data_2EDD # _entry.id 2EDD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EDD pdb_00002edd 10.2210/pdb2edd/pdb RCSB RCSB026524 ? ? WWPDB D_1000026524 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001052.5 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EDD _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Koshiba, S.' 2 'Tomizawa, T.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the fifth fibronectin type III domain of human Netrin receptor DCC' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Tomizawa, T.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Netrin receptor DCC' _entity.formula_weight 13232.646 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'fifth fn3 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tumor suppressor protein DCC, Colorectal cancer suppressor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSY TATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSY TATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001052.5 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PHE n 1 9 PRO n 1 10 THR n 1 11 SER n 1 12 VAL n 1 13 PRO n 1 14 ASP n 1 15 LEU n 1 16 SER n 1 17 THR n 1 18 PRO n 1 19 MET n 1 20 LEU n 1 21 PRO n 1 22 PRO n 1 23 VAL n 1 24 GLY n 1 25 VAL n 1 26 GLN n 1 27 ALA n 1 28 VAL n 1 29 ALA n 1 30 LEU n 1 31 THR n 1 32 HIS n 1 33 ASP n 1 34 ALA n 1 35 VAL n 1 36 ARG n 1 37 VAL n 1 38 SER n 1 39 TRP n 1 40 ALA n 1 41 ASP n 1 42 ASN n 1 43 SER n 1 44 VAL n 1 45 PRO n 1 46 LYS n 1 47 ASN n 1 48 GLN n 1 49 LYS n 1 50 THR n 1 51 SER n 1 52 GLU n 1 53 VAL n 1 54 ARG n 1 55 LEU n 1 56 TYR n 1 57 THR n 1 58 VAL n 1 59 ARG n 1 60 TRP n 1 61 ARG n 1 62 THR n 1 63 SER n 1 64 PHE n 1 65 SER n 1 66 ALA n 1 67 SER n 1 68 ALA n 1 69 LYS n 1 70 TYR n 1 71 LYS n 1 72 SER n 1 73 GLU n 1 74 ASP n 1 75 THR n 1 76 THR n 1 77 SER n 1 78 LEU n 1 79 SER n 1 80 TYR n 1 81 THR n 1 82 ALA n 1 83 THR n 1 84 GLY n 1 85 LEU n 1 86 LYS n 1 87 PRO n 1 88 ASN n 1 89 THR n 1 90 MET n 1 91 TYR n 1 92 GLU n 1 93 PHE n 1 94 SER n 1 95 VAL n 1 96 MET n 1 97 VAL n 1 98 THR n 1 99 LYS n 1 100 ASN n 1 101 ARG n 1 102 ARG n 1 103 SER n 1 104 SER n 1 105 THR n 1 106 TRP n 1 107 SER n 1 108 MET n 1 109 THR n 1 110 ALA n 1 111 HIS n 1 112 ALA n 1 113 THR n 1 114 THR n 1 115 TYR n 1 116 GLU n 1 117 ALA n 1 118 SER n 1 119 GLY n 1 120 PRO n 1 121 SER n 1 122 SER n 1 123 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene DCC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050905-23 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCC_HUMAN _struct_ref.pdbx_db_accession P43146 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGLKP NTMYEFSVMVTKNRRSSTWSMTAHATTYEA ; _struct_ref.pdbx_align_begin 833 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EDD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43146 _struct_ref_seq.db_align_beg 833 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 942 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 117 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EDD GLY A 1 ? UNP P43146 ? ? 'expression tag' 1 1 1 2EDD SER A 2 ? UNP P43146 ? ? 