data_2ED8 # _entry.id 2ED8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ED8 pdb_00002ed8 10.2210/pdb2ed8/pdb RCSB RCSB026521 ? ? WWPDB D_1000026521 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001052.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ED8 _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Koshiba, S.' 2 'Tomizawa, T.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the second fibronectin type III domain of human Netrin receptor DCC' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Tomizawa, T.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Netrin receptor DCC' _entity.formula_weight 11204.281 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'second fn3 domain, Fibronectin type-III 2' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tumor suppressor protein DCC, Colorectal cancer suppressor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLA YNRYGPGVSTDDITVVTLSDSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLA YNRYGPGVSTDDITVVTLSDSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001052.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 GLY n 1 10 PRO n 1 11 VAL n 1 12 GLU n 1 13 ASN n 1 14 LEU n 1 15 GLN n 1 16 ALA n 1 17 VAL n 1 18 SER n 1 19 THR n 1 20 SER n 1 21 PRO n 1 22 THR n 1 23 SER n 1 24 ILE n 1 25 LEU n 1 26 ILE n 1 27 THR n 1 28 TRP n 1 29 GLU n 1 30 PRO n 1 31 PRO n 1 32 ALA n 1 33 TYR n 1 34 ALA n 1 35 ASN n 1 36 GLY n 1 37 PRO n 1 38 VAL n 1 39 GLN n 1 40 GLY n 1 41 TYR n 1 42 ARG n 1 43 LEU n 1 44 PHE n 1 45 CYS n 1 46 THR n 1 47 GLU n 1 48 VAL n 1 49 SER n 1 50 THR n 1 51 GLY n 1 52 LYS n 1 53 GLU n 1 54 GLN n 1 55 ASN n 1 56 ILE n 1 57 GLU n 1 58 VAL n 1 59 ASP n 1 60 GLY n 1 61 LEU n 1 62 SER n 1 63 TYR n 1 64 LYS n 1 65 LEU n 1 66 GLU n 1 67 GLY n 1 68 LEU n 1 69 LYS n 1 70 LYS n 1 71 PHE n 1 72 THR n 1 73 GLU n 1 74 TYR n 1 75 SER n 1 76 LEU n 1 77 ARG n 1 78 PHE n 1 79 LEU n 1 80 ALA n 1 81 TYR n 1 82 ASN n 1 83 ARG n 1 84 TYR n 1 85 GLY n 1 86 PRO n 1 87 GLY n 1 88 VAL n 1 89 SER n 1 90 THR n 1 91 ASP n 1 92 ASP n 1 93 ILE n 1 94 THR n 1 95 VAL n 1 96 VAL n 1 97 THR n 1 98 LEU n 1 99 SER n 1 100 ASP n 1 101 SER n 1 102 GLY n 1 103 PRO n 1 104 SER n 1 105 SER n 1 106 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene DCC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050905-21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCC_HUMAN _struct_ref.pdbx_db_accession P43146 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPG VSTDDITVVTLSD ; _struct_ref.pdbx_align_begin 528 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ED8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 100 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43146 _struct_ref_seq.db_align_beg 528 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 620 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 100 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ED8 GLY A 1 ? UNP P43146 ? ? 'expression tag' 1 1 1 2ED8 SER A 2 ? UNP P43146 ? ? 'expression tag' 2 2 1 2ED8 SER A 3 ? UNP P43146 ? ? 'expression tag' 3 3 1 2ED8 GLY A 4 ? UNP P43146 ? ? 