HEADER SUGAR BINDING PROTEIN 31-JAN-07 2EAK TITLE CRYSTAL STRUCTURE OF HUMAN GALECTIN-9 N-TERMINAL CRD IN COMPLEX WITH TITLE 2 LACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-9; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: HOM-HD-21, ECALECTIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1 KEYWDS BETA SANDWICH, CARBOHYDRATE BINDING PROTEIN, GALECTIN, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.NAGAE,S.NAKAMURA-TSURUTA,N.NISHI,T.NAKAMURA,J.HIRABAYASHI, AUTHOR 2 S.WAKATSUKI,R.KATO REVDAT 7 25-DEC-24 2EAK 1 REMARK HETSYN LINK ATOM REVDAT 6 29-JUL-20 2EAK 1 COMPND REMARK HET HETNAM REVDAT 6 2 1 HETSYN FORMUL LINK SITE REVDAT 6 3 1 ATOM REVDAT 5 22-FEB-12 2EAK 1 JRNL HET HETNAM HETATM REVDAT 4 13-JUL-11 2EAK 1 VERSN REVDAT 3 13-OCT-09 2EAK 1 HETNAM REVDAT 2 24-FEB-09 2EAK 1 VERSN REVDAT 1 25-SEP-07 2EAK 0 JRNL AUTH M.NAGAE,N.NISHI,S.NAKAMURA-TSURUTA,J.HIRABAYASHI, JRNL AUTH 2 S.WAKATSUKI,R.KATO JRNL TITL STRUCTURAL ANALYSIS OF THE HUMAN GALECTIN-9 N-TERMINAL JRNL TITL 2 CARBOHYDRATE RECOGNITION DOMAIN REVEALS UNEXPECTED JRNL TITL 3 PROPERTIES THAT DIFFER FROM THE MOUSE ORTHOLOGUE. JRNL REF J.MOL.BIOL. V. 375 119 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18005988 JRNL DOI 10.1016/J.JMB.2007.09.060 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 132.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 33289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1841 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3507 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4761 ; 1.535 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 8.588 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;36.410 ;23.757 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;13.943 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2740 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1512 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2362 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 292 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.398 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2184 ; 1.006 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3427 ; 1.544 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1495 ; 2.111 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1334 ; 3.146 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 132.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31300 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM FLUORIDE, 20% PEG 3350, REMARK 280 PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.02600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.02600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.34050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.34350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.34050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.34350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.02600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.34050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.34350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.02600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.34050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.34350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PHE B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 PHE C 3 REMARK 465 SER C 4 REMARK 465 GLY C 5 REMARK 465 SER C 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 7 CG CD OE1 NE2 REMARK 470 HIS B 129 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 130 CG CD NE CZ NH1 NH2 REMARK 470 SER