HEADER HYDROLASE 18-JAN-07 2E85 TITLE CRYSTAL STRUCTURE OF THE HYDROGENASE 3 MATURATION PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROGENASE 3 MATURATION PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PCA24N KEYWDS HYDROGENASE, MATURATION, PROTEASE, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TANAKA,T.S.KUMAREVEL,A.SHINKAI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 10-NOV-21 2E85 1 REMARK SEQADV LINK REVDAT 4 06-OCT-09 2E85 1 JRNL REVDAT 3 08-SEP-09 2E85 1 JRNL REMARK REVDAT 2 24-FEB-09 2E85 1 VERSN REVDAT 1 22-JAN-08 2E85 0 JRNL AUTH T.KUMAREVEL,T.TANAKA,Y.BESSHO,A.SHINKAI,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF HYDROGENASE MATURATING ENDOPEPTIDASE JRNL TITL 2 HYCI FROM ESCHERICHIA COLI JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 389 310 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19720045 JRNL DOI 10.1016/J.BBRC.2009.08.135 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1580148.080 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 35885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1790 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5461 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 276 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.04 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.620 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.580 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.550 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.320 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.45 REMARK 3 BSOL : 57.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA_REP.PARAM REMARK 3 TOPOLOGY FILE 4 : ION.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921, 0.97955, 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36372 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 0.1M SODIUM HEPES, 28% PEG REMARK 280 400, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.71250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.49200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.71250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.49200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DEPOSITOR DID NOT CHARACTERIZED THE PROTEIN COMPLETELY REMARK 300 BY BIOCHEMICALLY. MAY BE A DIMER BASED ON THE CRYSTAL PACKING REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1066 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 154 REMARK 465 GLU A 155 REMARK 465 GLU A 156 REMARK 465 GLU B 155 REMARK 465 GLU B 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 0 CB REMARK 470 GLU B 154 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1015 O HOH A 1062 1.93 REMARK 500 O HOH A 1060 O HOH A 1075 1.99 REMARK 500 O HOH A 1063 O HOH B 1079 2.08 REMARK 500 OE2 GLU A 83 O HOH A 