data_2ED9 # _entry.id 2ED9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ED9 pdb_00002ed9 10.2210/pdb2ed9/pdb RCSB RCSB026522 ? ? WWPDB D_1000026522 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001052.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ED9 _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Koshiba, S.' 2 'Kigawa, T.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the third fibronectin type III domain of human Netrin receptor DCC' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Kigawa, T.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Netrin receptor DCC' _entity.formula_weight 13449.764 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'third fn3 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tumor suppressor protein DCC, Colorectal cancer suppressor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETL EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPEN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETL EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001052.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASN n 1 9 ARG n 1 10 TYR n 1 11 GLY n 1 12 PRO n 1 13 GLY n 1 14 VAL n 1 15 SER n 1 16 THR n 1 17 ASP n 1 18 ASP n 1 19 ILE n 1 20 THR n 1 21 VAL n 1 22 VAL n 1 23 THR n 1 24 LEU n 1 25 SER n 1 26 ASP n 1 27 VAL n 1 28 PRO n 1 29 SER n 1 30 ALA n 1 31 PRO n 1 32 PRO n 1 33 GLN n 1 34 ASN n 1 35 VAL n 1 36 SER n 1 37 LEU n 1 38 GLU n 1 39 VAL n 1 40 VAL n 1 41 ASN n 1 42 SER n 1 43 ARG n 1 44 SER n 1 45 ILE n 1 46 LYS n 1 47 VAL n 1 48 SER n 1 49 TRP n 1 50 LEU n 1 51 PRO n 1 52 PRO n 1 53 PRO n 1 54 SER n 1 55 GLY n 1 56 THR n 1 57 GLN n 1 58 ASN n 1 59 GLY n 1 60 PHE n 1 61 ILE n 1 62 THR n 1 63 GLY n 1 64 TYR n 1 65 LYS n 1 66 ILE n 1 67 ARG n 1 68 HIS n 1 69 ARG n 1 70 LYS n 1 71 THR n 1 72 THR n 1 73 ARG n 1 74 ARG n 1 75 GLY n 1 76 GLU n 1 77 MET n 1 78 GLU n 1 79 THR n 1 80 LEU n 1 81 GLU n 1 82 PRO n 1 83 ASN n 1 84 ASN n 1 85 LEU n 1 86 TRP n 1 87 TYR n 1 88 LEU n 1 89 PHE n 1 90 THR n 1 91 GLY n 1 92 LEU n 1 93 GLU n 1 94 LYS n 1 95 GLY n 1 96 SER n 1 97 GLN n 1 98 TYR n 1 99 SER n 1 100 PHE n 1 101 GLN n 1 102 VAL n 1 103 SER n 1 104 ALA n 1 105 MET n 1 106 THR n 1 107 VAL n 1 108 ASN n 1 109 GLY n 1 110 THR n 1 111 GLY n 1 112 PRO n 1 113 PRO n 1 114 SER n 1 115 ASN n 1 116 TRP n 1 117 TYR n 1 118 THR n 1 119 ALA n 1 120 GLU n 1 121 THR n 1 122 PRO n 1 123 GLU n 1 124 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene DCC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060515-03 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCC_HUMAN _struct_ref.pdbx_db_accession P43146 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNLWY LFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPEN ; _struct_ref.pdbx_align_begin 602 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ED9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 124 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43146 _struct_ref_seq.db_align_beg 602 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 718 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ED9 GLY A 1 ? UNP P43146 ? ? 