data_2EBW # _entry.id 2EBW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EBW pdb_00002ebw 10.2210/pdb2ebw/pdb RCSB RCSB026478 ? ? WWPDB D_1000026478 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso003006822.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EBW _pdbx_database_status.recvd_initial_deposition_date 2007-02-09 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagashima, T.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the BRCT domain from human DNA repair protein REV1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagashima, T.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'DNA repair protein REV1' _entity.formula_weight 10784.303 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.7.7.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'BRCT domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rev1-like terminal deoxycytidyl transferase, Alpha integrin-binding protein 80, AIBP80' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGTSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVE SIKAGRLLSYIPYQLYT ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGTSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVE SIKAGRLLSYIPYQLYT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso003006822.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 THR n 1 9 SER n 1 10 SER n 1 11 THR n 1 12 ILE n 1 13 PHE n 1 14 SER n 1 15 GLY n 1 16 VAL n 1 17 ALA n 1 18 ILE n 1 19 TYR n 1 20 VAL n 1 21 ASN n 1 22 GLY n 1 23 TYR n 1 24 THR n 1 25 ASP n 1 26 PRO n 1 27 SER n 1 28 ALA n 1 29 GLU n 1 30 GLU n 1 31 LEU n 1 32 ARG n 1 33 LYS n 1 34 LEU n 1 35 MET n 1 36 MET n 1 37 LEU n 1 38 HIS n 1 39 GLY n 1 40 GLY n 1 41 GLN n 1 42 TYR n 1 43 HIS n 1 44 VAL n 1 45 TYR n 1 46 TYR n 1 47 SER n 1 48 ARG n 1 49 SER n 1 50 LYS n 1 51 THR n 1 52 THR n 1 53 HIS n 1 54 ILE n 1 55 ILE n 1 56 ALA n 1 57 THR n 1 58 ASN n 1 59 LEU n 1 60 PRO n 1 61 ASN n 1 62 ALA n 1 63 LYS n 1 64 ILE n 1 65 LYS n 1 66 GLU n 1 67 LEU n 1 68 LYS n 1 69 GLY n 1 70 GLU n 1 71 LYS n 1 72 VAL n 1 73 ILE n 1 74 ARG n 1 75 PRO n 1 76 GLU n 1 77 TRP n 1 78 ILE n 1 79 VAL n 1 80 GLU n 1 81 SER n 1 82 ILE n 1 83 LYS n 1 84 ALA n 1 85 GLY n 1 86 ARG n 1 87 LEU n 1 88 LEU n 1 89 SER n 1 90 TYR n 1 91 ILE n 1 92 PRO n 1 93 TYR n 1 94 GLN n 1 95 LEU n 1 96 TYR n 1 97 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060821-10 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code REV1_HUMAN _struct_ref.pdbx_db_accession Q9UBZ9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRL LSYIPYQLYT ; _struct_ref.pdbx_align_begin 44 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EBW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UBZ9 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 133 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 44 _struct_ref_seq.pdbx_auth_seq_align_end 133 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EBW GLY A 1 ? UNP Q9UBZ9 ? ? 