HEADER TRANSCRIPTION 09-FEB-07 2EBT TITLE SOLUTION STRUCTURE OF THREE TANDEM REPEATS OF ZF-C2H2 DOMAINS FROM TITLE 2 HUMAN KRUPPEL-LIKE FACTOR 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KRUEPPEL-LIKE FACTOR 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2; COMPND 5 SYNONYM: INTESTINAL-ENRICHED KRUEPPEL-LIKE FACTOR, COLON KRUEPPEL- COMPND 6 LIKE FACTOR, TRANSCRIPTION FACTOR BTEB2, BASIC TRANSCRIPTION ELEMENT- COMPND 7 BINDING PROTEIN 2, BTE-BINDING PROTEIN 2, GC BOX-BINDING PROTEIN 2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060116-02; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS C2H2-TYPE ZINC-FINGER, METAL BIND, TRANSCRIPTION FACTOR, KRUPPEL-LIKE KEYWDS 2 FACTOR, GC-BOX PROMOTER ELEMENTS, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EBT 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2EBT 1 VERSN REVDAT 1 19-FEB-08 2EBT 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THREE TANDEM REPEATS OF ZF-C2H2 JRNL TITL 2 DOMAINS FROM HUMAN KRUPPEL-LIKE FACTOR 5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EBT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026475. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.59MM UNIFORMLY 13C/15N REMARK 210 -LABELLED PROTEIN, 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3, REMARK 210 50UM ZNCL2, 1MM IDA, 10% D2O, 90% REMARK 210 H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 362 129.28 -174.07 REMARK 500 1 PRO A 365 -170.23 -69.76 REMARK 500 1 LYS A 369 159.94 -39.50 REMARK 500 1 ASP A 376 41.36 -81.85 REMARK 500 1 THR A 385 35.12 -85.61 REMARK 500 1 GLU A 400 135.39 -173.46 REMARK 500 1 THR A 406 48.33 -80.31 REMARK 500 1 PRO A 432 2.79 -69.71 REMARK 500 2 SER A 362 147.28 -175.03 REMARK 500 2 PRO A 365 -175.98 -69.75 REMARK 500 2 ARG A 370 136.58 -173.53 REMARK 500 2 ASP A 376 40.64 -87.43 REMARK 500 2 THR A 406 43.34 -81.81 REMARK 500 2 PRO A 432 2.61 -69.79 REMARK 500 3 CYS A 375 128.73 -35.94 REMARK 500 3 ASP A 376 36.23 -84.85 REMARK 500 3 CYS A 405 109.76 -54.94 REMARK 500 3 THR A 406 47.93 -76.21 REMARK 500 3 THR A 428 30.62 -84.47 REMARK 500 3 CYS A 435 174.60 -56.26 REMARK 500 3 ASN A 439 43.63 71.16 REMARK 500 4 ASP A 376 41.15 -81.67 REMARK 500 4 THR A 398 129.39 -38.81 REMARK 500 4 THR A 406 45.78 -82.74 REMARK 500 4 GLN A 456 163.00 -44.32 REMARK 500 5 PRO A 365 -175.64 -69.77 REMARK 500 5 LYS A 369 115.69 -163.11 REMARK 500 5 ASP A 376 39.25 -82.99 REMARK 500 5 THR A 385 37.28 -84.69 REMARK 500 5 THR A 398 120.97 -37.57 REMARK 500 5 GLU A 400 95.25 -45.61 REMARK 500 5 THR A 406 46.08 -83.20 REMARK 500 5 THR A 428 30.96 -99.42 REMARK 500 6 ARG A 370 144.13 -170.82 REMARK 500 6 CYS A 375 133.95 -36.52 REMARK 500 6 THR A 406 43.85 -82.81 REMARK 500 7 SER A 359 142.73 -173.17 REMARK 500 7 ASP A 366 108.20 -172.48 REMARK 500 7 ASP A 376 37.70 -84.27 REMARK 500 7 THR A 406 43.30 -79.72 REMARK 500 8 PRO A 365 -175.78 -69.76 REMARK 500 8 ASP A 376 32.88 -84.57 REMARK 500 8 CYS A 380 139.45 -37.79 REMARK 