'expression tag' 4 4 1 2ED8 SER A 5 ? UNP P43146 ? ? 'expression tag' 5 5 1 2ED8 SER A 6 ? UNP P43146 ? ? 'expression tag' 6 6 1 2ED8 GLY A 7 ? UNP P43146 ? ? 'expression tag' 7 7 1 2ED8 SER A 101 ? UNP P43146 ? ? 'expression tag' 101 8 1 2ED8 GLY A 102 ? UNP P43146 ? ? 'expression tag' 102 9 1 2ED8 PRO A 103 ? UNP P43146 ? ? 'expression tag' 103 10 1 2ED8 SER A 104 ? UNP P43146 ? ? 'expression tag' 104 11 1 2ED8 SER A 105 ? UNP P43146 ? ? 'expression tag' 105 12 1 2ED8 GLY A 106 ? UNP P43146 ? ? 'expression tag' 106 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.2mM sample U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O, 90% H2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2ED8 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2ED8 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2ED8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMNMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2ED8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2ED8 _struct.title 'Solution structure of the second fibronectin type III domain of human Netrin receptor DCC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ED8 _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text ;Tumor suppressor protein DCC, Colorectal cancer suppressor, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Apoptosis ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 12 ? VAL A 17 ? GLU A 12 VAL A 17 A 2 SER A 23 ? GLU A 29 ? SER A 23 GLU A 29 A 3 TYR A 63 ? GLU A 66 ? TYR A 63 GLU A 66 B 1 GLU A 53 ? VAL A 58 ? GLU A 53 VAL A 58 B 2 GLY A 40 ? GLU A 47 ? GLY A 40 GLU A 47 B 3 GLU A 73 ? TYR A 81 ? GLU A 73 TYR A 81 B 4 PRO A 86 ? SER A 89 ? PRO A 86 SER A 89 C 1 GLU A 53 ? VAL A 58 ? GLU A 53 VAL A 58 C 2 GLY A 40 ? GLU A 47 ? GLY A 40 GLU A 47 C 3 GLU A 73 ? TYR A 81 ? GLU A 73 TYR A 81 C 4 ILE A 93 ? VAL A 96 ? ILE A 93 VAL A 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 15 ? N GLN A 15 O THR A 27 ? O THR A 27 A 2 3 N ILE A 24 ? N ILE A 24 O LEU A 65 ? O LEU A 65 B 1 2 O ILE A 56 ? O ILE A 56 N LEU A 43 ? N LEU A 43 B 2 3 N THR A 46 ? N THR A 46 O SER A 75 ? O SER A 75 B 3 4 N ALA A 80 ? N ALA A 80 O GLY A 87 ? O GLY A 87 C 1 2 O ILE A 56 ? O ILE A 56 N LEU A 43 ? N LEU A 43 C 2 3 N THR A 46 ? N THR A 46 O SER A 75 ? O SER A 75 C 3 4 N LEU A 76 ? N LEU A 76 O ILE A 93 ? O ILE A 93 # _database_PDB_matrix.entry_id 2ED8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ED8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 GLY 106 106 106 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 11 ? ? -44.59 170.11 2 1 ASN A 13 ? ? 34.79 45.72 3 1 ILE A 24 ? ? -162.09 104.97 4 1 PRO A 37 ? ? -69.72 -171.87 5 1 SER A 62 ? ? -174.64 120.07 6 1 LYS A 70 ? ? -27.14 -72.62 7 1 GLU A 73 ? ? -57.41 102.15 8 1 ASP A 92 ? ? -39.05 110.91 9 1 LEU A 98 ? ? -57.44 -174.00 10 1 PRO A 103 ? ? -69.71 82.62 11 2 VAL A 11 ? ? -49.69 168.18 12 2 ASN A 13 ? ? 