1064 2.09 REMARK 500 O HOH A 1004 O HOH A 1021 2.09 REMARK 500 OD1 ASP A 77 NE2 GLN A 150 2.09 REMARK 500 NE2 GLN A 100 O HOH A 1012 2.12 REMARK 500 OE2 GLU A 103 O HOH A 1011 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1007 O HOH B 1078 1554 1.64 REMARK 500 O HOH B 1075 O HOH B 1085 3556 1.93 REMARK 500 O HOH B 1027 O HOH B 1073 3556 2.04 REMARK 500 O HOH A 1064 O HOH B 1051 2555 2.05 REMARK 500 OD1 ASP A 99 O HOH A 1064 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 92 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 85.49 -156.05 REMARK 500 THR B 2 -65.95 -129.37 REMARK 500 ALA B 29 85.33 -154.47 REMARK 500 ASP B 116 -63.02 -104.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 106 GLU B 107 149.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 39 O REMARK 620 2 ALA A 42 O 93.2 REMARK 620 3 ASN A 45 OD1 171.0 85.2 REMARK 620 4 ASP A 46 OD1 103.7 119.0 84.7 REMARK 620 5 ASP A 46 OD2 82.0 75.6 106.1 50.5 REMARK 620 6 HOH A1010 O 89.1 154.9 88.6 84.5 129.4 REMARK 620 7 HOH A1018 O 83.1 79.4 87.9 159.3 150.0 76.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD1 REMARK 620 2 HOH A1063 O 84.4 REMARK 620 3 GLN B 100 OE1 85.8 101.6 REMARK 620 4 GLU B 103 OE1 89.3 165.3 91.2 REMARK 620 5 HOH B1017 O 170.2 92.2 85.8 95.9 REMARK 620 6 HOH B1051 O 103.0 91.1 165.3 77.4 86.2 REMARK 620 7 HOH B1079 O 111.1 52.5 60.4 142.0 60.0 124.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 O REMARK 620 2 ASP A 116 OD1 75.5 REMARK 620 3 HOH A1015 O 80.8 109.4 REMARK 620 4 HOH A1043 O 66.9 92.7 134.8 REMARK 620 5 HOH A1061 O 137.1 145.6 90.1 92.9 REMARK 620 6 HOH A1062 O 118.7 88.0 49.8 174.3 83.4 REMARK 620 7 HOH A1068 O 122.4 74.7 156.1 66.6 76.5 108.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 16 OD1 REMARK 620 2 ASP B 62 OD1 126.7 REMARK 620 3 ALA B 63 O 102.5 75.6 REMARK 620 4 HOH B1047 O 145.1 88.2 84.7 REMARK 620 5 HOH B1080 O 118.2 85.7 138.4 57.5 REMARK 620 6 HOH B1094 O 77.2 152.7 87.0 69.1 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 39 O REMARK 620 2 ALA B 42 O 97.6 REMARK 620 3 ASN B 45 OD1 171.9 85.4 REMARK 620 4 ASP B 46 OD1 99.4 121.7 85.3 REMARK 620 5 ASP B 46 OD2 84.4 76.7 103.6 50.4 REMARK 620 6 HOH B1008 O 82.5 79.5 90.6 157.8 151.0 REMARK 620 7 HOH B1010 O 84.8 157.8 89.6 79.2 125.4 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 140 OE1 REMARK 620 2 GLU B 140 OE2 51.6 REMARK 620 3 HOH B1033 O 128.9 77.4 REMARK 620 4 HOH B1035 O 77.3 127.4 152.0 REMARK 620 5 HOH B1072 O 80.1 79.5 93.6 80.4 REMARK 620 6 HOH B1097 O 143.7 141.1 77.5 74.6 73.