'expression tag' 1 1 1 2ED9 SER A 2 ? UNP P43146 ? ? 'expression tag' 2 2 1 2ED9 SER A 3 ? UNP P43146 ? ? 'expression tag' 3 3 1 2ED9 GLY A 4 ? UNP P43146 ? ? 'expression tag' 4 4 1 2ED9 SER A 5 ? UNP P43146 ? ? 'expression tag' 5 5 1 2ED9 SER A 6 ? UNP P43146 ? ? 'expression tag' 6 6 1 2ED9 GLY A 7 ? UNP P43146 ? ? 'expression tag' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.5mM sample U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2ED9 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2ED9 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2ED9 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMNMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2ED9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2ED9 _struct.title 'Solution structure of the third fibronectin type III domain of human Netrin receptor DCC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ED9 _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text ;Tumor suppressor protein DCC, Colorectal cancer suppressor, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, APOPTOSIS ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 37 ? ASN A 41 ? LEU A 37 ASN A 41 A 2 SER A 44 ? SER A 48 ? SER A 44 SER A 48 A 3 TRP A 86 ? THR A 90 ? TRP A 86 THR A 90 B 1 MET A 77 ? LEU A 80 ? MET A 77 LEU A 80 B 2 GLY A 63 ? LYS A 70 ? GLY A 63 LYS A 70 B 3 VAL A 102 ? MET A 105 ? VAL A 102 MET A 105 C 1 MET A 77 ? LEU A 80 ? MET A 77 LEU A 80 C 2 GLY A 63 ? LYS A 70 ? GLY A 63 LYS A 70 C 3 GLN A 97 ? PHE A 100 ? GLN A 97 PHE A 100 C 4 TYR A 117 ? GLU A 120 ? TYR A 117 GLU A 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 41 ? N ASN A 41 O SER A 44 ? O SER A 44 A 2 3 N ILE A 45 ? N ILE A 45 O PHE A 89 ? O PHE A 89 B 1 2 O THR A 79 ? O THR A 79 N ILE A 66 ? N ILE A 66 B 2 3 N LYS A 65 ? N LYS A 65 O SER A 103 ? O SER A 103 C 1 2 O THR A 79 ? O THR A 79 N ILE A 66 ? N ILE A 66 C 2 3 N ARG A 69 ? N ARG A 69 O SER A 99 ? O SER A 99 C 3 4 N TYR A 98 ? N TYR A 98 O ALA A 119 ? O ALA A 119 # _database_PDB_matrix.entry_id 2ED9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ED9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 MET 77 77 77 MET MET A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 TRP 86 86 86 TRP TRP A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 TRP 116 116 116 TRP TRP A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 ASN 124 124 124 ASN ASN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 12 ? ? -69.78 -179.06 2 1 VAL A 14 ? ? -58.51 170.44 3 1 ALA A 30 ? ? -172.18 141.06 4 1 ILE A 61 ? ? -35.38 121.26 5 1 ARG A 73 ? ? -36.25 