HEADER TRANSFERASE 24-JAN-07 2E95
TITLE S. CEREVISIAE GERANYLGERANYL PYROPHOSPHATE SYNTHASE IN COMPLEX WITH
TITLE 2 MAGNESIUM AND BPH-675
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHETASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: GGPP SYNTHETASE, GGPPSASE, GERANYLGERANYL DIPHOSPHATE
COMPND 5 SYNTHASE, BET2 SUPPRESSOR PROTEIN 1;
COMPND 6 EC: 2.5.1.30;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 4932;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32/LIC
KEYWDS PRENYLTRANSFERASE, FARNESYL PYROPHOSPHATE, BISPHOSPHONATE,
KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.T.GUO,R.CAO,T.P.KO,W.Y.JENG,T.H.CHANG,C.K.-M.CHEN,P.H.LIANG,
AUTHOR 2 E.OLDFIELD,A.H.-J.WANG
REVDAT 4 25-OCT-23 2E95 1 REMARK SEQADV LINK
REVDAT 3 24-FEB-09 2E95 1 VERSN
REVDAT 2 19-JUN-07 2E95 1 JRNL
REVDAT 1 12-JUN-07 2E95 0
JRNL AUTH R.T.GUO,R.CAO,P.H.LIANG,T.P.KO,T.H.CHANG,M.P.HUDOCK,
JRNL AUTH 2 W.Y.JENG,C.K.-M.CHEN,Y.ZHANG,Y.SONG,C.J.KUO,F.YIN,
JRNL AUTH 3 E.OLDFIELD,A.H.-J.WANG
JRNL TITL BISPHOSPHONATES TARGET MULTIPLE SITES IN BOTH CIS- AND
JRNL TITL 2 TRANS-PRENYLTRANSFERASES
JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 10022 2007
JRNL REFN ISSN 0027-8424
JRNL PMID 17535895
JRNL DOI 10.1073/PNAS.0702254104
REMARK 2
REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.90
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.3
REMARK 3 NUMBER OF REFLECTIONS : 34526
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.185
REMARK 3 FREE R VALUE : 0.241
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : 1708
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : 0.2400
REMARK 3 BIN FREE R VALUE : 0.2900
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5120
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 51
REMARK 3 SOLVENT ATOMS : 337
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.84
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22
REMARK 3 ESD FROM SIGMAA (A) : 0.20
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.019
REMARK 3 BOND ANGLES (DEGREES) : 1.700
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : NULL
REMARK 3 KSOL : NULL
REMARK 3 BSOL : NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 2E95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-07.
REMARK 100 THE DEPOSITION ID IS D_1000026381.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : NULL
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : NSRRC
REMARK 200 BEAMLINE : BL13B1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36182
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 6.760
REMARK 200 R MERGE (I) : 0.08500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 6.70
REMARK 200 R MERGE FOR SHELL (I) : 0.42400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: PDB ENTRY 2DH4
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.27
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M CH3COONA, 16% PEG 4000, 6-10%
REMARK 280 GLYCEROL, 6-10% 1,2-PROPANEDIOL, PH 7.5, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 298.0K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.19500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.34750
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.13100