'expression tag' 2 2 1 2EDD SER A 3 ? UNP P43146 ? ? 'expression tag' 3 3 1 2EDD GLY A 4 ? UNP P43146 ? ? 'expression tag' 4 4 1 2EDD SER A 5 ? UNP P43146 ? ? 'expression tag' 5 5 1 2EDD SER A 6 ? UNP P43146 ? ? 'expression tag' 6 6 1 2EDD GLY A 7 ? UNP P43146 ? ? 'expression tag' 7 7 1 2EDD SER A 118 ? UNP P43146 ? ? 'expression tag' 118 8 1 2EDD GLY A 119 ? UNP P43146 ? ? 'expression tag' 119 9 1 2EDD PRO A 120 ? UNP P43146 ? ? 'expression tag' 120 10 1 2EDD SER A 121 ? UNP P43146 ? ? 'expression tag' 121 11 1 2EDD SER A 122 ? UNP P43146 ? ? 'expression tag' 122 12 1 2EDD GLY A 123 ? UNP P43146 ? ? 'expression tag' 123 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.2mM sample U-15N, 13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EDD _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EDD _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EDD _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMNMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EDD _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EDD _struct.title 'Solution structure of the fifth fibronectin type III domain of human Netrin receptor DCC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EDD _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text ;Tumor suppressor protein DCC, Colorectal cancer suppressor, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, APOPTOSIS ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 23 ? THR A 31 ? VAL A 23 THR A 31 A 2 ALA A 34 ? ALA A 40 ? ALA A 34 ALA A 40 A 3 SER A 79 ? THR A 83 ? SER A 79 THR A 83 B 1 GLU A 73 ? THR A 75 ? GLU A 73 THR A 75 B 2 TYR A 56 ? THR A 62 ? TYR A 56 THR A 62 B 3 MET A 90 ? VAL A 97 ? MET A 90 VAL A 97 B 4 ALA A 110 ? THR A 113 ? ALA A 110 THR A 113 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 28 ? N VAL A 28 O ARG A 36 ? O ARG A 36 A 2 3 N VAL A 37 ? N VAL A 37 O TYR A 80 ? O TYR A 80 B 1 2 O THR A 75 ? O THR A 75 N TYR A 56 ? N TYR A 56 B 2 3 N ARG A 61 ? N ARG A 61 O GLU A 92 ? O GLU A 92 B 3 4 N PHE A 93 ? N PHE A 93 O ALA A 110 ? O ALA A 110 # _database_PDB_matrix.entry_id 2EDD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EDD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 MET 90 90 90 MET MET A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 MET 96 96 96 MET MET A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 MET 108 108 108 MET MET A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 HIS 111 111 111 HIS HIS A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 GLY 123 123 123 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -84.27 47.43 2 1 THR A 10 ? ? -97.37 -62.93 3 1 SER A 16 ? ? -102.93 61.27 4 1 PRO A 18 ? ? -69.71 4.45 5 1 PRO A 22 ? ? -69.80 -179.06 6 1 PRO A 45 ? ? -69.75 -173.66 7 1 GLN A 48 ? ? -172.51 137.73 8 1 ARG A 54 ? ? -173.94 143.49 9 1 PHE A 64 ? ? 72.03 49.66 10 1 ASN A 100 ? ? 71.30 32.29 11 1 ALA A 112 ? ? -168.64 109.42 12 1 ALA A 117 ? ? -56.58 172.74 13 2 SER A 2 ? ? -122.30 -53.73 14 2 PRO A 18 ? ? -69.76 -176.30 15 2 MET A 19 ? ? -35.67 139.59 16 2 VAL A 25 ? ? -59.30 105.13 17 2 ASP A 33 ? ? -108.17 43.86 18 2 PRO A 45 ? ? -69.72 -174.83 19 2 SER A 51 ? ? -100.82 77.39 20 2 THR A 76 ? ? -89.00 36.17 21 2 LEU A 78 ? ? -87.51 32.18 22 2 ASN A 100 ? ? 