'cloning artifact' 37 1 1 2EBW SER A 2 ? UNP Q9UBZ9 ? ? 'cloning artifact' 38 2 1 2EBW SER A 3 ? UNP Q9UBZ9 ? ? 'cloning artifact' 39 3 1 2EBW GLY A 4 ? UNP Q9UBZ9 ? ? 'cloning artifact' 40 4 1 2EBW SER A 5 ? UNP Q9UBZ9 ? ? 'cloning artifact' 41 5 1 2EBW SER A 6 ? UNP Q9UBZ9 ? ? 'cloning artifact' 42 6 1 2EBW GLY A 7 ? UNP Q9UBZ9 ? ? 'cloning artifact' 43 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.76mM uniformly 13C/15N-labeled protein, 20mM TrisHCl, 100mM NaCl, 1mM DTT, 0.02% NaN3, 10% D2O, 90% H2O' _pdbx_nmr_sample_details.solvent_system '10% D2O, 90% H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EBW _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EBW _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EBW _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20020425 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9822 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EBW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EBW _struct.title 'Solution structure of the BRCT domain from human DNA repair protein REV1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EBW _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;a/b/a 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 27 ? HIS A 38 ? SER A 63 HIS A 74 1 ? 12 HELX_P HELX_P2 2 ALA A 62 ? LEU A 67 ? ALA A 98 LEU A 103 1 ? 6 HELX_P HELX_P3 3 PRO A 75 ? GLY A 85 ? PRO A 111 GLY A 121 1 ? 11 HELX_P HELX_P4 4 TYR A 90 ? GLN A 94 ? TYR A 126 GLN A 130 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 1 0.05 2 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 2 0.06 3 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 3 0.09 4 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 4 0.05 5 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 5 -0.01 6 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 6 0.06 7 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 7 0.09 8 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 8 0.04 9 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 9 -0.03 10 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 10 0.00 11 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 11 -0.06 12 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 12 -0.03 13 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 13 0.08 14 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 14 -0.02 15 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 15 -0.01 16 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 16 0.09 17 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 17 0.03 18 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 