C 40 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 102 S4 DTV A 201 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 345 O HOH A 345 3655 1.50 REMARK 500 O HOH C 205 O HOH C 205 3655 1.72 REMARK 500 O HOH C 243 O HOH C 243 3655 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 101 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 7 83.76 -160.88 REMARK 500 SER A 40 -159.59 -66.88 REMARK 500 ASN A 79 48.97 36.17 REMARK 500 PRO A 92 40.43 -91.57 REMARK 500 SER B 41 93.53 51.04 REMARK 500 THR B 89 -155.17 -97.23 REMARK 500 PRO B 92 36.20 -92.22 REMARK 500 HIS B 129 63.21 -106.77 REMARK 500 SER C 41 -37.90 152.99 REMARK 500 MET C 91 117.08 -32.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 6 GLN A 7 121.69 REMARK 500 GLN A 7 ALA A 8 118.73 REMARK 500 SER A 41 GLY A 42 37.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EAG RELATED DB: PDB REMARK 900 RELATED ID: 2EAH RELATED DB: PDB REMARK 900 RELATED ID: 2EAI RELATED DB: PDB REMARK 900 RELATED ID: 2EAJ RELATED DB: PDB REMARK 900 RELATED ID: 2EAL RELATED DB: PDB DBREF 2EAK A 1 148 UNP O00182 LEG9_HUMAN 1 148 DBREF 2EAK B 1 148 UNP O00182 LEG9_HUMAN 1 148 DBREF 2EAK C 1 148 UNP O00182 LEG9_HUMAN 1 148 SEQRES 1 A 148 MET ALA PHE SER GLY SER GLN ALA PRO TYR LEU SER PRO SEQRES 2 A 148 ALA VAL PRO PHE SER GLY THR ILE GLN GLY GLY LEU GLN SEQRES 3 A 148 ASP GLY LEU GLN ILE THR VAL ASN GLY THR VAL LEU SER SEQRES 4 A 148 SER SER GLY THR ARG PHE ALA VAL ASN PHE GLN THR GLY SEQRES 5 A 148 PHE SER GLY ASN ASP ILE ALA PHE HIS PHE ASN PRO ARG SEQRES 6 A 148 PHE GLU ASP GLY GLY TYR VAL VAL CYS ASN THR ARG GLN SEQRES 7 A 148 ASN GLY SER TRP GLY PRO GLU GLU ARG LYS THR HIS MET SEQRES 8 A 148 PRO PHE GLN LYS GLY MET PRO PHE ASP LEU CYS PHE LEU SEQRES 9 A 148 VAL GLN SER SER ASP PHE LYS VAL MET VAL ASN GLY ILE SEQRES 10 A 148 LEU PHE VAL GLN TYR PHE HIS ARG VAL PRO PHE HIS ARG SEQRES 11 A 148 VAL ASP THR ILE SER VAL ASN GLY SER VAL GLN LEU SER SEQRES 12 A 148 TYR ILE SER PHE GLN SEQRES 1 B 148 MET ALA PHE SER GLY SER GLN ALA PRO TYR LEU SER PRO SEQRES 2 B 148 ALA VAL PRO PHE SER GLY THR ILE GLN GLY GLY LEU GLN SEQRES 3 B 148 ASP GLY LEU GLN ILE THR VAL ASN GLY THR VAL LEU SER SEQRES 4 B 148 SER SER GLY THR ARG PHE ALA VAL ASN PHE GLN THR GLY SEQRES 5 B 148 PHE SER GLY ASN ASP ILE ALA PHE HIS PHE ASN PRO ARG SEQRES 6 B 148 PHE GLU ASP GLY GLY TYR VAL VAL CYS ASN THR ARG GLN SEQRES 7 B 148 ASN GLY SER TRP GLY PRO GLU GLU ARG LYS THR HIS MET SEQRES 8 B 148 PRO PHE GLN LYS GLY MET PRO PHE ASP LEU CYS PHE LEU SEQRES 9 B 148 VAL GLN SER SER ASP PHE LYS VAL MET VAL ASN GLY ILE SEQRES 10 B 148 LEU PHE VAL GLN TYR PHE HIS ARG VAL PRO PHE HIS ARG SEQRES 11 B 148 VAL ASP THR ILE SER VAL ASN GLY SER VAL GLN LEU SER SEQRES 12 B 148 TYR ILE SER PHE GLN SEQRES 1 C 148 MET ALA PHE SER GLY SER GLN ALA PRO TYR LEU SER PRO SEQRES 2 C 148 ALA VAL PRO PHE SER GLY THR ILE GLN GLY GLY LEU GLN SEQRES 3 C 148 ASP GLY LEU GLN ILE THR VAL ASN GLY THR VAL LEU SER SEQRES 4 C 148 SER SER GLY THR ARG PHE ALA VAL ASN PHE GLN THR GLY SEQRES 5 C 148 PHE SER GLY ASN ASP ILE ALA PHE HIS PHE ASN PRO ARG SEQRES 6 C 148 PHE GLU ASP GLY GLY TYR VAL VAL CYS ASN THR ARG GLN SEQRES 7 C 148 ASN GLY SER TRP GLY PRO GLU GLU ARG LYS THR HIS MET SEQRES 8 C 148 PRO PHE GLN LYS GLY MET PRO PHE ASP LEU CYS PHE LEU SEQRES 9 C 148 VAL GLN SER SER ASP PHE LYS VAL MET VAL ASN GLY ILE SEQRES 10 C 148 LEU PHE VAL GLN TYR PHE HIS ARG VAL PRO PHE HIS ARG SEQRES 11 C 148 VAL ASP THR ILE SER VAL ASN GLY SER VAL GLN LEU SER SEQRES 12 C 148 TYR ILE SER PHE GLN HET GLC D 1 12 HET GAL D 2 11 HET GLC E 1 12 HET