HEADER APOPTOSIS 14-FEB-07 2ED9 TITLE SOLUTION STRUCTURE OF THE THIRD FIBRONECTIN TYPE III DOMAIN OF HUMAN TITLE 2 NETRIN RECEPTOR DCC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN RECEPTOR DCC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD FN3 DOMAIN; COMPND 5 SYNONYM: TUMOR SUPPRESSOR PROTEIN DCC, COLORECTAL CANCER SUPPRESSOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCC; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060515-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TUMOR SUPPRESSOR PROTEIN DCC, COLORECTAL CANCER SUPPRESSOR, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2ED9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ED9 1 VERSN REVDAT 1 04-MAR-08 2ED9 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD FIBRONECTIN TYPE III DOMAIN JRNL TITL 2 OF HUMAN NETRIN RECEPTOR DCC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ED9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026522. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM SAMPLE U-15N,13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O' REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMNMRVIEW REMARK 210 5.0.4, KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 12 -179.06 -69.78 REMARK 500 1 VAL A 14 170.44 -58.51 REMARK 500 1 ALA A 30 141.06 -172.18 REMARK 500 1 ILE A 61 121.26 -35.38 REMARK 500 1 ARG A 73 146.20 -36.25 REMARK 500 1 ARG A 74 137.37 -34.41 REMARK 500 1 GLU A 76 -176.03 -65.74 REMARK 500 1 ASN A 83 -74.46 -48.01 REMARK 500 1 LEU A 85 42.02 -98.20 REMARK 500 2 ASN A 8 130.70 -173.25 REMARK 500 2 VAL A 22 33.71 -95.15 REMARK 500 2 VAL A 27 151.63 -41.55 REMARK 500 2 PRO A 32 -163.86 -69.81 REMARK 500 2 ILE A 61 102.40 -57.88 REMARK 500 2 ASN A 108 -65.53 -101.55 REMARK 500 3 SER A 5 141.55 -172.76 REMARK 500 3 ASN A 8 113.03 -173.06 REMARK 500 3 SER A 15 125.59 -173.26 REMARK 500 3 PHE A 60 118.02 -36.15 REMARK 500 3 ILE A 61 102.47 -59.22 REMARK 500 3 ASN A 83 -70.55 -39.76 REMARK 500 3 LEU A 85 36.15 -83.80 REMARK 500 4 TYR A 10 142.68 -172.79 REMARK 500 4 PRO A 12 -178.40 -69.71 REMARK 500 4 VAL A 22 52.00 -111.04 REMARK 500 4 VAL A 27 151.29 -34.71 REMARK 500 4 PRO A 32 -163.99 -69.70 REMARK 500 4 THR A 72 -73.49 -82.11 REMARK 500 4 ARG A 74 59.20 -93.90 REMARK 500 4 MET A 77 118.27 -164.65 REMARK 500 4 ASN A 83 -73.50 -48.24 REMARK 500 4 ASN A 108 -69.38 -91.96 REMARK 500 4 ASN A 115 141.11 -38.37 REMARK 500 5 SER A 5 133.44 -174.54 REMARK 500 5 VAL A 14 116.72 -172.02 REMARK 500 5 VAL A 22 46.42 -107.77 REMARK 500 5 ASP A 26 70.58 -116.30 REMARK 500 5 ASN A 58 57.51 -113.26 REMARK 500 5 ILE A 61 106.90 -54.10 REMARK 500 5 THR A 72 38.29 38.62 REMARK 500 5 GLU A 76 156.66 -46.57 REMARK 500 5 LEU A 85 35.22 -84.46 REMARK 500 5 VAL A 107 -18.57 -49.46 REMARK 500 5 ASN A 108 -75.13 -90.72 REMARK 500 5 ASN A 115 130.75 -37.48 REMARK 500 6 PRO A 12 -169.71 -69.77 REMARK 500 6 LEU A 85 43.70 -91.69 REMARK 500 7 SER A 5 119.37 -174.69 REMARK 500 7 SER A 6 -61.53 -124.68 REMARK 500 7 ASN A 8 117.33 -171.46 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001052.3 RELATED DB: TARGETDB DBREF 2ED9 A 8 124 UNP P43146 DCC_HUMAN 602 718 SEQADV 2ED9 GLY A 1 UNP P43146 EXPRESSION TAG SEQADV 2ED9 SER A 2 UNP P43146 EXPRESSION TAG SEQADV 2ED9 SER A 3 UNP P43146 EXPRESSION TAG SEQADV 2ED9 GLY A 4 UNP P43146 EXPRESSION TAG SEQADV 2ED9 SER A 5 UNP P43146 EXPRESSION TAG SEQADV 2ED9 SER A 6 UNP P43146 EXPRESSION TAG SEQADV 2ED9 GLY A 7 UNP P43146 EXPRESSION TAG SEQRES 1 A 124 GLY SER SER GLY SER SER GLY ASN ARG TYR GLY PRO GLY SEQRES 2 A 124 VAL SER THR ASP ASP ILE THR VAL VAL THR LEU SER ASP SEQRES 3 A 124 VAL PRO SER ALA PRO PRO GLN ASN VAL SER LEU GLU VAL SEQRES 4 A 124 VAL ASN SER ARG SER ILE LYS VAL SER TRP LEU PRO PRO SEQRES 5 A 124 PRO SER GLY THR GLN ASN GLY PHE ILE THR GLY TYR LYS SEQRES 6 A 124 ILE ARG HIS ARG LYS THR THR ARG ARG GLY GLU MET GLU SEQRES 7 A 124 THR LEU GLU PRO ASN ASN LEU TRP TYR LEU PHE THR GLY SEQRES 8 A 124 LEU GLU LYS GLY SER GLN TYR SER PHE GLN VAL SER ALA SEQRES 9 A 124 MET THR VAL ASN GLY THR GLY PRO PRO SER ASN TRP TYR SEQRES 10 A 124 THR ALA GLU THR PRO GLU ASN SHEET 1 A 3 LEU A 37 ASN A 41 0 SHEET 2 A 3 SER A 44 SER A 48 -1 O SER A 44 N ASN A 41 SHEET 3 A 3 TRP A 86 THR A 90 -1 O PHE A 89 N ILE A 45 SHEET 1 B 3 MET A 77 LEU A 80 0 SHEET 2 B 3 GLY A 63 LYS A 70 -1 N ILE A 66 O THR A 79 SHEET 3 B 3 VAL A 102 MET A 105 -1 O SER A 103 N LYS A 65 SHEET 1 C 4 MET A 77 LEU A 80 0 SHEET 2 C 4 GLY A 63 LYS A 70 -1 N ILE A 66 O THR A 79 SHEET 3 C 4 GLN A 97 PHE A 100 -1 O SER A 99 N ARG A 69 SHEET 4 C 4 TYR A 117 GLU A 120 -1 O ALA A 119 N TYR A 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1