18 0.02 19 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 19 0.03 20 ASP 25 A . ? ASP 61 A PRO 26 A ? PRO 62 A 20 0.03 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 41 ? TYR A 42 ? GLN A 77 TYR A 78 A 2 ALA A 17 ? VAL A 20 ? ALA A 53 VAL A 56 A 3 HIS A 53 ? ILE A 55 ? HIS A 89 ILE A 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 41 ? O GLN A 77 N ILE A 18 ? N ILE A 54 A 2 3 N ALA A 17 ? N ALA A 53 O HIS A 53 ? O HIS A 89 # _database_PDB_matrix.entry_id 2EBW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EBW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 37 37 GLY GLY A . n A 1 2 SER 2 38 38 SER SER A . n A 1 3 SER 3 39 39 SER SER A . n A 1 4 GLY 4 40 40 GLY GLY A . n A 1 5 SER 5 41 41 SER SER A . n A 1 6 SER 6 42 42 SER SER A . n A 1 7 GLY 7 43 43 GLY GLY A . n A 1 8 THR 8 44 44 THR THR A . n A 1 9 SER 9 45 45 SER SER A . n A 1 10 SER 10 46 46 SER SER A . n A 1 11 THR 11 47 47 THR THR A . n A 1 12 ILE 12 48 48 ILE ILE A . n A 1 13 PHE 13 49 49 PHE PHE A . n A 1 14 SER 14 50 50 SER SER A . n A 1 15 GLY 15 51 51 GLY GLY A . n A 1 16 VAL 16 52 52 VAL VAL A . n A 1 17 ALA 17 53 53 ALA ALA A . n A 1 18 ILE 18 54 54 ILE ILE A . n A 1 19 TYR 19 55 55 TYR TYR A . n A 1 20 VAL 20 56 56 VAL VAL A . n A 1 21 ASN 21 57 57 ASN ASN A . n A 1 22 GLY 22 58 58 GLY GLY A . n A 1 23 TYR 23 59 59 TYR TYR A . n A 1 24 THR 24 60 60 THR THR A . n A 1 25 ASP 25 61 61 ASP ASP A . n A 1 26 PRO 26 62 62 PRO PRO A . n A 1 27 SER 27 63 63 SER SER A . n A 1 28 ALA 28 64 64 ALA ALA A . n A 1 29 GLU 29 65 65 GLU GLU A . n A 1 30 GLU 30 66 66 GLU GLU A . n A 1 31 LEU 31 67 67 LEU LEU A . n A 1 32 ARG 32 68 68 ARG ARG A . n A 1 33 LYS 33 69 69 LYS LYS A . n A 1 34 LEU 34 70 70 LEU LEU A . n A 1 35 MET 35 71 71 MET MET A . n A 1 36 MET 36 72 72 MET MET A . n A 1 37 LEU 37 73 73 LEU LEU A . n A 1 38 HIS 38 74 74 HIS HIS A . n A 1 39 GLY 39 75 75 GLY GLY A . n A 1 40 GLY 40 76 76 GLY GLY A . n A 1 41 GLN 41 77 77 GLN GLN A . n A 1 42 TYR 42 78 78 TYR TYR A . n A 1 43 HIS 43 79 79 HIS HIS A . n A 1 44 VAL 44 80 80 VAL VAL A . n A 1 45 TYR 45 81 81 TYR TYR A . n A 1 46 TYR 46 82 82 TYR TYR A . n A 1 47 SER 47 83 83 SER SER A . n A 1 48 ARG 48 84 84 ARG ARG A . n A 1 49 SER 49 85 85 SER SER A . n A 1 50 LYS 50 86 86 LYS LYS A . n A 1 51 THR 51 87 87 THR THR A . n A 1 52 THR 52 88 88 THR THR A . n A 1 53 HIS 53 89 89 HIS HIS A . n A 1 54 ILE 54 90 90 ILE ILE A . n A 1 55 ILE 55 91 91 ILE ILE A . n A 1 56 ALA 56 92 92 ALA ALA A . n A 1 57 THR 57 93 93 THR THR A . n A 1 58 ASN 58 94 94 ASN ASN A . n A 1 59 LEU 59 95 95 LEU LEU A . n A 1 60 PRO 60 96 96 PRO PRO A . n A 1 61 ASN 61 97 97 ASN ASN A . n A 1 62 ALA 62 98 98 ALA ALA A . n A 1 63 LYS 63 99 99 LYS LYS A . n A 1 64 ILE 64 100 100 ILE ILE A . n A 1 