GAL E 2 11 HET DTV A 201 8 HET GOL B 201 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM DTV (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GLC 2(C6 H12 O6) FORMUL 4 GAL 2(C6 H12 O6) FORMUL 6 DTV C4 H10 O2 S2 FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *275(H2 O) HELIX 1 1 PRO A 127 VAL A 131 5 5 HELIX 2 2 PRO C 127 VAL C 131 5 5 SHEET 1 A 6 TYR A 10 LEU A 11 0 SHEET 2 A 6 VAL A 140 PHE A 147 -1 O ILE A 145 N TYR A 10 SHEET 3 A 6 GLN A 30 VAL A 37 -1 N ASN A 34 O TYR A 144 SHEET 4 A 6 PRO A 98 VAL A 105 -1 O LEU A 101 N VAL A 33 SHEET 5 A 6 ASP A 109 VAL A 114 -1 O MET A 113 N CYS A 102 SHEET 6 A 6 ILE A 117 PHE A 123 -1 O PHE A 119 N VAL A 112 SHEET 1 B 6 PHE A 17 THR A 20 0 SHEET 2 B 6 THR A 133 GLY A 138 -1 O ILE A 134 N GLY A 19 SHEET 3 B 6 PHE A 45 GLN A 50 -1 N ASN A 48 O SER A 135 SHEET 4 B 6 ILE A 58 ARG A 65 -1 O PHE A 60 N PHE A 49 SHEET 5 B 6 TYR A 71 GLN A 78 -1 O TYR A 71 N ARG A 65 SHEET 6 B 6 SER A 81 TRP A 82 -1 O SER A 81 N GLN A 78 SHEET 1 C 6 PHE A 17 THR A 20 0 SHEET 2 C 6 THR A 133 GLY A 138 -1 O ILE A 134 N GLY A 19 SHEET 3 C 6 PHE A 45 GLN A 50 -1 N ASN A 48 O SER A 135 SHEET 4 C 6 ILE A 58 ARG A 65 -1 O PHE A 60 N PHE A 49 SHEET 5 C 6 TYR A 71 GLN A 78 -1 O TYR A 71 N ARG A 65 SHEET 6 C 6 GLU A 86 LYS A 88 -1 O GLU A 86 N CYS A 74 SHEET 1 D 6 TYR B 10 LEU B 11 0 SHEET 2 D 6 VAL B 140 GLN B 148 -1 O ILE B 145 N TYR B 10 SHEET 3 D 6 GLN B 30 VAL B 37 -1 N THR B 32 O SER B 146 SHEET 4 D 6 PRO B 98 VAL B 105 -1 O LEU B 101 N VAL B 33 SHEET 5 D 6 ASP B 109 VAL B 114 -1 O LYS B 111 N LEU B 104 SHEET 6 D 6 ILE B 117 PHE B 123 -1 O PHE B 119 N VAL B 112 SHEET 1 E 6 PHE B 17 THR B 20 0 SHEET 2 E 6 THR B 133 GLY B 138 -1 O VAL B 136 N PHE B 17 SHEET 3 E 6 PHE B 45 GLN B 50 -1 N ASN B 48 O SER B 135 SHEET 4 E 6 ILE B 58 ARG B 65 -1 O PHE B 60 N PHE B 49 SHEET 5 E 6 TYR B 71 GLN B 78 -1 O ARG B 77 N ILE B 58 SHEET 6 E 6 SER B 81 TRP B 82 -1 O SER B 81 N GLN B 78 SHEET 1 F 6 PHE B 17 THR B 20 0 SHEET 2 F 6 THR B 133 GLY B 138 -1 O VAL B 136 N PHE B 17 SHEET 3 F 6 PHE B 45 GLN B 50 -1 N ASN B 48 O SER B 135 SHEET 4 F 6 ILE B 58 ARG B 65 -1 O PHE B 60 N PHE B 49 SHEET 5 F 6 TYR B 71 GLN B 78 -1 O ARG B 77 N ILE B 58 SHEET 6 F 6 GLU B 86 LYS B 88 -1 O GLU B 86 N CYS B 74 SHEET 1 G 6 TYR C 10 LEU C 11 0 SHEET 2 G 6 VAL C 140 PHE C 147 -1 O ILE C 145 N TYR C 10 SHEET 3 G 6 GLN C 30 VAL C 37 -1 N THR C 36 O GLN C 141 SHEET 4 G 6 PRO C 98 VAL C 105 -1 O LEU C 101 N VAL C 33 SHEET 5 G 6 ASP C 109 VAL C 114 -1 O MET C 113 N CYS C 102 SHEET 6 G 6 ILE C 117 PHE C 123 -1 O PHE C 119 N VAL C 112 SHEET 1 H 6 PHE C 17 THR C 20 0 SHEET 2 H 6 THR C 133 GLY C 138 -1 O ILE C 134 N GLY C 19 SHEET 3 H 6 PHE C 45 GLN C 50 -1 N ASN C 48 O SER C 135 SHEET 4 H 6 ILE C 58 ARG C 65 -1 O PHE C 62 N VAL C 47 SHEET 5 H 6 TYR C 71 GLN C 78 -1 O TYR C 71 N ARG C 65 SHEET 6 H 6 SER C 81 TRP C 82 -1 O SER C 81 N GLN C 78 SHEET 1 I 6 PHE C 17 THR C 20 0 SHEET 2 I 6 THR C 133 GLY C 138 -1 O ILE C 134 N GLY C 19 SHEET 3 I 6 PHE C 45 GLN C 50 -1 N ASN C 48 O SER C 135 SHEET 4 I 6 ILE C 58 ARG C 65 -1 O PHE C 62 N VAL C 47 SHEET 5 I 6 TYR C 71 GLN C 78 -1 O TYR C 71 N ARG C 65 SHEET 6 I 6 GLU C 86 LYS C 88 -1 O GLU C 86 N CYS C 74 LINK O4 GLC D 1 C1 GAL D 2 1555 1555 1.43 LINK O4 GLC E 1 C1 GAL E 2 1555 1555 1.40 CISPEP 1 VAL A 15 PRO A 16 0 7.63 CISPEP 2 VAL B 15 PRO B 16 0 -0.39 CISPEP 3 SER B 39 SER B 40 0 -1.54 CISPEP 4 SER B 40 SER B 41 0 9.07 CISPEP 5 PHE B 128 HIS B 129 0 7.61 CISPEP 6 VAL C 15 PRO C 16 0 0.85 CRYST1 70.681 118.687 132.052 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007573 0.00000