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.34750
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.19500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.13100
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8750 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 THR A 2
REMARK 465 LYS A 3
REMARK 465 SER A 193
REMARK 465 HIS A 194
REMARK 465 HIS A 195
REMARK 465 SER A 225
REMARK 465 SER A 226
REMARK 465 GLU A 227
REMARK 465 PRO A 314
REMARK 465 ASP A 315
REMARK 465 LEU A 316
REMARK 465 ALA A 317
REMARK 465 SER A 318
REMARK 465 HIS A 319
REMARK 465 SER A 320
REMARK 465 ASP A 321
REMARK 465 THR A 322
REMARK 465 ALA A 323
REMARK 465 THR A 324
REMARK 465 ASN A 325
REMARK 465 LEU A 326
REMARK 465 HIS A 327
REMARK 465 LEU A 340
REMARK 465 MET B 1
REMARK 465 THR B 2
REMARK 465 LYS B 3
REMARK 465 SER B 193
REMARK 465 HIS B 194
REMARK 465 HIS B 195
REMARK 465 GLY B 196
REMARK 465 SER B 226
REMARK 465 GLU B 227
REMARK 465 LYS B 228
REMARK 465 ASP B 315
REMARK 465 LEU B 316
REMARK 465 ALA B 317
REMARK 465 SER B 318
REMARK 465 HIS B 319
REMARK 465 SER B 320
REMARK 465 ASP B 321
REMARK 465 THR B 322
REMARK 465 ALA B 323
REMARK 465 THR B 324
REMARK 465 ASN B 325
REMARK 465 LEU B 326
REMARK 465 HIS B 327
REMARK 465 ASP B 328
REMARK 465 GLU B 329
REMARK 465 LEU B 330
REMARK 465 LEU B 331
REMARK 465 GLU B 339
REMARK 465 LEU B 340
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 214 OAE B75 A 1001 2.06
REMARK 500 ND1 HIS B 73 OAD B75 B 1002 2.09
REMARK 500 OD1 ASN A 4 O HOH A 717 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LEU A 57 CA - CB - CG ANGL. DEV. = 14.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 174 -70.32 -60.28
REMARK 500 GLU A 309 8.32 -68.90
REMARK 500 LEU A 337 -7.48 -56.61
REMARK 500 LEU B 37 12.31 -59.46
REMARK 500 PRO B 39 -179.40 -58.68
REMARK 500 LYS B 59 -46.52 -29.81
REMARK 500 PRO B 158 31.03 -90.76
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 B75 A 1001
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1301 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 80 OD1
REMARK 620 2 ASP A 84 OD2 91.9
REMARK 620 3 HOH A 665 O 93.1 169.9
REMARK 620 4 B75 A1001 OAH 94.4 87.3 101.0
REMARK 620 5 MG A1302 MG 80.4 47.1 142.5 43.7
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1302 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 80 OD2
REMARK 620 2 ASP A 84 OD2 89.7
REMARK 620 3 HOH A 416 O 176.4 87.2
REMARK 620 4 HOH A 469 O 87.5 102.4 94.9
REMARK 620 5 B75 A1001 OAF 93.2 164.8 89.4 92.6
REMARK 620 6 B75 A1001 OAH 89.7 86.9 88.4 170.2 78.2
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B1303 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 80 OD1
REMARK 620 2 ASP B 84 OD2 85.1
REMARK 620 3 HOH B 440 O 83.2 81.7
REMARK 620 4 B75 B1002 OAF 97.1 167.1 85.9
REMARK 620 5 B75 B1002 OAH 91.8 95.6 174.5 97.0
REMARK 620 6 MG B1304 MG 76.9 53.2 131.6 139.7 44.3
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B1304 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 80 OD2
REMARK 620 2 ASP B 80 OD1 45.7
REMARK 620 3 ASP B 84 OD2 92.2 59.0
REMARK 620 4 ASP B 84 OD1 100.9 94.9 45.9
REMARK 620 5 HOH B 477 O 171.7 142.6 94.2 79.8
