data_2EBU # _entry.id 2EBU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EBU pdb_00002ebu 10.2210/pdb2ebu/pdb RCSB RCSB026476 ? ? WWPDB D_1000026476 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003000047.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EBU _pdbx_database_status.recvd_initial_deposition_date 2007-02-09 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagashima, T.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the BRCT domain from human replication factor C large subunit 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagashima, T.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Replication factor C subunit 1' _entity.formula_weight 11852.476 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'BRCT domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Replication factor C large subunit, RF-C 140 kDa subunit, Activator 1 140 kDa subunit, Activator 1 large subunit, A1 140 kDa subunit, DNA-binding protein PO-GA ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAA LGTKIIDEDGLLNLIRTMPGKKSKYEIAVETE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGKALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAA LGTKIIDEDGLLNLIRTMPGKKSKYEIAVETE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003000047.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 ALA n 1 10 LEU n 1 11 GLY n 1 12 SER n 1 13 LYS n 1 14 GLU n 1 15 ILE n 1 16 PRO n 1 17 LYS n 1 18 GLY n 1 19 ALA n 1 20 GLU n 1 21 ASN n 1 22 CYS n 1 23 LEU n 1 24 GLU n 1 25 GLY n 1 26 LEU n 1 27 ILE n 1 28 PHE n 1 29 VAL n 1 30 ILE n 1 31 THR n 1 32 GLY n 1 33 VAL n 1 34 LEU n 1 35 GLU n 1 36 SER n 1 37 ILE n 1 38 GLU n 1 39 ARG n 1 40 ASP n 1 41 GLU n 1 42 ALA n 1 43 LYS n 1 44 SER n 1 45 LEU n 1 46 ILE n 1 47 GLU n 1 48 ARG n 1 49 TYR n 1 50 GLY n 1 51 GLY n 1 52 LYS n 1 53 VAL n 1 54 THR n 1 55 GLY n 1 56 ASN n 1 57 VAL n 1 58 SER n 1 59 LYS n 1 60 LYS n 1 61 THR n 1 62 ASN n 1 63 TYR n 1 64 LEU n 1 65 VAL n 1 66 MET n 1 67 GLY n 1 68 ARG n 1 69 ASP n 1 70 SER n 1 71 GLY n 1 72 GLN n 1 73 SER n 1 74 LYS n 1 75 SER n 1 76 ASP n 1 77 LYS n 1 78 ALA n 1 79 ALA n 1 80 ALA n 1 81 LEU n 1 82 GLY n 1 83 THR n 1 84 LYS n 1 85 ILE n 1 86 ILE n 1 87 ASP n 1 88 GLU n 1 89 ASP n 1 90 GLY n 1 91 LEU n 1 92 LEU n 1 93 ASN n 1 94 LEU n 1 95 ILE n 1 96 ARG n 1 97 THR n 1 98 MET n 1 99 PRO n 1 100 GLY n 1 101 LYS n 1 102 LYS n 1 103 SER n 1 104 LYS n 1 105 TYR n 1 106 GLU n 1 107 ILE n 1 108 ALA n 1 109 VAL n 1 110 GLU n 1 111 THR n 1 112 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060403-02 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RFC1_HUMAN _struct_ref.pdbx_db_accession P35251 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KALGSKEIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID EDGLLNLIRTMPGKKSKYEIAVETE ; _struct_ref.pdbx_align_begin 392 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EBU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P35251 _struct_ref_seq.db_align_beg 392 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 496 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 392 _struct_ref_seq.pdbx_auth_seq_align_end 496 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EBU GLY A 1 ? UNP P35251 ? ? 