HEADER TRANSFERASE 09-FEB-07 2EBW TITLE SOLUTION STRUCTURE OF THE BRCT DOMAIN FROM HUMAN DNA REPAIR PROTEIN TITLE 2 REV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN; COMPND 5 SYNONYM: REV1-LIKE TERMINAL DEOXYCYTIDYL TRANSFERASE, ALPHA INTEGRIN- COMPND 6 BINDING PROTEIN 80, AIBP80; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060821-10; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS A/B/A 3 LAYERS, PARALLEL BETA-SHEET, DNA REPLICATION, TRANSLESSION KEYWDS 2 SYNTHESIS, TLS, DNA POLYMERASE ZETA, PCNA, STRUCTURAL GENOMICS, KEYWDS 3 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EBW 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EBW 1 VERSN REVDAT 1 14-AUG-07 2EBW 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE BRCT DOMAIN FROM HUMAN DNA REPAIR JRNL TITL 2 PROTEIN REV1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EBW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026478. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.76MM UNIFORMLY 13C/15N-LABELED REMARK 210 PROTEIN, 20MM TRISHCL, 100MM REMARK 210 NACL, 1MM DTT, 0.02% NAN3, 10% REMARK 210 D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 47 44.17 -106.02 REMARK 500 1 PRO A 62 -176.29 -69.75 REMARK 500 1 LEU A 70 -34.01 -34.74 REMARK 500 1 LYS A 86 -71.89 -66.91 REMARK 500 1 PRO A 111 1.99 -69.74 REMARK 500 1 LEU A 131 -74.77 -62.99 REMARK 500 2 PRO A 62 -178.38 -69.79 REMARK 500 2 LYS A 86 -71.05 -71.39 REMARK 500 2 LYS A 101 -70.10 -59.84 REMARK 500 2 GLU A 102 -27.25 -38.68 REMARK 500 2 LEU A 103 40.44 -102.75 REMARK 500 2 PRO A 111 0.04 -69.78 REMARK 500 2 PRO A 128 1.03 -69.81 REMARK 500 2 TYR A 132 38.85 37.10 REMARK 500 3 LEU A 70 -39.45 -37.17 REMARK 500 3 LYS A 86 -72.10 -60.94 REMARK 500 3 LEU A 103 32.81 -85.59 REMARK 500 3 GLU A 106 163.16 -41.47 REMARK 500 3 PRO A 128 0.41 -69.79 REMARK 500 4 THR A 47 49.42 -106.52 REMARK 500 4 LEU A 70 -32.91 -34.57 REMARK 500 4 LYS A 86 -74.10 -77.90 REMARK 500 4 LEU A 103 41.17 -98.16 REMARK 500 4 PRO A 111 3.09 -69.78 REMARK 500 4 PRO A 128 1.51 -69.76 REMARK 500 5 SER A 38 44.26 39.61 REMARK 500 5 SER A 39 101.83 -40.48 REMARK 500 5 THR A 47 49.55 -101.43 REMARK 500 5 LEU A 103 39.39 -86.04 REMARK 500 5 TYR A 132 44.36 37.59 REMARK 500 6 THR A 44 49.07 38.05 REMARK 500 6 PRO A 62 -179.79 -69.78 REMARK 500 6 LEU A 103 35.22 -96.41 REMARK 500 6 GLU A 106 -178.96 -51.44 REMARK 500 6 PRO A 111 0.00 -69.77 REMARK 500 6 PRO A 128 2.91 -69.80 REMARK 500 7 THR A 47 53.61 -101.38 REMARK 500 7 SER A 63 