70.76 47.21 23 2 MET A 108 ? ? -35.79 129.52 24 2 ALA A 112 ? ? -174.60 112.87 25 2 ALA A 117 ? ? -76.46 49.43 26 2 SER A 121 ? ? -67.17 92.44 27 2 SER A 122 ? ? -47.09 100.89 28 3 SER A 5 ? ? -173.80 124.79 29 3 PHE A 8 ? ? -171.36 139.53 30 3 PRO A 13 ? ? -69.72 88.33 31 3 PRO A 18 ? ? -69.80 4.95 32 3 PRO A 45 ? ? -69.79 -162.90 33 3 LYS A 46 ? ? -30.89 92.25 34 3 ASN A 47 ? ? 28.05 46.17 35 3 SER A 67 ? ? 34.23 50.58 36 3 THR A 76 ? ? -89.74 31.15 37 3 ASN A 100 ? ? 74.96 47.36 38 3 ALA A 112 ? ? -163.86 108.31 39 3 ALA A 117 ? ? -48.06 175.02 40 3 PRO A 120 ? ? -69.78 87.10 41 4 PHE A 8 ? ? -34.52 145.78 42 4 PRO A 18 ? ? -69.79 -171.40 43 4 MET A 19 ? ? -48.37 169.97 44 4 SER A 51 ? ? -108.11 75.17 45 4 THR A 62 ? ? -33.85 127.72 46 4 ALA A 66 ? ? -40.65 -72.11 47 4 THR A 76 ? ? -92.81 31.10 48 4 ASN A 100 ? ? 74.29 47.20 49 4 MET A 108 ? ? -34.74 151.62 50 5 SER A 6 ? ? -40.31 101.60 51 5 VAL A 12 ? ? -38.76 150.26 52 5 PRO A 18 ? ? -69.78 4.53 53 5 SER A 43 ? ? -85.36 43.43 54 5 ASN A 47 ? ? 38.10 38.32 55 5 THR A 62 ? ? -36.56 134.12 56 6 SER A 2 ? ? -92.29 54.00 57 6 SER A 3 ? ? 36.50 43.07 58 6 PRO A 9 ? ? -69.71 90.66 59 6 SER A 16 ? ? -47.51 174.07 60 6 PRO A 18 ? ? -69.80 -163.83 61 6 MET A 19 ? ? -37.52 154.18 62 6 PRO A 22 ? ? -69.72 -178.73 63 6 SER A 43 ? ? -84.90 37.24 64 6 VAL A 44 ? ? -173.62 124.84 65 6 ASN A 47 ? ? -76.68 46.07 66 6 THR A 62 ? ? -31.43 135.46 67 6 ALA A 66 ? ? -38.28 -70.25 68 6 ALA A 68 ? ? -174.43 125.69 69 6 SER A 121 ? ? -84.00 44.65 70 7 SER A 3 ? ? 37.30 51.09 71 7 PHE A 8 ? ? -173.31 146.22 72 7 THR A 10 ? ? -69.94 88.84 73 7 PRO A 13 ? ? -69.70 4.92 74 7 PRO A 18 ? ? -69.71 4.59 75 7 PRO A 22 ? ? -69.73 -178.87 76 7 VAL A 53 ? ? -51.19 172.32 77 7 THR A 76 ? ? -93.59 36.25 78 7 ALA A 112 ? ? -166.67 114.23 79 8 THR A 10 ? ? -57.25 80.27 80 8 PRO A 18 ? ? -69.80 -170.95 81 8 MET A 19 ? ? -48.10 167.10 82 8 PRO A 22 ? ? -69.69 -176.81 83 8 SER A 43 ? ? -84.42 41.61 84 8 THR A 62 ? ? -36.16 137.06 85 8 LEU A 78 ? ? -90.25 30.40 86 8 SER A 107 ? ? -66.65 -174.78 87 8 SER A 118 ? ? -101.18 76.80 88 9 SER A 3 ? ? -99.84 42.07 89 9 SER A 5 ? ? 70.48 41.68 90 9 PRO A 13 ? ? -69.75 90.32 91 9 ASP A 14 ? ? -43.65 162.63 92 9 LEU A 15 ? ? -49.13 178.05 93 9 PRO A 18 ? ? -69.73 4.36 94 9 PRO A 22 ? ? -69.72 -178.69 95 9 SER A 43 ? ? -90.89 35.67 96 9 VAL A 53 ? ? -38.34 158.62 97 9 THR A 62 ? ? -38.07 139.87 98 9 ALA A 66 ? ? -53.34 -75.21 99 9 ASN A 100 ? ? 74.29 31.62 100 9 ALA A 117 ? ? -45.20 162.39 101 10 SER A 2 ? ? 71.17 41.95 102 10 THR A 10 ? ? -34.94 125.85 103 10 THR A 17 ? ? -41.65 154.56 104 10 PRO A 18 ? ? -69.72 -165.13 105 10 MET A 19 ? ? -42.66 154.38 106 10 PRO A 22 ? ? -69.72 -174.74 107 10 ASN A 47 ? ? -76.36 49.78 108 10 PHE A 64 ? ? 