65 LYS 65 101 101 LYS LYS A . n A 1 66 GLU 66 102 102 GLU GLU A . n A 1 67 LEU 67 103 103 LEU LEU A . n A 1 68 LYS 68 104 104 LYS LYS A . n A 1 69 GLY 69 105 105 GLY GLY A . n A 1 70 GLU 70 106 106 GLU GLU A . n A 1 71 LYS 71 107 107 LYS LYS A . n A 1 72 VAL 72 108 108 VAL VAL A . n A 1 73 ILE 73 109 109 ILE ILE A . n A 1 74 ARG 74 110 110 ARG ARG A . n A 1 75 PRO 75 111 111 PRO PRO A . n A 1 76 GLU 76 112 112 GLU GLU A . n A 1 77 TRP 77 113 113 TRP TRP A . n A 1 78 ILE 78 114 114 ILE ILE A . n A 1 79 VAL 79 115 115 VAL VAL A . n A 1 80 GLU 80 116 116 GLU GLU A . n A 1 81 SER 81 117 117 SER SER A . n A 1 82 ILE 82 118 118 ILE ILE A . n A 1 83 LYS 83 119 119 LYS LYS A . n A 1 84 ALA 84 120 120 ALA ALA A . n A 1 85 GLY 85 121 121 GLY GLY A . n A 1 86 ARG 86 122 122 ARG ARG A . n A 1 87 LEU 87 123 123 LEU LEU A . n A 1 88 LEU 88 124 124 LEU LEU A . n A 1 89 SER 89 125 125 SER SER A . n A 1 90 TYR 90 126 126 TYR TYR A . n A 1 91 ILE 91 127 127 ILE ILE A . n A 1 92 PRO 92 128 128 PRO PRO A . n A 1 93 TYR 93 129 129 TYR TYR A . n A 1 94 GLN 94 130 130 GLN GLN A . n A 1 95 LEU 95 131 131 LEU LEU A . n A 1 96 TYR 96 132 132 TYR TYR A . n A 1 97 THR 97 133 133 THR THR A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 47 ? ? -106.02 44.17 2 1 PRO A 62 ? ? -69.75 -176.29 3 1 LEU A 70 ? ? -34.74 -34.01 4 1 LYS A 86 ? ? -66.91 -71.89 5 1 PRO A 111 ? ? -69.74 1.99 6 1 LEU A 131 ? ? -62.99 -74.77 7 2 PRO A 62 ? ? -69.79 -178.38 8 2 LYS A 86 ? ? -71.39 -71.05 9 2 LYS A 101 ? ? -59.84 -70.10 10 2 GLU A 102 ? ? -38.68 -27.25 11 2 LEU A 103 ? ? -102.75 40.44 12 2 PRO A 111 ? ? -69.78 0.04 13 2 PRO A 128 ? ? -69.81 1.03 14 2 TYR A 132 ? ? 37.10 38.85 15 3 LEU A 70 ? ? -37.17 -39.45 16 3 LYS A 86 ? ? -60.94 -72.10 17 3 LEU A 103 ? ? -85.59 32.81 18 3 GLU A 106 ? ? -41.47 163.16 19 3 PRO A 128 ? ? -69.79 0.41 20 4 THR A 47 ? ? -106.52 49.42 21 4 LEU A 70 ? ? -34.57 -32.91 22 4 LYS A 86 ? ? -77.90 -74.10 23 4 LEU A 103 ? ? -98.16 41.17 24 4 PRO A 111 ? ? -69.78 3.09 25 4 PRO A 128 ? ? -69.76 1.51 26 5 SER A 38 ? ? 39.61 44.26 27 5 SER A 39 ? ? -40.48 101.83 28 5 THR A 47 ? ? -101.43 49.55 29 5 LEU A 103 ? ? -86.04 39.39 30 5 TYR A 132 ? ? 37.59 44.36 31 6 THR A 44 ? ? 38.05 49.07 32 6 PRO A 62 ? ? -69.78 -179.79 33 6 LEU A 103 ? ? -96.41 35.22 34 6 GLU A 106 ? ? -51.44 -178.96 35 6 PRO A 111 ? ? -69.77 0.00 36 6 PRO A 128 ? ? -69.80 2.91 37 7 THR A 47 ? ? -101.38 53.61 38 7 SER A 63 ? ? -52.27 170.03 39 7 MET A 71 ? ? -78.86 -70.79 40 7 TYR A 82 ? ? -38.20 126.60 41 7 LYS A 86 ? ? -97.67 -65.12 42 7 ASN A 97 ? ? -38.79 -33.91 43 7 GLU A 106 ? ? -50.30 172.49 44 7 TYR A 132 ? ? 37.37 52.98 45 8 THR A 47 ? ? 