REMARK 620 6 B75 B1002 OAH 94.0 64.1 87.6 131.1 91.6
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B75 A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B75 B 1002
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2DH4 RELATED DB: PDB
REMARK 900 NATIVE PROTEIN WITHOUT LIGAND
REMARK 900 RELATED ID: 2E8T RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM, FSPP AND IPP
REMARK 900 RELATED ID: 2E8U RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND IPP (IN SPACE GROUP,
REMARK 900 P21)
REMARK 900 RELATED ID: 2E8V RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH PRODUCT GGPP (IN SPACE GROUP, P21)
REMARK 900 RELATED ID: 2E8W RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND IPP
REMARK 900 RELATED ID: 2E8X RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND GPP
REMARK 900 RELATED ID: 2E90 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM, PYROPHOSPHATE AND FPP
REMARK 900 RELATED ID: 2E91 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND BPH-91
REMARK 900 RELATED ID: 2E92 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND BPH-261(MINODRONATE)
REMARK 900 RELATED ID: 2E93 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH BPH-629
REMARK 900 RELATED ID: 2E94 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND BPH-364
REMARK 900 RELATED ID: 2E96 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH BPH-715
REMARK 900 RELATED ID: 2E97 RELATED DB: PDB
REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM, IPP AND BPH-715
DBREF 2E95 A 6 340 UNP Q12051 GGPPS_YEAST 1 335
DBREF 2E95 B 6 340 UNP Q12051 GGPPS_YEAST 1 335
SEQADV 2E95 MET A 1 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 THR A 2 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 LYS A 3 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 ASN A 4 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 LYS A 5 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 MET B 1 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 THR B 2 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 LYS B 3 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 ASN B 4 UNP Q12051 CLONING ARTIFACT
SEQADV 2E95 LYS B 5 UNP Q12051 CLONING ARTIFACT
SEQRES 1 A 340 MET THR LYS ASN LYS MET GLU ALA LYS ILE ASP GLU LEU
SEQRES 2 A 340 ILE ASN ASN ASP PRO VAL TRP SER SER GLN ASN GLU SER
SEQRES 3 A 340 LEU ILE SER LYS PRO TYR ASN HIS ILE LEU LEU LYS PRO
SEQRES 4 A 340 GLY LYS ASN PHE ARG LEU ASN LEU ILE VAL GLN ILE ASN
SEQRES 5 A 340 ARG VAL MET ASN LEU PRO LYS ASP GLN LEU ALA ILE VAL
SEQRES 6 A 340 SER GLN ILE VAL GLU LEU LEU HIS ASN SER SER LEU LEU
SEQRES 7 A 340 ILE ASP ASP ILE GLU ASP ASN ALA PRO LEU ARG ARG GLY
SEQRES 8 A 340 GLN THR THR SER HIS LEU ILE PHE GLY VAL PRO SER THR
SEQRES 9 A 340 ILE ASN THR ALA ASN TYR MET TYR PHE ARG ALA MET GLN
SEQRES 10 A 340 LEU VAL SER GLN LEU THR THR LYS GLU PRO LEU TYR HIS
SEQRES 11 A 340 ASN LEU ILE THR ILE PHE ASN GLU GLU LEU ILE ASN LEU
SEQRES 12 A 340 HIS ARG GLY GLN GLY LEU ASP ILE TYR TRP ARG ASP PHE
SEQRES 13 A 340 LEU PRO GLU ILE ILE PRO THR GLN GLU MET TYR LEU ASN
SEQRES 14 A 340 MET VAL MET ASN LYS THR GLY GLY LEU PHE ARG LEU THR
SEQRES 15 A 340 LEU ARG LEU MET GLU ALA LEU SER PRO SER SER HIS HIS
