49.95 157.07 107 15 ASP A 28 ? ? -47.93 99.87 108 15 PRO A 42 ? ? -69.82 -170.96 109 15 GLN A 61 ? ? -132.63 -33.09 110 15 ALA A 106 ? ? -59.02 105.85 111 15 PRO A 110 ? ? -69.73 3.14 112 15 SER A 112 ? ? -131.52 -68.29 113 16 ASP A 28 ? ? -40.73 107.16 114 16 PRO A 42 ? ? -69.77 -171.61 115 16 GLN A 61 ? ? -133.46 -34.41 116 16 VAL A 79 ? ? -58.24 108.00 117 16 ALA A 106 ? ? -55.50 97.67 118 17 SER A 3 ? ? 36.89 42.10 119 17 LEU A 26 ? ? -47.27 155.48 120 17 ASP A 28 ? ? -41.23 100.02 121 17 PRO A 42 ? ? -69.77 -167.77 122 17 HIS A 56 ? ? -172.13 145.66 123 17 SER A 78 ? ? -84.03 -77.27 124 17 ARG A 107 ? ? -91.62 38.89 125 18 LEU A 26 ? ? -49.55 156.40 126 18 ASP A 28 ? ? -52.32 97.85 127 18 PRO A 42 ? ? -69.77 -164.86 128 18 HIS A 56 ? ? -174.84 144.40 129 18 GLN A 66 ? ? 39.73 29.52 130 19 PRO A 8 ? ? -69.80 2.60 131 19 LEU A 26 ? ? -49.42 155.43 132 19 ASP A 28 ? ? -42.60 105.54 133 19 PRO A 42 ? ? -69.78 -172.54 134 19 GLU A 44 ? ? -81.41 -72.70 135 19 LYS A 65 ? ? -88.04 32.37 136 19 GLN A 66 ? ? 45.83 25.68 137 19 ALA A 106 ? ? -58.12 107.30 138 19 ARG A 107 ? ? -68.50 95.02 139 20 ARG A 9 ? ? -37.20 121.88 140 20 LEU A 26 ? ? -49.43 155.58 141 20 ASP A 28 ? ? -46.98 98.41 142 20 PRO A 42 ? ? -69.80 -163.62 143 20 HIS A 56 ? ? -172.56 147.16 144 20 GLN A 61 ? ? -133.35 -33.17 145 20 ALA A 106 ? ? -44.42 98.88 #