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ECO002002687.1 RELATED DB: TARGETDB DBREF 2E85 A 1 156 UNP P0AEV9 HYCI_ECOLI 1 156 DBREF 2E85 B 1 156 UNP P0AEV9 HYCI_ECOLI 1 156 SEQADV 2E85 ALA A -2 UNP P0AEV9 EXPRESSION TAG SEQADV 2E85 SER A -1 UNP P0AEV9 EXPRESSION TAG SEQADV 2E85 ALA A 0 UNP P0AEV9 EXPRESSION TAG SEQADV 2E85 VAL A 1 UNP P0AEV9 MET 1 ENGINEERED MUTATION SEQADV 2E85 ALA B -2 UNP P0AEV9 EXPRESSION TAG SEQADV 2E85 SER B -1 UNP P0AEV9 EXPRESSION TAG SEQADV 2E85 ALA B 0 UNP P0AEV9 EXPRESSION TAG SEQADV 2E85 VAL B 1 UNP P0AEV9 MET 1 ENGINEERED MUTATION SEQRES 1 A 159 ALA SER ALA VAL THR ASP VAL LEU LEU CYS VAL GLY ASN SEQRES 2 A 159 SER MET MET GLY ASP ASP GLY ALA GLY PRO LEU LEU ALA SEQRES 3 A 159 GLU LYS CYS ALA ALA ALA PRO LYS GLY ASN TRP VAL VAL SEQRES 4 A 159 ILE ASP GLY GLY SER ALA PRO GLU ASN ASP ILE VAL ALA SEQRES 5 A 159 ILE ARG GLU LEU ARG PRO THR ARG LEU LEU ILE VAL ASP SEQRES 6 A 159 ALA THR ASP MET GLY LEU ASN PRO GLY GLU ILE ARG ILE SEQRES 7 A 159 ILE ASP PRO ASP ASP ILE ALA GLU MET PHE MET MET THR SEQRES 8 A 159 THR HIS ASN MET PRO LEU ASN TYR LEU ILE ASP GLN LEU SEQRES 9 A 159 LYS GLU ASP ILE GLY GLU VAL ILE PHE LEU GLY ILE GLN SEQRES 10 A 159 PRO ASP ILE VAL GLY PHE TYR TYR PRO MET THR GLN PRO SEQRES 11 A 159 ILE LYS ASP ALA VAL GLU THR VAL TYR GLN ARG LEU GLU SEQRES 12 A 159 GLY TRP GLU GLY ASN GLY GLY PHE ALA GLN LEU ALA VAL SEQRES 13 A 159 GLU GLU GLU SEQRES 1 B 159 ALA SER ALA VAL THR ASP VAL LEU LEU CYS VAL GLY ASN SEQRES 2 B 159 SER MET MET GLY ASP ASP GLY ALA GLY PRO LEU LEU ALA SEQRES 3 B 159 GLU LYS CYS ALA ALA ALA PRO LYS GLY ASN TRP VAL VAL SEQRES 4 B 159 ILE ASP GLY GLY SER ALA PRO GLU ASN ASP ILE VAL ALA SEQRES 5 B 159 ILE ARG GLU LEU ARG PRO THR ARG LEU LEU ILE VAL ASP SEQRES 6 B 159 ALA THR ASP MET GLY LEU ASN PRO GLY GLU ILE ARG ILE SEQRES 7 B 159 ILE ASP PRO ASP ASP ILE ALA GLU MET PHE MET MET THR SEQRES 8 B 159 THR HIS ASN MET PRO LEU ASN TYR LEU ILE ASP GLN LEU SEQRES 9 B 159 LYS GLU ASP ILE GLY GLU VAL ILE PHE LEU GLY ILE GLN SEQRES 10 B 159 PRO ASP ILE VAL GLY PHE TYR TYR PRO MET THR GLN PRO SEQRES 11 B 159 ILE LYS ASP ALA VAL GLU THR VAL TYR GLN ARG LEU GLU SEQRES 12 B 159 GLY TRP GLU GLY ASN GLY GLY PHE ALA GLN LEU ALA VAL SEQRES 13 B 159 GLU GLU GLU HET CA A1002 1 HET CA A1003 1 HET CA B1001 1 HET CA B1004 1 HET CA B1005 1 HET CA B1006 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 9 HOH *275(H2 O) HELIX 1 1 ASN A 10 ASP A 16 5 7 HELIX 2 2 GLY A 17 ALA A 29 1 13 HELIX 3 3 PRO A 43 ASN A 45 5 3 HELIX 4 4 ASP A 46 ARG A 54 1 9 HELIX 5 5 ASP A 77 MET A 84 1 8 HELIX 6 6 PRO A 93 GLY A 106 1 14 HELIX 7 7 THR A 125 GLN A 137 1 13 HELIX 8 8 MET B 13 ASP B 16 5 4 HELIX 9 9 GLY B 17 ALA B 29 1 13 HELIX 10 10 PRO B 43 ASN B 45 5 3 HELIX 11 11 ASP B 46 ARG B 54 1 9 HELIX 12 12 ASP B 77 MET B 84 1 8 HELIX 13 13 PRO B 93 GLY B 106 1 14 HELIX 14 14 THR B 125 LEU B 139 1 15 SHEET 1 A 5 VAL A 35 ASP A 38 0 SHEET 2 A 5 ASP A 3 VAL A 8 1 N CYS A 7 O ILE A 37 SHEET 3 A 5 ARG A 57 ALA A 63 1 O VAL A 61 N VAL A 