170.03 -52.27 REMARK 500 7 MET A 71 -70.79 -78.86 REMARK 500 7 TYR A 82 126.60 -38.20 REMARK 500 7 LYS A 86 -65.12 -97.67 REMARK 500 7 ASN A 97 -33.91 -38.79 REMARK 500 7 GLU A 106 172.49 -50.30 REMARK 500 7 TYR A 132 52.98 37.37 REMARK 500 8 THR A 47 27.74 43.30 REMARK 500 8 TYR A 82 125.30 -35.86 REMARK 500 8 LYS A 86 -73.93 -78.67 REMARK 500 8 GLU A 106 163.10 -49.10 REMARK 500 8 PRO A 111 2.94 -69.77 REMARK 500 8 LEU A 124 -75.14 -92.87 REMARK 500 REMARK 500 THIS ENTRY HAS 131 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006822.1 RELATED DB: TARGETDB DBREF 2EBW A 44 133 UNP Q9UBZ9 REV1_HUMAN 44 133 SEQADV 2EBW GLY A 37 UNP Q9UBZ9 CLONING ARTIFACT SEQADV 2EBW SER A 38 UNP Q9UBZ9 CLONING ARTIFACT SEQADV 2EBW SER A 39 UNP Q9UBZ9 CLONING ARTIFACT SEQADV 2EBW GLY A 40 UNP Q9UBZ9 CLONING ARTIFACT SEQADV 2EBW SER A 41 UNP Q9UBZ9 CLONING ARTIFACT SEQADV 2EBW SER A 42 UNP Q9UBZ9 CLONING ARTIFACT SEQADV 2EBW GLY A 43 UNP Q9UBZ9 CLONING ARTIFACT SEQRES 1 A 97 GLY SER SER GLY SER SER GLY THR SER SER THR ILE PHE SEQRES 2 A 97 SER GLY VAL ALA ILE TYR VAL ASN GLY TYR THR ASP PRO SEQRES 3 A 97 SER ALA GLU GLU LEU ARG LYS LEU MET MET LEU HIS GLY SEQRES 4 A 97 GLY GLN TYR HIS VAL TYR TYR SER ARG SER LYS THR THR SEQRES 5 A 97 HIS ILE ILE ALA THR ASN LEU PRO ASN ALA LYS ILE LYS SEQRES 6 A 97 GLU LEU LYS GLY GLU LYS VAL ILE ARG PRO GLU TRP ILE SEQRES 7 A 97 VAL GLU SER ILE LYS ALA GLY ARG LEU LEU SER TYR ILE SEQRES 8 A 97 PRO TYR GLN LEU TYR THR HELIX 1 1 SER A 63 HIS A 74 1 12 HELIX 2 2 ALA A 98 LEU A 103 1 6 HELIX 3 3 PRO A 111 GLY A 121 1 11 HELIX 4 4 TYR A 126 GLN A 130 5 5 SHEET 1 A 3 GLN A 77 TYR A 78 0 SHEET 2 A 3 ALA A 53 VAL A 56 1 N ILE A 54 O GLN A 77 SHEET 3 A 3 HIS A 89 ILE A 91 1 O HIS A 89 N ALA A 53 CISPEP 1 ASP A 61 PRO A 62 1 0.05 CISPEP 2 ASP A 61 PRO A 62 2 0.06 CISPEP 3 ASP A 61 PRO A 62 3 0.09 CISPEP 4 ASP A 61 PRO A 62 4 0.05 CISPEP 5 ASP A 61 PRO A 62 5 -0.01 CISPEP 6 ASP A 61 PRO A 62 6 0.06 CISPEP 7 ASP A 61 PRO A 62 7 0.09 CISPEP 8 ASP A 61 PRO A 62 8 0.04 CISPEP 9 ASP A 61 PRO A 62 9 -0.03 CISPEP 10 ASP A 61 PRO A 62 10 0.00 CISPEP 11 ASP A 61 PRO A 62 11 -0.06 CISPEP 12 ASP A 61 PRO A 62 12 -0.03 CISPEP 13 ASP A 61 PRO A 62 13 0.08 CISPEP 14 ASP A 61 PRO A 62 14 -0.02 CISPEP 15 ASP A 61 PRO A 62 15 -0.01 CISPEP 16 ASP A 61 PRO A 62 16 0.09 CISPEP 17 ASP A 61 PRO A 62 17 0.03 CISPEP 18 ASP A 61 PRO A 62 18 0.02 CISPEP 19 ASP A 61 PRO A 62 19 0.03 CISPEP 20 ASP A 61 PRO A 62 20 0.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1