146.20 6 1 ARG A 74 ? ? -34.41 137.37 7 1 GLU A 76 ? ? -65.74 -176.03 8 1 ASN A 83 ? ? -48.01 -74.46 9 1 LEU A 85 ? ? -98.20 42.02 10 2 ASN A 8 ? ? -173.25 130.70 11 2 VAL A 22 ? ? -95.15 33.71 12 2 VAL A 27 ? ? -41.55 151.63 13 2 PRO A 32 ? ? -69.81 -163.86 14 2 ILE A 61 ? ? -57.88 102.40 15 2 ASN A 108 ? ? -101.55 -65.53 16 3 SER A 5 ? ? -172.76 141.55 17 3 ASN A 8 ? ? -173.06 113.03 18 3 SER A 15 ? ? -173.26 125.59 19 3 PHE A 60 ? ? -36.15 118.02 20 3 ILE A 61 ? ? -59.22 102.47 21 3 ASN A 83 ? ? -39.76 -70.55 22 3 LEU A 85 ? ? -83.80 36.15 23 4 TYR A 10 ? ? -172.79 142.68 24 4 PRO A 12 ? ? -69.71 -178.40 25 4 VAL A 22 ? ? -111.04 52.00 26 4 VAL A 27 ? ? -34.71 151.29 27 4 PRO A 32 ? ? -69.70 -163.99 28 4 THR A 72 ? ? -82.11 -73.49 29 4 ARG A 74 ? ? -93.90 59.20 30 4 MET A 77 ? ? -164.65 118.27 31 4 ASN A 83 ? ? -48.24 -73.50 32 4 ASN A 108 ? ? -91.96 -69.38 33 4 ASN A 115 ? ? -38.37 141.11 34 5 SER A 5 ? ? -174.54 133.44 35 5 VAL A 14 ? ? -172.02 116.72 36 5 VAL A 22 ? ? -107.77 46.42 37 5 ASP A 26 ? ? -116.30 70.58 38 5 ASN A 58 ? ? -113.26 57.51 39 5 ILE A 61 ? ? -54.10 106.90 40 5 THR A 72 ? ? 38.62 38.29 41 5 GLU A 76 ? ? -46.57 156.66 42 5 LEU A 85 ? ? -84.46 35.22 43 5 VAL A 107 ? ? -49.46 -18.57 44 5 ASN A 108 ? ? -90.72 -75.13 45 5 ASN A 115 ? ? -37.48 130.75 46 6 PRO A 12 ? ? -69.77 -169.71 47 6 LEU A 85 ? ? -91.69 43.70 48 7 SER A 5 ? ? -174.69 119.37 49 7 SER A 6 ? ? -124.68 -61.53 50 7 ASN A 8 ? ? -171.46 117.33 51 7 TYR A 10 ? ? -92.77 -60.83 52 7 PRO A 12 ? ? -69.81 -172.35 53 7 VAL A 39 ? ? -66.63 98.77 54 7 THR A 72 ? ? -121.67 -57.27 55 7 THR A 79 ? ? -160.75 113.95 56 7 ASN A 83 ? ? -44.54 -75.17 57 7 LEU A 85 ? ? -83.72 34.79 58 7 ASN A 108 ? ? -93.11 -68.16 59 8 ASN A 8 ? ? -173.37 126.87 60 8 ARG A 9 ? ? -173.05 117.51 61 8 PRO A 12 ? ? -69.74 95.09 62 8 PRO A 32 ? ? -69.79 -167.93 63 8 SER A 54 ? ? -37.74 -33.29 64 8 GLN A 57 ? ? -36.36 93.66 65 8 ASN A 108 ? ? -104.00 -75.03 66 9 ASN A 8 ? ? -172.75 110.61 67 9 PRO A 12 ? ? -69.82 -169.77 68 9 SER A 15 ? ? -174.61 133.77 69 9 VAL A 22 ? ? -107.07 78.32 70 9 PRO A 32 ? ? -69.74 -174.36 71 9 SER A 54 ? ? -35.37 140.04 72 9 GLN A 57 ? ? -94.33 56.60 73 9 PHE A 60 ? ? -36.30 136.44 74 9 THR A 72 ? ? -87.65 -71.95 75 9 ARG A 73 ? ? -69.40 79.39 76 9 GLU A 76 ? ? -38.49 128.44 77 9 ASN A 108 ? ? -99.57 -67.15 78 10 SER A 2 ? ? -170.39 110.53 79 10 ARG A 9 ? ? -172.67 133.35 80 10 PRO A 12 ? ? -69.78 -178.12 81 10 VAL A 27 ? ? -46.25 152.52 82 10 THR A 56 ? ? -35.82 -36.60 83 10 THR A 71 ? ? -42.92 92.65 84 10 MET A 77 ? ? -172.15 134.77 85 10 ASN A 83 ? ? -44.84 -70.72 86 10 VAL A 107 ? ? -39.45 -30.35 87 10 ASN A 108 ? ? -70.03 -74.51 88 10 PRO A 113 ? ? -69.72 -175.18 89 10 TRP A 116 ? ? -67.03 90.47 90 11 SER A 6 ? ? -171.34 132.70 91 11 ARG A 9 ? ? -175.04 140.91 92 11 VAL A 22 ? ? -100.30 49.13 93 11 VAL A 27 ? ? -36.82 152.05 94 11 THR A 56 ? ? -114.56 51.35 95 11 THR A 72 ? ? -96.37 39.11 96 11 ARG A 73 ? ? 