SEQRES 16 A 340 GLY HIS SER LEU VAL PRO PHE ILE ASN LEU LEU GLY ILE
SEQRES 17 A 340 ILE TYR GLN ILE ARG ASP ASP TYR LEU ASN LEU LYS ASP
SEQRES 18 A 340 PHE GLN MET SER SER GLU LYS GLY PHE ALA GLU ASP ILE
SEQRES 19 A 340 THR GLU GLY LYS LEU SER PHE PRO ILE VAL HIS ALA LEU
SEQRES 20 A 340 ASN PHE THR LYS THR LYS GLY GLN THR GLU GLN HIS ASN
SEQRES 21 A 340 GLU ILE LEU ARG ILE LEU LEU LEU ARG THR SER ASP LYS
SEQRES 22 A 340 ASP ILE LYS LEU LYS LEU ILE GLN ILE LEU GLU PHE ASP
SEQRES 23 A 340 THR ASN SER LEU ALA TYR THR LYS ASN PHE ILE ASN GLN
SEQRES 24 A 340 LEU VAL ASN MET ILE LYS ASN ASP ASN GLU ASN LYS TYR
SEQRES 25 A 340 LEU PRO ASP LEU ALA SER HIS SER ASP THR ALA THR ASN
SEQRES 26 A 340 LEU HIS ASP GLU LEU LEU TYR ILE ILE ASP HIS LEU SER
SEQRES 27 A 340 GLU LEU
SEQRES 1 B 340 MET THR LYS ASN LYS MET GLU ALA LYS ILE ASP GLU LEU
SEQRES 2 B 340 ILE ASN ASN ASP PRO VAL TRP SER SER GLN ASN GLU SER
SEQRES 3 B 340 LEU ILE SER LYS PRO TYR ASN HIS ILE LEU LEU LYS PRO
SEQRES 4 B 340 GLY LYS ASN PHE ARG LEU ASN LEU ILE VAL GLN ILE ASN
SEQRES 5 B 340 ARG VAL MET ASN LEU PRO LYS ASP GLN LEU ALA ILE VAL
SEQRES 6 B 340 SER GLN ILE VAL GLU LEU LEU HIS ASN SER SER LEU LEU
SEQRES 7 B 340 ILE ASP ASP ILE GLU ASP ASN ALA PRO LEU ARG ARG GLY
SEQRES 8 B 340 GLN THR THR SER HIS LEU ILE PHE GLY VAL PRO SER THR
SEQRES 9 B 340 ILE ASN THR ALA ASN TYR MET TYR PHE ARG ALA MET GLN
SEQRES 10 B 340 LEU VAL SER GLN LEU THR THR LYS GLU PRO LEU TYR HIS
SEQRES 11 B 340 ASN LEU ILE THR ILE PHE ASN GLU GLU LEU ILE ASN LEU
SEQRES 12 B 340 HIS ARG GLY GLN GLY LEU ASP ILE TYR TRP ARG ASP PHE
SEQRES 13 B 340 LEU PRO GLU ILE ILE PRO THR GLN GLU MET TYR LEU ASN
SEQRES 14 B 340 MET VAL MET ASN LYS THR GLY GLY LEU PHE ARG LEU THR
SEQRES 15 B 340 LEU ARG LEU MET GLU ALA LEU SER PRO SER SER HIS HIS
SEQRES 16 B 340 GLY HIS SER LEU VAL PRO PHE ILE ASN LEU LEU GLY ILE
SEQRES 17 B 340 ILE TYR GLN ILE ARG ASP ASP TYR LEU ASN LEU LYS ASP
SEQRES 18 B 340 PHE GLN MET SER SER GLU LYS GLY PHE ALA GLU ASP ILE
SEQRES 19 B 340 THR GLU GLY LYS LEU SER PHE PRO ILE VAL HIS ALA LEU
SEQRES 20 B 340 ASN PHE THR LYS THR LYS GLY GLN THR GLU GLN HIS ASN
SEQRES 21 B 340 GLU ILE LEU ARG ILE LEU LEU LEU ARG THR SER ASP LYS
SEQRES 22 B 340 ASP ILE LYS LEU LYS LEU ILE GLN ILE LEU GLU PHE ASP
SEQRES 23 B 340 THR ASN SER LEU ALA TYR THR LYS ASN PHE ILE ASN GLN
SEQRES 24 B 340 LEU VAL ASN MET ILE LYS ASN ASP ASN GLU ASN LYS TYR
SEQRES 25 B 340 LEU PRO ASP LEU ALA SER HIS SER ASP THR ALA THR ASN
SEQRES 26 B 340 LEU HIS ASP GLU LEU LEU TYR ILE ILE ASP HIS LEU SER
SEQRES 27 B 340 GLU LEU
HET MG A1301 1
HET MG A1302 1
HET B75 A1001 10
HET MG B1303 1
HET MG B1304 1
HET B75 B1002 37
HETNAM MG MAGNESIUM ION
HETNAM B75 1-HYDROXY-2-[3'-(NAPHTHALENE-2-SULFONYLAMINO)-BIPHENYL-
HETNAM 2 B75 3-YL]ETHYLIDENE-1,1-BISPHOSPHONIC ACID
HETSYN B75 (1-HYDROXY-2-{3'-[(2-NAPHTHYLSULFONYL)AMINO]BIPHENYL-3-
HETSYN 2 B75 YL}ETHANE-1,1-DIYL)BIS(PHOSPHONIC ACID)
FORMUL 3 MG 4(MG 2+)
FORMUL 5 B75 2(C24 H23 N O9 P2 S)
FORMUL 9 HOH *337(H2 O)
HELIX 1 1 ASN A 4 ASN A 15 1 12
HELIX 2 2 SER A 21 SER A 29 1 9
HELIX 3 3 SER A 29 LEU A 37 1 9
HELIX 4 4 GLY A 40 ASN A 56 1 17
HELIX 5 5 PRO A 58 ASP A 84 1 27
HELIX 6 6 THR A 94 GLY A 100 1 7
