HEADER DNA BINDING PROTEIN 08-FEB-07 2EBI TITLE ARABIDOPSIS GT-1 DNA-BINDING DOMAIN WITH T133D PHOSPHOMIMETIC MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA BINDING PROTEIN GT-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 81-166; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN AT1G13450; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: T6J4.18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS DNA-BINDING DOMAIN, PHOSPHORYLATION, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,K.NOTO,E.NIYADA,Y.IKEDA,Y.YAMAMOTO,S.UESUGI,J.MURATA, AUTHOR 2 K.HIRATSUKA,M.KATAHIRA REVDAT 6 22-MAY-24 2EBI 1 REMARK REVDAT 5 20-OCT-21 2EBI 1 REMARK SEQADV REVDAT 4 29-SEP-10 2EBI 1 JRNL REVDAT 3 25-AUG-10 2EBI 1 JRNL REVDAT 2 24-FEB-09 2EBI 1 VERSN REVDAT 1 19-FEB-08 2EBI 0 JRNL AUTH T.NAGATA,E.NIYADA,N.FUJIMOTO,Y.NAGASAKI,K.NOTO,Y.MIYANOIRI, JRNL AUTH 2 J.MURATA,K.HIRATSUKA,M.KATAHIRA JRNL TITL SOLUTION STRUCTURES OF THE TRIHELIX DNA-BINDING DOMAINS OF JRNL TITL 2 THE WILD-TYPE AND A PHOSPHOMIMETIC MUTANT OF ARABIDOPSIS JRNL TITL 3 GT-1: MECHANISM FOR AN INCREASE IN DNA-BINDING AFFINITY JRNL TITL 4 THROUGH PHOSPHORYLATION. JRNL REF PROTEINS V. 78 3033 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20717979 JRNL DOI 10.1002/PROT.22827 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EBI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000026466. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM PROTEIN U-15N,13C, 20MM REMARK 210 PHOSPHATE BUFFER NA, 100MM NACL, REMARK 210 10MM DTT, 1MM NAN3, 0.1% DSS, 95% REMARK 210 H2O; 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.0.4, KUJIRA REMARK 210 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 84 -72.56 -52.94 REMARK 500 1 ARG A 100 -31.62 -38.43 REMARK 500 1 PHE A 106 -37.43 -37.15 REMARK 500 1 ASN A 112 36.71 -94.16 REMARK 500 1 LYS A 147 138.59 -37.30 REMARK 500 1 ALA A 149 55.53 -114.07 REMARK 500 2 LYS A 122 -70.44 -65.10 REMARK 500 2 GLU A 125 -35.59 -34.78 REMARK 500 2 LYS A 150 46.65 35.78 REMARK 500 2 LYS A 165 40.07 -99.58 REMARK 500 3 ARG A 100 -34.74 -39.73 REMARK 500 3 THR A 108 47.34 -96.94 REMARK 500 3 SER A 109 137.22 -172.76 REMARK 500 3 ASN A 112 46.65 -86.01 REMARK 500 3 SER A 158 128.51 -173.64 REMARK 500 4 GLU A 85 36.78 -88.38 REMARK 500 4 THR A 92 -71.62 -49.76 REMARK 500 4 SER A 109 111.17 -173.34 REMARK 500 4 ASN A 112 32.77 -86.67 REMARK 500 4 LEU A 115 -70.94 -55.46 REMARK 500 4 LYS A 150 154.21 -47.27 REMARK 500 4 HIS A 151 44.35 -104.70 REMARK 500 4 HIS A 152 42.83 -94.87 REMARK 500 4 ARG A 154 139.88 -170.47 REMARK 500 4 TYR A 163 163.39 -48.35 REMARK 500 4 LYS A 165 162.07 -47.32 REMARK 500 5 LYS A 82 167.41 -47.71 REMARK 500 5 ARG A 100 -33.82 -39.01 REMARK 500 5 PHE A 106 -26.62 -39.30 REMARK 500 5 THR A 108 48.32 -80.78 REMARK 500 5 SER A 109 126.15 -172.32 REMARK 500 5 ASN A 112 41.49 -88.33 REMARK 500 5 HIS A 151 114.96 -38.17 REMARK 500 6 LYS A 82 99.56 -59.59 REMARK 500 6 ALA A 84 94.63 -69.34 REMARK 500 6 TRP A 116 -25.69 -39.76 REMARK 500 6 ALA A 149 43.81 -95.41 REMARK 500 6 ASP A 153 92.50 -66.08 REMARK 500 7 SER A 109 109.41 -170.39 REMARK 500 7 ASN A 112 42.64 -91.84 REMARK 500 7 ALA A 149 101.53 -45.95 REMARK 500 7 HIS A 151 94.49 -62.13 REMARK 500 7 ASP A 153 -52.72 -123.56 REMARK 500 8 ARG A 100 -35.81 -39.70 REMARK 500 8 SER A 109 112.62 -165.07 REMARK 500 8 LEU A 115 -71.69 -50.44 REMARK 500 8 SER A 120 -32.05 -38.52 REMARK 500 8 ALA A 149 121.92 -34.30 REMARK 500 8 ASN A 156 172.06 -46.32 REMARK 500 9 ASP A 90 -71.75 -61.84 REMARK 500 REMARK 500 THIS ENTRY HAS 114 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JMW RELATED DB: PDB REMARK 900 STRUCTURE OF WILD TYPE ARABIDOPSIS GT-1 DNA-BINDING DOMAIN DBREF 2EBI A 81 166 UNP Q9FX53 Q9FX53_ARATH 81 166 SEQADV 2EBI ASP A 133 UNP Q9FX53 THR 133 ENGINEERED MUTATION SEQRES 1 A 86 LYS LYS ARG ALA GLU THR TRP VAL GLN ASP GLU THR ARG SEQRES 2 A 86 SER LEU ILE MET PHE ARG ARG GLY MET ASP GLY LEU PHE SEQRES 3 A 86 ASN THR SER LYS SER ASN LYS HIS LEU TRP GLU GLN ILE SEQRES 4 A 86 SER SER LYS MET ARG GLU LYS GLY PHE ASP ARG SER PRO SEQRES 5 A 86 ASP MET CYS THR ASP LYS TRP ARG ASN LEU LEU LYS GLU SEQRES 6 A 86 PHE LYS LYS ALA LYS HIS HIS ASP ARG GLY ASN GLY SER SEQRES 7 A 86 ALA LYS MET SER TYR TYR LYS GLU HELIX 1 1 VAL A 88 SER A 109 1 22 HELIX 2 2 ASN A 112 PHE A 128 1 17 HELIX 3 3 SER A 131 LYS A 147 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1