43.30 27.74 46 8 TYR A 82 ? ? -35.86 125.30 47 8 LYS A 86 ? ? -78.67 -73.93 48 8 GLU A 106 ? ? -49.10 163.10 49 8 PRO A 111 ? ? -69.77 2.94 50 8 LEU A 124 ? ? -92.87 -75.14 51 8 SER A 125 ? ? -175.07 147.63 52 8 LEU A 131 ? ? -70.27 -74.93 53 9 THR A 47 ? ? -113.11 56.33 54 9 SER A 63 ? ? -57.60 179.74 55 9 LYS A 86 ? ? -91.90 -60.57 56 9 GLU A 106 ? ? -47.56 167.19 57 9 TYR A 132 ? ? -31.42 97.17 58 10 THR A 47 ? ? -99.10 42.28 59 10 SER A 63 ? ? -58.37 -179.91 60 10 LYS A 86 ? ? -77.19 -72.23 61 10 GLU A 106 ? ? -38.65 158.46 62 10 PRO A 111 ? ? -69.74 2.57 63 10 LEU A 131 ? ? -63.29 -72.45 64 11 SER A 41 ? ? -172.64 126.63 65 11 THR A 44 ? ? -62.01 84.98 66 11 THR A 47 ? ? -115.38 52.08 67 11 HIS A 74 ? ? -94.13 30.49 68 11 LEU A 103 ? ? -109.22 57.48 69 11 GLU A 106 ? ? -50.86 172.60 70 11 PRO A 111 ? ? -69.80 2.28 71 11 ARG A 122 ? ? -171.23 146.79 72 11 TYR A 132 ? ? 34.34 46.94 73 12 PRO A 62 ? ? -69.68 -171.74 74 12 TYR A 82 ? ? -39.76 139.11 75 12 LYS A 86 ? ? -73.98 -73.14 76 12 LEU A 103 ? ? -103.54 44.23 77 12 GLU A 106 ? ? -43.58 163.39 78 12 LYS A 107 ? ? -109.12 78.40 79 13 SER A 50 ? ? -53.63 108.56 80 13 PRO A 62 ? ? -69.79 -170.99 81 13 LEU A 70 ? ? -34.62 -33.63 82 13 LEU A 103 ? ? -85.50 39.47 83 13 GLU A 106 ? ? -52.42 170.79 84 13 PRO A 111 ? ? -69.83 0.59 85 13 LEU A 131 ? ? -49.20 -74.03 86 13 TYR A 132 ? ? -93.60 58.08 87 14 SER A 39 ? ? -42.00 160.13 88 14 SER A 63 ? ? -54.33 175.13 89 14 LYS A 86 ? ? -64.88 -73.09 90 14 GLU A 106 ? ? -41.39 163.73 91 14 TYR A 132 ? ? 34.21 48.83 92 15 THR A 47 ? ? -105.56 55.28 93 15 PRO A 62 ? ? -69.72 -171.73 94 15 LYS A 86 ? ? -66.82 -75.04 95 15 LEU A 103 ? ? -109.97 55.27 96 15 GLU A 106 ? ? -52.85 174.15 97 15 VAL A 115 ? ? -37.99 -34.93 98 16 SER A 41 ? ? -56.27 96.41 99 16 SER A 42 ? ? -37.00 129.67 100 16 THR A 47 ? ? 36.00 50.30 101 16 PRO A 62 ? ? -69.78 -166.53 102 16 MET A 71 ? ? -44.08 -70.61 103 16 TYR A 82 ? ? -39.28 136.68 104 16 LYS A 86 ? ? -62.73 -71.21 105 16 LEU A 103 ? ? -80.94 41.26 106 16 GLU A 106 ? ? -51.53 172.69 107 16 TYR A 132 ? ? 33.97 40.56 108 17 TYR A 55 ? ? -167.13 105.53 109 17 HIS A 74 ? ? -89.78 30.06 110 17 LYS A 86 ? ? -89.40 -74.44 111 17 LEU A 103 ? ? -82.61 37.57 112 17 PRO A 111 ? ? -69.74 1.22 113 18 THR A 47 ? ? -90.29 35.79 114 18 SER A 63 ? ? -59.94 176.86 115 18 MET A 71 ? ? -61.94 -70.30 116 18 LYS A 86 ? ? -63.94 -73.00 117 18 GLU A 106 ? ? -58.53 176.86 118 18 PRO A 111 ? ? -69.75 2.28 119 19 SER A 46 ? ? -101.38 -66.42 120 19 PRO A 62 ? ? -69.70 -171.55 121 19 LYS A 86 ? ? -63.57 -73.72 122 19 LEU A 103 ? ? -90.94 44.26 123 19 GLU A 106 ? ? -46.76 171.44 124 19 PRO A 111 ? ? -69.74 2.51 125 20 SER A 46 ? ? -36.56 140.66 126 20 PRO A 62 ? ? -69.72 -175.07 127 20 THR A 87 ? ? -48.95 162.54 128 20 THR A 88 ? ? -121.94 -50.17 129 20 GLU A 106 ? ? -47.44 163.88 130 20 ARG A 122 ? ? -172.08 145.17 131 20 TYR A 132 ? ? 34.85 49.46 #