37.77 47.50 13 2 ILE A 24 ? ? -162.12 104.96 14 2 TYR A 33 ? ? -85.43 44.98 15 2 PRO A 37 ? ? -69.78 -179.23 16 2 SER A 62 ? ? -175.38 123.35 17 2 LYS A 70 ? ? -29.75 -72.11 18 2 GLU A 73 ? ? -59.44 104.24 19 2 LEU A 98 ? ? -61.87 -174.37 20 2 PRO A 103 ? ? -69.77 3.18 21 3 SER A 2 ? ? -83.51 47.29 22 3 SER A 5 ? ? -162.81 106.68 23 3 VAL A 11 ? ? -41.92 164.61 24 3 ILE A 24 ? ? -161.66 105.02 25 3 TYR A 33 ? ? -92.83 57.71 26 3 PRO A 37 ? ? -69.72 -177.39 27 3 LYS A 70 ? ? -30.69 -72.07 28 3 LEU A 98 ? ? -58.85 -174.11 29 4 VAL A 11 ? ? -48.42 176.41 30 4 ASN A 13 ? ? 37.06 46.60 31 4 ILE A 24 ? ? -162.45 104.96 32 4 TYR A 33 ? ? -83.10 46.17 33 4 PRO A 37 ? ? -69.76 -178.83 34 4 GLU A 47 ? ? -65.91 98.12 35 4 SER A 62 ? ? -175.13 132.88 36 4 LYS A 70 ? ? -33.55 -71.97 37 4 GLU A 73 ? ? -53.75 104.51 38 4 ASP A 92 ? ? -33.85 124.35 39 4 LEU A 98 ? ? -59.08 -175.08 40 4 ASP A 100 ? ? -63.68 80.76 41 4 SER A 101 ? ? 33.83 41.66 42 5 ILE A 24 ? ? -162.11 104.92 43 5 TYR A 33 ? ? -100.33 59.26 44 5 PRO A 37 ? ? -69.79 -174.98 45 5 LYS A 70 ? ? -32.30 -71.28 46 5 GLU A 73 ? ? -57.60 106.95 47 5 ASP A 92 ? ? -35.92 112.24 48 5 LEU A 98 ? ? -56.66 -174.44 49 5 ASP A 100 ? ? -53.87 99.88 50 6 SER A 5 ? ? -35.12 150.70 51 6 VAL A 11 ? ? -62.83 -178.40 52 6 ASN A 13 ? ? 38.79 47.87 53 6 ILE A 24 ? ? -162.52 104.97 54 6 TYR A 33 ? ? -88.64 43.27 55 6 ASN A 35 ? ? -65.86 94.44 56 6 PRO A 37 ? ? -69.81 -176.51 57 6 LYS A 70 ? ? -32.35 -70.77 58 6 ARG A 83 ? ? -36.51 -37.22 59 6 THR A 90 ? ? -47.63 167.17 60 6 ASP A 92 ? ? -32.37 118.39 61 6 THR A 97 ? ? -45.31 154.30 62 6 LEU A 98 ? ? -59.46 -175.12 63 6 SER A 101 ? ? -34.57 143.24 64 7 PRO A 8 ? ? -69.75 -178.95 65 7 VAL A 11 ? ? -47.75 172.44 66 7 ILE A 24 ? ? -162.46 105.04 67 7 TYR A 33 ? ? -99.71 56.70 68 7 PRO A 37 ? ? -69.76 -176.97 69 7 SER A 62 ? ? -174.77 120.81 70 7 LYS A 70 ? ? -28.78 -71.41 71 7 GLU A 73 ? ? -55.16 102.94 72 7 LEU A 98 ? ? -59.51 -174.48 73 8 SER A 2 ? ? 71.97 42.03 74 8 VAL A 11 ? ? -47.14 164.87 75 8 ILE A 24 ? ? -162.77 104.96 76 8 TYR A 33 ? ? -100.41 44.36 77 8 PRO A 37 ? ? -69.78 -174.47 78 8 LYS A 70 ? ? -32.49 -71.64 79 8 ARG A 83 ? ? -34.13 -36.93 80 8 ASP A 92 ? ? -34.37 117.14 81 8 LEU A 98 ? ? -64.27 -174.17 82 8 ASP A 100 ? ? -60.09 97.54 83 8 PRO A 103 ? ? -69.76 2.14 84 9 VAL A 11 ? ? -43.28 167.62 85 9 ASN A 13 ? ? 39.32 45.49 86 9 ILE A 24 ? ? -162.42 105.02 87 9 TYR A 33 ? ? -96.97 46.05 88 9 GLN A 39 ? ? -38.88 -38.11 89 9 SER A 62 ? ? -175.27 132.13 90 9 LYS A 70 ? ? -32.28 -71.07 91 9 GLU A 73 ? ? -58.96 103.44 92 9 ASP A 92 ? ? -55.51 105.68 93 9 LEU A 98 ? ? -62.09 -174.94 94 10 PRO A 8 ? ? -69.76 -173.43 95 10 VAL A 11 ? ? -47.83 166.84 96 10 ASN A 13 ? ? 34.85 46.08 97 10 ILE A 24 ? ? -162.75 105.34 98 10 TYR A 33 ? ? -92.03 43.63 99 10 PRO A 37 ? ? -69.77 -176.03 100 10 SER A 62 ? ? -174.83 122.50 101 10 LYS A 70 ? ? -32.63 -71.60 102 10 GLU A 73 ? ? -55.00 108.04 103 10 LEU A 98 ? ? -57.46 -175.11 104 11 VAL A 11 ? ? -44.73 165.38 105 11 ILE A 24 ? ? -162.68 105.06 106 11 TYR A 33 ? ? -97.63 42.28 107 11 LYS A 70 ? ? -35.01 -72.32 108 11 ARG A 83 ? ? -38.17 -34.40 109 11 LEU A 98 ? ? -57.04 -173.60 110 11 ASP A 100 ? ? -80.33 48.03 111 11 SER A 101 ? ? -48.28 108.50 112 12 SER A 2 ? ? 