36.29 53.43 97 11 LEU A 85 ? ? -83.48 40.46 98 11 ASN A 115 ? ? -47.79 159.76 99 12 PRO A 12 ? ? -69.80 -177.80 100 12 PRO A 32 ? ? -69.77 -167.87 101 12 SER A 54 ? ? -36.25 -36.31 102 12 GLN A 57 ? ? -39.29 92.64 103 12 ASN A 58 ? ? -116.87 72.91 104 12 PHE A 60 ? ? -51.25 100.78 105 12 THR A 72 ? ? -96.25 58.31 106 12 ASN A 83 ? ? -34.42 -71.07 107 12 LEU A 85 ? ? -84.62 31.68 108 12 ASN A 108 ? ? -95.46 -70.66 109 12 GLU A 123 ? ? -38.71 -35.01 110 13 SER A 2 ? ? -174.42 125.29 111 13 SER A 5 ? ? -174.91 117.21 112 13 PRO A 12 ? ? -69.76 -176.86 113 13 THR A 20 ? ? -58.06 -175.07 114 13 VAL A 21 ? ? -35.52 142.11 115 13 THR A 23 ? ? -39.21 99.28 116 13 ASP A 26 ? ? -83.82 35.02 117 13 GLN A 57 ? ? -49.88 91.16 118 13 ARG A 73 ? ? -55.47 109.15 119 14 SER A 3 ? ? -172.83 134.79 120 14 SER A 5 ? ? -173.58 147.29 121 14 SER A 6 ? ? -173.92 137.05 122 14 ASN A 8 ? ? -173.72 118.39 123 14 TYR A 10 ? ? -173.93 137.32 124 14 PRO A 12 ? ? -69.72 -167.74 125 14 SER A 15 ? ? -172.86 141.17 126 14 VAL A 22 ? ? -106.35 42.27 127 14 VAL A 27 ? ? -37.89 155.29 128 14 ASN A 83 ? ? -34.34 -70.55 129 14 LEU A 85 ? ? -88.44 31.10 130 15 GLN A 57 ? ? -61.63 93.99 131 15 ASN A 83 ? ? -59.53 -75.13 132 15 LEU A 85 ? ? -87.65 38.38 133 15 ASN A 108 ? ? -96.52 -72.10 134 16 SER A 6 ? ? -132.54 -50.74 135 16 ARG A 9 ? ? -170.08 142.91 136 16 ASP A 17 ? ? -174.29 117.66 137 16 VAL A 22 ? ? -107.66 57.79 138 16 VAL A 39 ? ? -69.52 95.42 139 16 GLN A 57 ? ? -40.27 102.10 140 16 ASN A 58 ? ? -104.38 68.10 141 16 ILE A 61 ? ? -63.76 87.57 142 16 ARG A 74 ? ? -38.17 112.49 143 16 LYS A 94 ? ? -42.03 151.84 144 17 ASP A 18 ? ? -173.25 134.48 145 17 THR A 23 ? ? -65.86 99.70 146 17 GLN A 57 ? ? -38.13 99.13 147 17 ARG A 73 ? ? -37.55 156.33 148 17 ARG A 74 ? ? -41.96 162.39 149 17 SER A 114 ? ? -49.55 161.29 150 17 ASN A 115 ? ? -37.70 146.07 151 18 ARG A 9 ? ? -173.53 123.90 152 18 ASP A 17 ? ? -167.15 119.50 153 18 VAL A 21 ? ? -58.13 174.42 154 18 GLN A 57 ? ? -107.08 43.18 155 18 PHE A 60 ? ? -57.11 97.95 156 18 THR A 72 ? ? -61.15 -176.80 157 18 ARG A 73 ? ? -40.93 152.70 158 18 ARG A 74 ? ? -36.82 152.06 159 18 ASN A 83 ? ? -42.90 -70.63 160 18 ASN A 108 ? ? -88.45 -72.80 161 18 ASN A 115 ? ? -42.10 161.45 162 18 GLU A 123 ? ? -39.93 -38.04 163 19 TYR A 10 ? ? -128.30 -55.92 164 19 SER A 15 ? ? -173.00 127.13 165 19 ASP A 17 ? ? -172.77 121.05 166 19 VAL A 22 ? ? -96.24 46.02 167 19 SER A 54 ? ? -45.08 168.10 168 19 GLN A 57 ? ? -37.56 135.29 169 19 ILE A 61 ? ? -55.02 106.66 170 19 THR A 72 ? ? 40.35 29.89 171 20 PRO A 12 ? ? -69.84 -167.87 172 20 VAL A 14 ? ? -35.62 106.41 173 20 ASP A 26 ? ? -109.32 65.26 174 20 GLN A 57 ? ? -59.88 81.81 175 20 ILE A 61 ? ? -64.36 77.80 176 20 VAL A 107 ? ? -39.39 -26.88 177 20 SER A 114 ? ? -48.47 170.75 #