HEADER TRANSLATION 25-JAN-07 2E9H TITLE SOLUTION STRUCTURE OF THE EIF-5_EIF-2B DOMAIN FROM HUMAN EUKARYOTIC TITLE 2 TRANSLATION INITIATION FACTOR 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EIF-5_EIF-2B DOMAIN; COMPND 5 SYNONYM: EIF-5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF5; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060411-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC BINDING, C4 TYPE ZINC FINGER, TRANSLATION INITIATION FACTOR, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E9H 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E9H 1 VERSN REVDAT 1 15-JAN-08 2E9H 0 JRNL AUTH T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE EIF-5_EIF-2B DOMAIN FROM HUMAN JRNL TITL 2 EUKARYOTIC TRANSLATION INITIATION FACTOR 5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E9H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026393. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.32MM EIF-5_EIF-2B DOMAIN U REMARK 210 -15N,13C; 20MM D-TRIS-HCL(PH 7.0) REMARK 210 ; 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060524, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9747, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 12 -34.32 -38.63 REMARK 500 1 ARG A 22 -70.00 -66.50 REMARK 500 1 ASN A 37 35.44 -85.15 REMARK 500 1 ILE A 43 80.30 -68.44 REMARK 500 1 ASN A 45 42.84 -88.66 REMARK 500 1 VAL A 104 -75.31 -67.07 REMARK 500 1 PRO A 107 6.02 -69.74 REMARK 500 1 GLU A 108 -50.42 -122.34 REMARK 500 1 PRO A 112 3.52 -69.78 REMARK 500 1 GLU A 113 41.96 -90.29 REMARK 500 1 ASP A 139 114.27 -39.70 REMARK 500 1 THR A 140 104.67 -47.91 REMARK 500 1 HIS A 141 -175.19 -55.74 REMARK 500 1 HIS A 142 -71.58 -88.02 REMARK 500 2 SER A 3 146.56 -172.02 REMARK 500 2 ARG A 14 -27.41 -38.70 REMARK 500 2 SER A 17 60.24 -119.46 REMARK 500 2 GLN A 19 40.51 -93.14 REMARK 500 2 TYR A 21 100.72 -38.65 REMARK 500 2 ARG A 22 -70.85 -54.35 REMARK 500 2 ASN A 37 35.87 -89.67 REMARK 500 2 ASN A 45 49.72 -79.63 REMARK 500 2 ASN A 54 25.27 47.89 REMARK 500 2 ASN A 84 151.20 -45.35 REMARK 500 2 LYS A 102 -60.19 -131.04 REMARK 500 2 PRO A 107 5.32 -69.72 REMARK 500 2 GLU A 110 35.36 32.86 REMARK 500 2 HIS A 141 163.66 -46.82 REMARK 500 2 LEU A 144 -65.27 -94.79 REMARK 500 2 CYS A 145 -34.52 -36.98 REMARK 500 3 SER A 5 46.66 -83.17 REMARK 500 3 VAL A 12 -38.32 -35.38 REMARK 500 3 ASP A 18 126.84 -34.28 REMARK 500 3 GLN A 19 30.54 -84.69 REMARK 500 3 ASN A 37 32.49 -84.00 REMARK 500 3 ASN A 45 46.49 -82.43 REMARK 500 3 ASN A 54 27.28 46.27 REMARK 500 3 ASP A 79 48.37 39.10 REMARK 500 3 LEU A 96 -35.72 -38.05 REMARK 500 3 LYS A 102 -55.70 -133.09 REMARK 500 3 VAL A 104 -55.10 -123.24 REMARK 500 3 PRO A 107 3.53 -69.77 