HEADER TRANSPORT PROTEIN 09-FEB-07 2EC1 TITLE SOLUTION STRUCTURE OF THE RANBD1 DOMAIN FROM HUMAN NUCLEOPORIN 50 KDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN 50 KDA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RANBP DOMAIN; COMPND 5 SYNONYM: NUCLEAR PORE-ASSOCIATED PROTEIN 60 KDA-LIKE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUP50, NPAP60L, PRO1146; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060320-24; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS RANBP DOMAIN, NUCLEOPORIN 50 KDA, NUCLEAR PORE-ASSOCIATED PROTEIN 60 KEYWDS 2 KDA-LIKE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.P.ZHANG,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EC1 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EC1 1 VERSN REVDAT 1 14-AUG-07 2EC1 0 JRNL AUTH H.P.ZHANG,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RANBD1 DOMAIN FROM HUMAN JRNL TITL 2 NUCLEOPORIN 50 KDA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3.2, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTENT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EC1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026482. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14 MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL(PH7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04, REMARK 210 KUJIRA 0.9818, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 67 108.72 -54.08 REMARK 500 5 ALA A 44 -33.29 -38.82 REMARK 500 5 LEU A 58 -64.36 -90.71 REMARK 500 5 ILE A 67 109.96 -52.74 REMARK 500 7 ALA A 54 174.64 -57.91 REMARK 500 7 LEU A 58 -36.50 -36.39 REMARK 500 8 ALA A 54 171.68 -52.30 REMARK 500 8 LEU A 58 104.48 -53.77 REMARK 500 9 ILE A 67 108.83 -56.44 REMARK 500 9 MET A 71 107.13 -52.09 REMARK 500 10 ASP A 13 -39.68 -38.39 REMARK 500 11 ALA A 44 -39.39 -33.96 REMARK 500 11 GLU A 110 -30.69 -38.53 REMARK 500 11 LEU A 115 -28.45 -39.45 REMARK 500 12 ALA A 96 -60.41 -92.64 REMARK 500 14 ILE A 67 109.99 -52.43 REMARK 500 14 GLU A 110 -39.96 -38.79 REMARK 500 15 ALA A 54 177.59 -58.76 REMARK 500 15 GLU A 110 -39.27 -35.40 REMARK 500 16 THR A 56 172.99 -55.51 REMARK 500 16 GLU A 110 -38.37 -39.71 REMARK 500 17 VAL A 9 32.05 37.71 REMARK 500 17 LEU A 58 -66.85 -94.11 REMARK 500 18 ALA A 44 -34.32 -39.77 REMARK 500 19 GLU A 110 -38.59 -38.03 REMARK 500 20 ASP A 55 -60.53 -96.31 REMARK 500 20 GLU A 110 -38.21 -39.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011663.1 RELATED DB: TARGETDB DBREF 2EC1 A 8 125 UNP Q9UKX7 NUP50_HUMAN 351 468 SEQADV 2EC1 GLY A 1 UNP Q9UKX7 CLONING ARTIFACT SEQADV 2EC1 SER A 2 UNP Q9UKX7 CLONING ARTIFACT SEQADV 2EC1 SER A 3 UNP Q9UKX7 CLONING ARTIFACT SEQADV 2EC1 GLY A 4 UNP Q9UKX7 CLONING ARTIFACT SEQADV 2EC1 SER A 5 UNP Q9UKX7 CLONING ARTIFACT SEQADV 2EC1 SER A 6 UNP Q9UKX7 CLONING ARTIFACT SEQADV 2EC1 GLY A 7 UNP Q9UKX7 CLONING ARTIFACT SEQRES 1 A 125 GLY SER SER GLY SER SER GLY GLU VAL LYS GLU GLU ASP SEQRES 2 A 125 ALA PHE TYR SER LYS LYS CYS LYS LEU PHE TYR LYS LYS SEQRES 3 A 125 ASP ASN GLU PHE LYS GLU LYS GLY ILE GLY THR LEU HIS SEQRES 4 A 125 LEU LYS PRO THR ALA ASN GLN LYS THR GLN LEU LEU VAL SEQRES 5 A 125 ARG ALA ASP THR ASN LEU GLY ASN ILE LEU LEU ASN VAL SEQRES 6 A 125 LEU ILE PRO PRO ASN MET PRO CYS THR ARG THR GLY LYS SEQRES 7 A 125 ASN ASN VAL LEU ILE VAL CYS VAL PRO ASN PRO PRO ILE SEQRES 8 A 125 ASP GLU LYS ASN ALA THR MET PRO VAL THR MET LEU ILE SEQRES 9 A 125 ARG VAL LYS THR SER GLU ASP ALA ASP GLU LEU HIS LYS SEQRES 10 A 125 ILE LEU LEU GLU LYS LYS ASP ALA HELIX 1 1 THR A 108 ALA A 125 1 18 SHEET 1 A 7 VAL A 65 LEU A 66 0 SHEET 2 A 7 THR A 48 ALA A 54 -1 N LEU A 50 O VAL A 65 SHEET 3 A 7 PHE A 30 PRO A 42 -1 N HIS A 39 O LEU A 51 SHEET 4 A 7 TYR A 16 LYS A 25 -1 N CYS A 20 O GLY A 36 SHEET 5 A 7 VAL A 100 ARG A 105 -1 O LEU A 103 N PHE A 23 SHEET 6 A 7 ASN A 80 CYS A 85 -1 N VAL A 81 O ILE A 104 SHEET 7 A 7 CYS A 73 THR A 74 -1 N THR A 74 O LEU A 82 CISPEP 1 ASN A 88 PRO A 89 1 -0.07 CISPEP 2 ASN A 88 PRO A 89 2 -0.08 CISPEP 3 ASN A 88 PRO A 89 3 -0.05 CISPEP 4 ASN A 88 PRO A 89 4 -0.04 CISPEP 5 ASN A 88 PRO A 89 5 -0.08 CISPEP 6 ASN A 88 PRO A 89 6 -0.04 CISPEP 7 ASN A 88 PRO A 89 7 -0.07 CISPEP 8 ASN A 88 PRO A 89 8 -0.04 CISPEP 9 ASN A 88 PRO A 89 9 -0.08 CISPEP 10 ASN A 88 PRO A 89 10 -0.01 CISPEP 11 ASN A 88 PRO A 89 11 -0.10 CISPEP 12 ASN A 88 PRO A 89 12 -0.07 CISPEP 13 ASN A 88 PRO A 89 13 -0.04 CISPEP 14 ASN A 88 PRO A 89 14 -0.06 CISPEP 15 ASN A 88 PRO A 89 15 -0.09 CISPEP 16 ASN A 88 PRO A 89 16 -0.03 CISPEP 17 ASN A 88 PRO A 89 17 -0.12 CISPEP 18 ASN A 88 PRO A 89 18 -0.06 CISPEP 19 ASN A 88 PRO A 89 19 -0.01 CISPEP 20 ASN A 88 PRO A 89 20 -0.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1