'cloning artifact' 385 1 1 2EBU SER A 2 ? UNP P35251 ? ? 'cloning artifact' 386 2 1 2EBU SER A 3 ? UNP P35251 ? ? 'cloning artifact' 387 3 1 2EBU GLY A 4 ? UNP P35251 ? ? 'cloning artifact' 388 4 1 2EBU SER A 5 ? UNP P35251 ? ? 'cloning artifact' 389 5 1 2EBU SER A 6 ? UNP P35251 ? ? 'cloning artifact' 390 6 1 2EBU GLY A 7 ? UNP P35251 ? ? 'cloning artifact' 391 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.17mM uniformly 13C/15N-labeled protein, 20mM TrisHCl, 100mM NaCl, 1mM DTT, 0.02% NaN3, 10% D2O, 90% H2O' _pdbx_nmr_sample_details.solvent_system '10% D2O, 90% H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EBU _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EBU _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EBU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20020425 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9822 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EBU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EBU _struct.title 'Solution structure of the BRCT domain from human replication factor C large subunit 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EBU _struct_keywords.pdbx_keywords REPLICATION _struct_keywords.text ;a/b/a 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, REPLICATION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 38 ? TYR A 49 ? GLU A 422 TYR A 433 1 ? 12 HELX_P HELX_P2 2 GLN A 72 ? GLY A 82 ? GLN A 456 GLY A 466 1 ? 11 HELX_P HELX_P3 3 GLU A 88 ? MET A 98 ? GLU A 472 MET A 482 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 52 ? VAL A 53 ? LYS A 436 VAL A 437 A 2 ILE A 27 ? ILE A 30 ? ILE A 411 ILE A 414 A 3 TYR A 63 ? MET A 66 ? TYR A 447 MET A 450 A 4 LYS A 84 ? ASP A 87 ? LYS A 468 ASP A 471 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 52 ? O LYS A 436 N PHE A 28 ? N PHE A 412 A 2 3 N ILE A 27 ? N ILE A 411 O TYR A 63 ? O TYR A 447 A 3 4 N MET A 66 ? N MET A 450 O ILE A 86 ? O ILE A 470 # _database_PDB_matrix.entry_id 2EBU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EBU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 385 385 GLY GLY A . n A 1 2 SER 2 386 386 SER SER A . n A 1 3 SER 3 387 387 SER SER A . n A 1 4 GLY 4 388 388 GLY GLY A . n A 1 5 SER 5 389 389 SER SER A . n A 1 6 SER 6 390 390 SER SER A . n A 1 7 GLY 7 391 391 GLY GLY A . n A 1 8 LYS 8 392 392 LYS LYS A . n A 1 9 ALA 9 393 393 ALA ALA A . n A 1 10 LEU 10 394 394 LEU LEU A . n A 1 11 GLY 11 395 395 GLY GLY A . n A 1 12 SER 12 396 396 SER SER A . n A 1 13 LYS 13 397 397 LYS LYS A . n A 1 14 GLU 14 398 398 GLU GLU A . n A 1 15 ILE 15 399 399 ILE ILE A . n A 1 16 PRO 16 400 400 PRO PRO A . n A 1 17 LYS 17 401 401 LYS LYS A . n A 1 18 GLY 18 402 402 GLY GLY A . n A 1 19 ALA 19 403 403 ALA ALA A . n A 1 20 GLU 20 404 404 GLU GLU A . n A 1 21 ASN 21 405 405 ASN ASN A . n A 1 22 CYS 22 406 406 CYS CYS A . n A 1 23 LEU 23 407 407 LEU LEU A . n A 1 24 GLU 24 408 408 