39.40 41.92 113 12 PRO A 8 ? ? -69.76 -174.25 114 12 ILE A 24 ? ? -162.62 105.09 115 12 PRO A 37 ? ? -69.84 -172.29 116 12 SER A 62 ? ? -174.20 135.24 117 12 LYS A 70 ? ? -30.72 -72.32 118 12 GLU A 73 ? ? -54.38 109.21 119 12 ASP A 92 ? ? -33.78 115.58 120 12 LEU A 98 ? ? -57.46 -174.55 121 12 SER A 105 ? ? -80.60 44.38 122 13 PRO A 8 ? ? -69.73 -178.66 123 13 VAL A 11 ? ? -46.92 163.31 124 13 ILE A 24 ? ? -161.67 105.06 125 13 TYR A 33 ? ? -102.89 40.39 126 13 SER A 62 ? ? -174.04 134.57 127 13 LYS A 70 ? ? -34.85 -75.21 128 13 GLU A 73 ? ? -54.93 105.99 129 13 LEU A 98 ? ? -54.72 -173.67 130 14 SER A 2 ? ? -101.71 42.18 131 14 SER A 5 ? ? -41.30 109.66 132 14 VAL A 11 ? ? -41.80 164.79 133 14 ILE A 24 ? ? -162.26 105.00 134 14 TYR A 33 ? ? -84.10 40.11 135 14 LYS A 70 ? ? -32.64 -71.74 136 14 ASP A 92 ? ? -44.78 102.70 137 14 LEU A 98 ? ? -59.89 -175.04 138 15 SER A 2 ? ? -165.35 119.82 139 15 SER A 3 ? ? -62.04 95.47 140 15 ASN A 13 ? ? 37.85 48.27 141 15 ILE A 24 ? ? -162.56 104.97 142 15 PRO A 37 ? ? -69.74 -176.30 143 15 SER A 62 ? ? -175.02 126.66 144 15 LYS A 70 ? ? -31.56 -71.28 145 15 GLU A 73 ? ? -52.73 107.15 146 15 ARG A 83 ? ? -39.62 -34.34 147 15 ASP A 92 ? ? -39.87 111.93 148 15 LEU A 98 ? ? -55.52 -174.80 149 15 PRO A 103 ? ? -69.73 10.23 150 15 SER A 104 ? ? -31.84 133.05 151 15 SER A 105 ? ? -48.69 177.10 152 16 VAL A 11 ? ? -48.20 175.62 153 16 ASN A 13 ? ? 34.86 43.76 154 16 ILE A 24 ? ? -162.14 105.30 155 16 PRO A 37 ? ? -69.71 -176.98 156 16 SER A 62 ? ? -175.15 123.60 157 16 LYS A 70 ? ? -28.92 -71.55 158 16 GLU A 73 ? ? -55.89 106.38 159 16 ASP A 92 ? ? -34.18 125.89 160 16 LEU A 98 ? ? -60.12 -173.80 161 16 SER A 105 ? ? -64.56 82.93 162 17 VAL A 11 ? ? -69.16 -179.04 163 17 ASN A 13 ? ? 33.43 43.56 164 17 ILE A 24 ? ? -162.76 105.02 165 17 TYR A 33 ? ? -87.14 43.06 166 17 LYS A 70 ? ? -31.63 -71.70 167 17 GLU A 73 ? ? -59.38 105.32 168 17 ARG A 83 ? ? -36.56 -34.20 169 17 THR A 90 ? ? -44.75 161.20 170 17 ASP A 92 ? ? -43.88 103.36 171 17 LEU A 98 ? ? -59.03 -174.01 172 18 SER A 2 ? ? -134.69 -44.32 173 18 VAL A 11 ? ? -44.14 165.16 174 18 ASN A 13 ? ? 39.77 47.32 175 18 ILE A 24 ? ? -162.70 105.04 176 18 TYR A 33 ? ? -101.01 64.97 177 18 ASN A 35 ? ? -69.53 88.21 178 18 PRO A 37 ? ? -69.70 -172.60 179 18 SER A 62 ? ? -175.05 131.79 180 18 LYS A 70 ? ? -27.16 -73.27 181 18 GLU A 73 ? ? -54.79 102.15 182 18 ARG A 83 ? ? -34.65 -39.79 183 18 ASP A 92 ? ? -37.75 115.49 184 18 LEU A 98 ? ? -59.71 -173.53 185 18 SER A 105 ? ? -170.05 148.36 186 19 ILE A 24 ? ? -161.87 105.05 187 19 ASN A 35 ? ? -68.83 79.89 188 19 PRO A 37 ? ? -69.77 -173.22 189 19 SER A 62 ? ? -175.12 123.34 190 19 LYS A 70 ? ? -28.53 -72.25 191 19 GLU A 73 ? ? -58.08 99.55 192 19 THR A 97 ? ? -48.87 152.20 193 19 LEU A 98 ? ? -61.07 -174.34 194 20 SER A 6 ? ? -117.65 -73.25 195 20 VAL A 11 ? ? -46.54 173.99 196 20 ASN A 13 ? ? 37.97 42.75 197 20 ILE A 24 ? ? -161.78 106.23 198 20 ASN A 35 ? ? -69.98 96.15 199 20 PRO A 37 ? ? -69.75 -172.24 200 20 SER A 62 ? ? -175.03 125.35 201 20 LYS A 70 ? ? -26.17 -73.03 202 20 ASP A 92 ? ? -34.51 117.88 203 20 LEU A 98 ? ? -64.34 -174.18 #