HELIX 7 7 GLY A 100 SER A 120 1 21
HELIX 8 8 GLN A 121 THR A 123 5 3
HELIX 9 9 LYS A 125 PHE A 156 1 32
HELIX 10 10 THR A 163 SER A 190 1 28
HELIX 11 11 LEU A 199 MET A 224 1 26
HELIX 12 12 ALA A 231 GLY A 237 1 7
HELIX 13 13 SER A 240 LYS A 253 1 14
HELIX 14 14 GLN A 255 ARG A 269 1 15
HELIX 15 15 ASP A 272 ASP A 286 1 15
HELIX 16 16 ASN A 288 ASN A 306 1 19
HELIX 17 17 ASP A 328 HIS A 336 1 9
HELIX 18 18 ASN B 4 ASN B 15 1 12
HELIX 19 19 SER B 21 LEU B 37 1 17
HELIX 20 20 GLY B 40 ASN B 56 1 17
HELIX 21 21 PRO B 58 ASP B 84 1 27
HELIX 22 22 THR B 94 GLY B 100 1 7
HELIX 23 23 GLY B 100 SER B 120 1 21
HELIX 24 24 LYS B 125 LEU B 157 1 33
HELIX 25 25 THR B 163 SER B 190 1 28
HELIX 26 26 LEU B 199 MET B 224 1 26
HELIX 27 27 ALA B 231 GLY B 237 1 7
HELIX 28 28 SER B 240 LYS B 253 1 14
HELIX 29 29 GLN B 255 LEU B 268 1 14
HELIX 30 30 ASP B 272 ASP B 286 1 15
HELIX 31 31 ASN B 288 ASN B 306 1 19
SHEET 1 A 2 LEU A 88 ARG A 89 0
SHEET 2 A 2 GLN A 92 THR A 93 -1 O GLN A 92 N ARG A 89
SHEET 1 B 2 LEU B 88 ARG B 89 0
SHEET 2 B 2 GLN B 92 THR B 93 -1 O GLN B 92 N ARG B 89
LINK OD1 ASP A 80 MG MG A1301 1555 1555 2.22
LINK OD2 ASP A 80 MG MG A1302 1555 1555 2.04
LINK OD2 ASP A 84 MG MG A1301 1555 1555 2.11
LINK OD2 ASP A 84 MG MG A1302 1555 1555 2.25
LINK O HOH A 416 MG MG A1302 1555 1555 2.06
LINK O HOH A 469 MG MG A1302 1555 1555 2.08
LINK O HOH A 665 MG MG A1301 1555 1555 2.37
LINK OAH B75 A1001 MG MG A1301 1555 1555 2.24
LINK OAF B75 A1001 MG MG A1302 1555 1555 2.08
LINK OAH B75 A1001 MG MG A1302 1555 1555 2.12
LINK MG MG A1301 MG MG A1302 1555 1555 3.06
LINK OD1 ASP B 80 MG MG B1303 1555 1555 2.03
LINK OD2 ASP B 80 MG MG B1304 1555 1555 2.16
LINK OD1 ASP B 80 MG MG B1304 1555 1555 3.13
LINK OD2 ASP B 84 MG MG B1303 1555 1555 2.09
LINK OD2 ASP B 84 MG MG B1304 1555 1555 2.34
LINK OD1 ASP B 84 MG MG B1304 1555 1555 3.02
LINK O HOH B 440 MG MG B1303 1555 1555 2.43
LINK O HOH B 477 MG MG B1304 1555 1555 2.30
LINK OAF B75 B1002 MG MG B1303 1555 1555 1.83
LINK OAH B75 B1002 MG MG B1303 1555 1555 2.00
LINK OAH B75 B1002 MG MG B1304 1555 1555 2.02
LINK MG MG B1303 MG MG B1304 1555 1555 2.89
CISPEP 1 LEU A 157 PRO A 158 0 0.22
CISPEP 2 LEU B 157 PRO B 158 0 0.38
SITE 1 AC1 5 ASP A 80 ASP A 84 HOH A 665 B75 A1001
SITE 2 AC1 5 MG A1302
SITE 1 AC2 6 ASP A 80 ASP A 84 HOH A 416 HOH A 469
SITE 2 AC2 6 B75 A1001 MG A1301
SITE 1 AC3 5 ASP B 80 ASP B 84 HOH B 440 B75 B1002
SITE 2 AC3 5 MG B1304
SITE 1 AC4 5 ASP B 80 ASP B 84 HOH B 477 B75 B1002
SITE 2 AC4 5 MG B1303
SITE 1 AC5 16 ASP A 80 ASP A 84 ARG A 89 LYS A 174
SITE 2 AC5 16 GLN A 211 ASP A 214 LYS A 238 HOH A 416
SITE 3 AC5 16 HOH A 469 HOH A 603 HOH A 663 HOH A 664
SITE 4 AC5 16 HOH A 735 HOH A 736 MG A1301 MG A1302
SITE 1 AC6 21 ARG B 44 ILE B 48 VAL B 69 HIS B 73
SITE 2 AC6 21 ASP B 80 ASP B 84 ARG B 89 GLN B 147
SITE 3 AC6 21 LYS B 174 THR B 175 LEU B 178 PHE B 179
SITE 4 AC6 21 THR B 182 GLN B 211 ASP B 214 LYS B 238
SITE 5 AC6 21 HOH B 440 HOH B 477 HOH B 667 MG B1303
SITE 6 AC6 21 MG B1304
CRYST1 46.390 116.262 128.695 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021556 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008601 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007770 0.00000