GLU GLU A . n A 1 25 GLY 25 409 409 GLY GLY A . n A 1 26 LEU 26 410 410 LEU LEU A . n A 1 27 ILE 27 411 411 ILE ILE A . n A 1 28 PHE 28 412 412 PHE PHE A . n A 1 29 VAL 29 413 413 VAL VAL A . n A 1 30 ILE 30 414 414 ILE ILE A . n A 1 31 THR 31 415 415 THR THR A . n A 1 32 GLY 32 416 416 GLY GLY A . n A 1 33 VAL 33 417 417 VAL VAL A . n A 1 34 LEU 34 418 418 LEU LEU A . n A 1 35 GLU 35 419 419 GLU GLU A . n A 1 36 SER 36 420 420 SER SER A . n A 1 37 ILE 37 421 421 ILE ILE A . n A 1 38 GLU 38 422 422 GLU GLU A . n A 1 39 ARG 39 423 423 ARG ARG A . n A 1 40 ASP 40 424 424 ASP ASP A . n A 1 41 GLU 41 425 425 GLU GLU A . n A 1 42 ALA 42 426 426 ALA ALA A . n A 1 43 LYS 43 427 427 LYS LYS A . n A 1 44 SER 44 428 428 SER SER A . n A 1 45 LEU 45 429 429 LEU LEU A . n A 1 46 ILE 46 430 430 ILE ILE A . n A 1 47 GLU 47 431 431 GLU GLU A . n A 1 48 ARG 48 432 432 ARG ARG A . n A 1 49 TYR 49 433 433 TYR TYR A . n A 1 50 GLY 50 434 434 GLY GLY A . n A 1 51 GLY 51 435 435 GLY GLY A . n A 1 52 LYS 52 436 436 LYS LYS A . n A 1 53 VAL 53 437 437 VAL VAL A . n A 1 54 THR 54 438 438 THR THR A . n A 1 55 GLY 55 439 439 GLY GLY A . n A 1 56 ASN 56 440 440 ASN ASN A . n A 1 57 VAL 57 441 441 VAL VAL A . n A 1 58 SER 58 442 442 SER SER A . n A 1 59 LYS 59 443 443 LYS LYS A . n A 1 60 LYS 60 444 444 LYS LYS A . n A 1 61 THR 61 445 445 THR THR A . n A 1 62 ASN 62 446 446 ASN ASN A . n A 1 63 TYR 63 447 447 TYR TYR A . n A 1 64 LEU 64 448 448 LEU LEU A . n A 1 65 VAL 65 449 449 VAL VAL A . n A 1 66 MET 66 450 450 MET MET A . n A 1 67 GLY 67 451 451 GLY GLY A . n A 1 68 ARG 68 452 452 ARG ARG A . n A 1 69 ASP 69 453 453 ASP ASP A . n A 1 70 SER 70 454 454 SER SER A . n A 1 71 GLY 71 455 455 GLY GLY A . n A 1 72 GLN 72 456 456 GLN GLN A . n A 1 73 SER 73 457 457 SER SER A . n A 1 74 LYS 74 458 458 LYS LYS A . n A 1 75 SER 75 459 459 SER SER A . n A 1 76 ASP 76 460 460 ASP ASP A . n A 1 77 LYS 77 461 461 LYS LYS A . n A 1 78 ALA 78 462 462 ALA ALA A . n A 1 79 ALA 79 463 463 ALA ALA A . n A 1 80 ALA 80 464 464 ALA ALA A . n A 1 81 LEU 81 465 465 LEU LEU A . n A 1 82 GLY 82 466 466 GLY GLY A . n A 1 83 THR 83 467 467 THR THR A . n A 1 84 LYS 84 468 468 LYS LYS A . n A 1 85 ILE 85 469 469 ILE ILE A . n A 1 86 ILE 86 470 470 ILE ILE A . n A 1 87 ASP 87 471 471 ASP ASP A . n A 1 88 GLU 88 472 472 GLU GLU A . n A 1 89 ASP 89 473 473 ASP ASP A . n A 1 90 GLY 90 474 474 GLY GLY A . n A 1 91 LEU 91 475 475 LEU LEU A . n A 1 92 LEU 92 476 476 LEU LEU A . n A 1 93 ASN 93 477 477 ASN ASN A . n A 1 94 LEU 94 478 478 LEU LEU A . n A 1 95 ILE 95 479 479 ILE ILE A . n A 1 96 ARG 96 480 480 ARG ARG A . n A 1 97 THR 97 481 481 THR THR A . n A 1 98 MET 98 482 482 MET MET A . n A 1 99 PRO 99 483 483 PRO PRO A . n A 1 100 GLY 100 484 484 GLY GLY A . n A 1 101 LYS 101 485 485 LYS LYS A . n A 1 102 LYS 102 486 486 LYS LYS A . n A 1 103 SER 103 487 487 SER SER A . n A 1 104 LYS 104 488 488 LYS LYS A . n A 1 105 TYR 105 489 489 TYR TYR A . n A 1 106 GLU 106 490 490 GLU GLU A . n A 1 107 ILE 107 491 491 ILE ILE A . n A 1 108 ALA 108 492 492 ALA ALA A . n A 1 109 VAL 109 493 493 VAL VAL A . n A 1 110 GLU 110 494 494 GLU GLU A . n A 1 111 THR 111 495 495 THR THR A . n A 1 112 GLU 112 496 496 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 386 ? ? -166.74 110.63 2 1 ALA A 393 ? ? 