500 8 THR A 385 -19.83 -49.66 REMARK 500 8 ARG A 395 -37.32 -34.50 REMARK 500 8 LYS A 401 70.47 -111.49 REMARK 500 8 THR A 406 42.26 -82.30 REMARK 500 9 PRO A 365 -176.22 -69.76 REMARK 500 9 ASP A 376 41.47 -81.80 REMARK 500 9 LYS A 401 76.18 -107.31 REMARK 500 REMARK 500 THIS ENTRY HAS 132 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 100 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 375 SG REMARK 620 2 CYS A 380 SG 107.0 REMARK 620 3 HIS A 393 NE2 109.7 111.5 REMARK 620 4 HIS A 397 NE2 111.8 110.8 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 405 SG REMARK 620 2 CYS A 410 SG 106.0 REMARK 620 3 HIS A 423 NE2 112.7 113.2 REMARK 620 4 HIS A 427 NE2 110.1 113.2 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 CYS A 438 SG 104.6 REMARK 620 3 HIS A 451 NE2 113.5 110.7 REMARK 620 4 HIS A 455 NE2 110.8 114.4 103.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006302.1 RELATED DB: TARGETDB DBREF 2EBT A 365 457 UNP Q13887 KLF5_HUMAN 365 457 SEQADV 2EBT GLY A 358 UNP Q13887 EXPRESSION TAG SEQADV 2EBT SER A 359 UNP Q13887 EXPRESSION TAG SEQADV 2EBT SER A 360 UNP Q13887 EXPRESSION TAG SEQADV 2EBT GLY A 361 UNP Q13887 EXPRESSION TAG SEQADV 2EBT SER A 362 UNP Q13887 EXPRESSION TAG SEQADV 2EBT SER A 363 UNP Q13887 EXPRESSION TAG SEQADV 2EBT GLY A 364 UNP Q13887 EXPRESSION TAG SEQRES 1 A 100 GLY SER SER GLY SER SER GLY PRO ASP LEU GLU LYS ARG SEQRES 2 A 100 ARG ILE HIS TYR CYS ASP TYR PRO GLY CYS THR LYS VAL SEQRES 3 A 100 TYR THR LYS SER SER HIS LEU LYS ALA HIS LEU ARG THR SEQRES 4 A 100 HIS THR GLY GLU LYS PRO TYR LYS CYS THR TRP GLU GLY SEQRES 5 A 100 CYS ASP TRP ARG PHE ALA ARG SER ASP GLU LEU THR ARG SEQRES 6 A 100 HIS TYR ARG LYS HIS THR GLY ALA LYS PRO PHE GLN CYS SEQRES 7 A 100 GLY VAL CYS ASN ARG SER PHE SER ARG SER ASP HIS LEU SEQRES 8 A 100 ALA LEU HIS MET LYS ARG HIS GLN ASN HET ZN A 100 1 HET ZN A 200 1 HET ZN A 300 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 LYS A 386 THR A 398 1 13 HELIX 2 2 ARG A 416 THR A 428 1 13 HELIX 3 3 ARG A 444 GLN A 456 1 13 SHEET 1 A 2 HIS A 373 TYR A 374 0 SHEET 2 A 2 VAL A 383 TYR A 384 -1 O TYR A 384 N HIS A 373 SHEET 1 B 2 TYR A 403 LYS A 404 0 SHEET 2 B 2 ARG A 413 PHE A 414 -1 O PHE A 414 N TYR A 403 LINK ZN ZN A 100 SG CYS A 375 1555 1555 2.29 LINK ZN ZN A 100 SG CYS A 380 1555 1555 2.25 LINK ZN ZN A 100 NE2 HIS A 393 1555 1555 2.03 LINK ZN ZN A 100 NE2 HIS A 397 1555 1555 2.00 LINK ZN ZN A 200 SG CYS A 405 1555 1555 2.33 LINK ZN ZN A 200 SG CYS A 410 1555 1555 2.35 LINK ZN ZN A 200 NE2 HIS A 423 1555 1555 2.05 LINK ZN ZN A 200 NE2 HIS A 427 1555 1555 2.05 LINK ZN ZN A 300 SG CYS A 435 1555 1555 2.32 LINK ZN ZN A 300 SG CYS A 438 1555 1555 2.31 LINK ZN ZN A 300 NE2 HIS A 451 1555 1555 2.01 LINK ZN ZN A 300 NE2 HIS A 455 1555 1555 2.05 SITE 1 AC1 4 CYS A 375 CYS A 380 HIS A 393 HIS A 397 SITE 1 AC2 4 CYS A 405 CYS A 410 HIS A 423 HIS A 427 SITE 1 AC3 4 CYS A 435 CYS A 438 HIS A 451 HIS A 455 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1