8 SHEET 4 A 5 GLU A 107 ILE A 113 1 O LEU A 111 N ILE A 60 SHEET 5 A 5 ILE A 73 ILE A 75 -1 N ARG A 74 O GLY A 112 SHEET 1 B 5 VAL B 35 GLY B 40 0 SHEET 2 B 5 ASP B 3 VAL B 8 1 N LEU B 5 O ILE B 37 SHEET 3 B 5 ARG B 57 ALA B 63 1 O LEU B 59 N LEU B 6 SHEET 4 B 5 VAL B 108 ILE B 113 1 O LEU B 111 N ILE B 60 SHEET 5 B 5 ILE B 73 ILE B 75 -1 N ARG B 74 O GLY B 112 LINK O GLY A 39 CA CA A1002 1555 1555 2.29 LINK O ALA A 42 CA CA A1002 1555 1555 2.28 LINK OD1 ASN A 45 CA CA A1002 1555 1555 2.30 LINK OD1 ASP A 46 CA CA A1002 1555 1555 2.58 LINK OD2 ASP A 46 CA CA A1002 1555 1555 2.59 LINK OD1 ASP A 99 CA CA B1005 1555 1555 2.27 LINK O ASP A 116 CA CA A1003 1555 1555 2.52 LINK OD1 ASP A 116 CA CA A1003 1555 1555 2.25 LINK CA CA A1002 O HOH A1010 1555 1555 2.48 LINK CA CA A1002 O HOH A1018 1555 1555 2.50 LINK CA CA A1003 O HOH A1015 1555 1555 2.38 LINK CA CA A1003 O HOH A1043 1555 1555 2.80 LINK CA CA A1003 O HOH A1061 1555 1555 2.20 LINK CA CA A1003 O HOH A1062 1555 1555 2.19 LINK CA CA A1003 O HOH A1068 1555 1555 2.38 LINK O HOH A1063 CA CA B1005 1555 1555 2.38 LINK OD1 ASP B 16 CA CA B1004 1555 1555 2.34 LINK O GLY B 39 CA CA B1001 1555 1555 2.30 LINK O ALA B 42 CA CA B1001 1555 1555 2.26 LINK OD1 ASN B 45 CA CA B1001 1555 1555 2.25 LINK OD1 ASP B 46 CA CA B1001 1555 1555 2.62 LINK OD2 ASP B 46 CA CA B1001 1555 1555 2.54 LINK OD1 ASP B 62 CA CA B1004 1555 1555 2.31 LINK O ALA B 63 CA CA B1004 1555 1555 2.62 LINK OE1 GLN B 100 CA CA B1005 1555 1555 2.30 LINK OE1 GLU B 103 CA CA B1005 1555 1555 2.33 LINK OE1 GLU B 140 CA CA B1006 1555 1555 2.40 LINK OE2 GLU B 140 CA CA B1006 1555 1555 2.66 LINK CA CA B1001 O HOH B1008 1555 1555 2.47 LINK CA CA B1001 O HOH B1010 1555 1555 2.49 LINK CA CA B1004 O HOH B1047 1555 1555 2.41 LINK CA CA B1004 O HOH B1080 1555 1555 2.44 LINK CA CA B1004 O HOH B1094 1555 1555 2.25 LINK CA CA B1005 O HOH B1017 1555 1555 2.40 LINK CA CA B1005 O HOH B1051 1555 1555 2.46 LINK CA CA B1005 O HOH B1079 1555 1555 2.32 LINK CA CA B1006 O HOH B1033 1555 1555 2.43 LINK CA CA B1006 O HOH B1035 1555 1555 2.72 LINK CA CA B1006 O HOH B1072 1555 1555 2.34 LINK CA CA B1006 O HOH B1097 1555 1555 2.38 SITE 1 AC1 6 GLY A 39 ALA A 42 ASN A 45 ASP A 46 SITE 2 AC1 6 HOH A1010 HOH A1018 SITE 1 AC2 6 ASP A 116 HOH A1015 HOH A1043 HOH A1061 SITE 2 AC2 6 HOH A1062 HOH A1068 SITE 1 AC3 6 GLY B 39 ALA B 42 ASN B 45 ASP B 46 SITE 2 AC3 6 HOH B1008 HOH B1010 SITE 1 AC4 6 ASP B 16 ASP B 62 ALA B 63 HOH B1047 SITE 2 AC4 6 HOH B1080 HOH B1094 SITE 1 AC5 8 ASP A 99 HOH A1063 HOH A1064 GLN B 100 SITE 2 AC5 8 GLU B 103 HOH B1017 HOH B1051 HOH B1079 SITE 1 AC6 8 GLY A 32 GLU A 140 GLU B 140 HOH B1033 SITE 2 AC6 8 HOH B1035 HOH B1040 HOH B1072 HOH B1097 CRYST1 87.425 54.984 67.964 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014714 0.00000