36.87 47.00 3 1 ARG A 423 ? ? -39.84 -37.88 4 1 ASP A 453 ? ? 34.54 38.00 5 1 PRO A 483 ? ? -69.81 -178.42 6 1 ALA A 492 ? ? -61.51 -178.39 7 1 VAL A 493 ? ? 34.17 39.70 8 2 SER A 390 ? ? -86.08 42.93 9 2 GLU A 419 ? ? -94.73 -69.58 10 2 ASP A 453 ? ? 34.75 39.01 11 2 PRO A 483 ? ? -69.74 -165.18 12 2 LYS A 488 ? ? -91.45 43.50 13 3 SER A 420 ? ? -39.74 -31.60 14 3 ASP A 424 ? ? -92.56 -65.86 15 3 ASP A 453 ? ? 34.56 39.04 16 3 PRO A 483 ? ? -69.71 -173.26 17 3 LYS A 486 ? ? 33.15 47.59 18 3 ALA A 492 ? ? 34.43 48.04 19 4 SER A 396 ? ? 48.29 28.20 20 4 ASP A 453 ? ? 34.41 38.80 21 4 GLN A 456 ? ? 36.16 30.80 22 4 GLU A 472 ? ? -35.31 -32.79 23 4 PRO A 483 ? ? -69.74 -166.39 24 4 SER A 487 ? ? -173.88 142.38 25 4 ALA A 492 ? ? -45.54 153.75 26 5 SER A 389 ? ? -130.42 -49.81 27 5 ARG A 423 ? ? -38.14 -31.75 28 5 ASN A 440 ? ? -170.96 124.96 29 5 ASP A 453 ? ? 34.08 36.34 30 5 PRO A 483 ? ? -69.76 -165.86 31 5 GLU A 490 ? ? -37.93 139.71 32 6 ALA A 393 ? ? -114.72 50.97 33 6 ASP A 453 ? ? 34.42 36.95 34 6 PRO A 483 ? ? -69.84 -170.31 35 6 THR A 495 ? ? -48.37 158.52 36 7 GLU A 419 ? ? -102.74 -67.07 37 7 ASP A 453 ? ? 36.39 44.89 38 7 PRO A 483 ? ? -69.74 -163.82 39 8 ASP A 453 ? ? 35.68 53.46 40 8 GLU A 472 ? ? -39.80 -25.83 41 8 PRO A 483 ? ? -69.80 -164.49 42 8 GLU A 494 ? ? -49.52 167.23 43 9 SER A 387 ? ? -166.02 118.20 44 9 SER A 389 ? ? 35.41 43.50 45 9 LYS A 392 ? ? 34.62 44.21 46 9 ASP A 453 ? ? 34.37 48.17 47 9 PRO A 483 ? ? -69.73 -164.89 48 10 SER A 420 ? ? -37.67 -39.25 49 10 ARG A 423 ? ? -38.36 -35.23 50 10 ASP A 453 ? ? 34.56 40.07 51 10 ASP A 460 ? ? -37.60 -70.04 52 10 PRO A 483 ? ? -69.73 -163.99 53 11 ASP A 453 ? ? 34.45 38.05 54 11 PRO A 483 ? ? -69.78 -165.91 55 11 ALA A 492 ? ? -107.66 65.93 56 12 ASP A 453 ? ? 38.29 46.83 57 12 PRO A 483 ? ? -69.72 -164.17 58 12 LYS A 486 ? ? 33.23 46.77 59 13 ASP A 453 ? ? 34.32 37.29 60 13 PRO A 483 ? ? -69.78 -165.75 61 14 SER A 420 ? ? -48.45 -71.87 62 14 GLU A 422 ? ? -59.49 178.83 63 14 ASP A 453 ? ? 34.43 37.55 64 14 PRO A 483 ? ? -69.67 -165.05 65 15 SER A 389 ? ? -41.14 100.76 66 15 LEU A 394 ? ? -37.57 98.02 67 15 ARG A 423 ? ? -35.68 -32.63 68 15 PRO A 483 ? ? -69.69 -168.87 69 16 SER A 396 ? ? -96.71 34.04 70 16 ASP A 453 ? ? 34.40 38.12 71 16 PRO A 483 ? ? -69.73 -175.10 72 17 SER A 386 ? ? -39.87 148.26 73 17 ARG A 423 ? ? -39.29 -36.43 74 17 ASP A 453 ? ? 38.02 45.59 75 17 PRO A 483 ? ? -69.83 -164.34 76 18 ASN A 440 ? ? -168.67 114.08 77 18 PRO A 483 ? ? -69.83 -166.69 78 18 ILE A 491 ? ? -112.84 70.17 79 19 GLU A 422 ? ? -65.57 -175.55 80 19 ASP A 453 ? ? 37.72 46.99 81 19 PRO A 483 ? ? -69.77 -165.48 82 20 GLU A 425 ? ? -36.75 -71.03 83 20 ASP A 453 ? ? 34.53 38.54 84 20 GLU A 472 ? ? -38.96 -30.96 85 20 PRO A 483 ? ? -69.75 -164.49 86 20 ILE A 491 ? ? -116.48 74.22 87 20 ALA A 492 ? ? 38.71 52.39 #