REMARK 500 3 GLU A 110 39.25 74.36 REMARK 500 3 ASP A 139 113.99 -38.51 REMARK 500 3 THR A 140 94.78 -60.96 REMARK 500 3 HIS A 141 -178.54 -50.88 REMARK 500 3 ASN A 155 41.88 -86.82 REMARK 500 4 MET A 8 33.92 35.84 REMARK 500 4 TYR A 21 106.50 -39.00 REMARK 500 4 ASN A 37 35.50 -89.13 REMARK 500 REMARK 500 THIS ENTRY HAS 270 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 106 SG REMARK 620 2 CYS A 109 SG 103.8 REMARK 620 3 CYS A 129 SG 102.0 101.5 REMARK 620 4 CYS A 132 SG 118.1 122.9 105.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000469.1 RELATED DB: TARGETDB DBREF 2E9H A 8 157 UNP P55010 IF5_HUMAN 1 150 SEQADV 2E9H GLY A 1 UNP P55010 EXPRESSION TAG SEQADV 2E9H SER A 2 UNP P55010 EXPRESSION TAG SEQADV 2E9H SER A 3 UNP P55010 EXPRESSION TAG SEQADV 2E9H GLY A 4 UNP P55010 EXPRESSION TAG SEQADV 2E9H SER A 5 UNP P55010 EXPRESSION TAG SEQADV 2E9H SER A 6 UNP P55010 EXPRESSION TAG SEQADV 2E9H GLY A 7 UNP P55010 EXPRESSION TAG SEQRES 1 A 157 GLY SER SER GLY SER SER GLY MET SER VAL ASN VAL ASN SEQRES 2 A 157 ARG SER VAL SER ASP GLN PHE TYR ARG TYR LYS MET PRO SEQRES 3 A 157 ARG LEU ILE ALA LYS VAL GLU GLY LYS GLY ASN GLY ILE SEQRES 4 A 157 LYS THR VAL ILE VAL ASN MET VAL ASP VAL ALA LYS ALA SEQRES 5 A 157 LEU ASN ARG PRO PRO THR TYR PRO THR LYS TYR PHE GLY SEQRES 6 A 157 CYS GLU LEU GLY ALA GLN THR GLN PHE ASP VAL LYS ASN SEQRES 7 A 157 ASP ARG TYR ILE VAL ASN GLY SER HIS GLU ALA ASN LYS SEQRES 8 A 157 LEU GLN ASP MET LEU ASP GLY PHE ILE LYS LYS PHE VAL SEQRES 9 A 157 LEU CYS PRO GLU CYS GLU ASN PRO GLU THR ASP LEU HIS SEQRES 10 A 157 VAL ASN PRO LYS LYS GLN THR ILE GLY ASN SER CYS LYS SEQRES 11 A 157 ALA CYS GLY TYR ARG GLY MET LEU ASP THR HIS HIS LYS SEQRES 12 A 157 LEU CYS THR PHE ILE LEU LYS ASN PRO PRO GLU ASN SER SEQRES 13 A 157 ASP HET ZN A 301 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASN A 45 LEU A 53 1 9 HELIX 2 2 PRO A 57 GLY A 69 1 13 HELIX 3 3 GLU A 88 PHE A 103 1 16 HELIX 4 4 LYS A 143 ASN A 151 1 9 SHEET 1 A 2 SER A 9 ASN A 11 0 SHEET 2 A 2 LYS A 24 PRO A 26 -1 O MET A 25 N VAL A 10 SHEET 1 B 4 ALA A 30 VAL A 32 0 SHEET 2 B 4 LYS A 40 ILE A 43 -1 O VAL A 42 N LYS A 31 SHEET 3 B 4 ARG A 80 ASN A 84 -1 O VAL A 83 N THR A 41 SHEET 4 B 4 THR A 72 ASP A 75 -1 N GLN A 73 O ILE A 82 SHEET 1 C 3 ASP A 115 ASN A 119 0 SHEET 2 C 3 THR A 124 SER A 128 -1 O GLY A 126 N HIS A 117 SHEET 3 C 3 ARG A 135 MET A 137 -1 O GLY A 136 N ASN A 127 LINK SG CYS A 106 ZN ZN A 301 1555 1555 2.39 LINK SG CYS A 109 ZN ZN A 301 1555 1555 2.31 LINK SG CYS A 129 ZN ZN A 301 1555 1555 2.29 LINK SG CYS A 132 ZN ZN A 301 1555 1555 2.20 SITE 1 AC1 4 CYS A 106 CYS A 109 CYS A 129 CYS A 132 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1