70.15 34.42 109 10 THR A 76 ? ? -94.04 39.95 110 10 ALA A 112 ? ? -167.46 119.62 111 11 SER A 2 ? ? -50.66 176.51 112 11 SER A 3 ? ? -107.50 -60.21 113 11 SER A 6 ? ? -109.99 41.78 114 11 ASP A 14 ? ? -37.61 150.70 115 11 PRO A 18 ? ? -69.75 4.81 116 11 PRO A 22 ? ? -69.82 -170.98 117 11 PRO A 45 ? ? -69.81 -167.18 118 11 VAL A 53 ? ? -48.41 173.22 119 11 THR A 62 ? ? -39.25 135.88 120 11 SER A 67 ? ? -37.05 96.53 121 11 THR A 76 ? ? -79.85 41.25 122 11 ASN A 100 ? ? 72.87 37.15 123 11 MET A 108 ? ? -35.94 121.66 124 11 ALA A 112 ? ? -172.93 117.51 125 12 PRO A 9 ? ? -69.80 85.95 126 12 PRO A 13 ? ? -69.78 4.59 127 12 ASP A 14 ? ? -34.05 117.00 128 12 PRO A 18 ? ? -69.81 4.20 129 12 PRO A 22 ? ? -69.83 -177.79 130 12 SER A 43 ? ? -88.54 30.06 131 12 GLN A 48 ? ? -44.62 109.48 132 12 THR A 62 ? ? -39.16 140.99 133 12 PHE A 64 ? ? 72.14 39.96 134 12 ALA A 66 ? ? -79.04 -72.80 135 12 ALA A 112 ? ? -164.86 110.90 136 12 ALA A 117 ? ? -56.33 175.97 137 12 PRO A 120 ? ? -69.76 3.49 138 12 SER A 121 ? ? -33.62 122.97 139 12 SER A 122 ? ? -34.67 134.71 140 13 PRO A 18 ? ? -69.72 5.59 141 13 MET A 108 ? ? -38.86 142.49 142 13 ALA A 112 ? ? -163.81 105.14 143 13 PRO A 120 ? ? -69.81 3.24 144 13 SER A 121 ? ? -38.41 132.32 145 14 PRO A 9 ? ? -69.83 -172.78 146 14 SER A 11 ? ? -74.78 -76.14 147 14 PRO A 18 ? ? -69.79 4.10 148 14 ASN A 42 ? ? -129.84 -52.48 149 14 SER A 43 ? ? -35.98 -30.83 150 14 GLN A 48 ? ? -97.87 56.52 151 14 ASN A 88 ? ? 44.06 26.64 152 14 ASN A 100 ? ? 73.55 49.77 153 14 ALA A 112 ? ? -168.33 116.21 154 15 PRO A 9 ? ? -69.75 -178.44 155 15 LEU A 15 ? ? -173.01 139.35 156 15 PRO A 18 ? ? -69.80 -164.94 157 15 MET A 19 ? ? -36.03 143.21 158 15 VAL A 25 ? ? -56.28 108.58 159 15 SER A 43 ? ? -34.29 -33.05 160 15 GLN A 48 ? ? -162.24 110.86 161 15 VAL A 53 ? ? -34.91 133.69 162 15 PHE A 64 ? ? 71.86 54.80 163 15 ASN A 100 ? ? 71.72 36.72 164 15 MET A 108 ? ? -39.75 139.19 165 15 PRO A 120 ? ? -69.73 -177.23 166 16 PRO A 9 ? ? -69.80 1.84 167 16 THR A 10 ? ? -39.85 146.31 168 16 ASP A 14 ? ? -84.57 44.26 169 16 SER A 16 ? ? -87.65 43.01 170 16 PRO A 18 ? ? -69.73 4.43 171 16 LEU A 20 ? ? -160.54 112.55 172 16 PRO A 45 ? ? -69.78 -90.68 173 16 ASN A 47 ? ? 37.98 48.84 174 16 THR A 62 ? ? -38.51 131.41 175 16 SER A 104 ? ? -96.71 -82.98 176 16 ALA A 117 ? ? -38.01 155.78 177 16 PRO A 120 ? ? -69.79 -178.60 178 17 SER A 3 ? ? -124.57 -51.81 179 17 VAL A 12 ? ? -36.28 119.93 180 17 PRO A 18 ? ? -69.70 -167.07 181 17 MET A 19 ? ? -34.70 149.03 182 17 VAL A 25 ? ? -57.31 106.31 183 17 LYS A 46 ? ? -48.34 -75.08 184 17 GLN A 48 ? ? -171.73 142.17 185 17 LYS A 49 ? ? -49.34 176.51 186 17 SER A 67 ? ? -37.86 100.74 187 17 THR A 76 ? ? -96.57 35.94 188 17 ALA A 117 ? ? -36.89 150.33 189 18 PHE A 8 ? ? -166.79 110.70 190 18 PRO A 18 ? ? -69.78 4.48 191 18 PRO A 45 ? ? -69.71 -178.06 192 18 THR A 62 ? ? -39.55 145.67 193 18 LEU A 78 ? ? -88.29 31.22 194 18 ALA A 112 ? ? -163.44 106.47 195 18 ALA A 117 ? ? -40.49 155.62 196 19 PRO A 13 ? ? -69.80 -172.53 197 19 ASP A 14 ? ? -86.07 42.82 198 19 LEU A 15 ? ? 38.94 39.28 199 19 PRO A 18 ? ? -69.73 5.27 200 19 SER A 43 ? ? -35.96 -31.21 201 19 ASN A 47 ? ? -97.22 44.63 202 19 GLN A 48 ? ? -39.67 122.85 203 19 THR A 62 ? ? -34.60 135.26 204 19 PHE A 64 ? ? 71.13 46.41 205 19 LEU A 78 ? ? -90.34 30.48 206 19 SER A 104 ? ? -93.20 -82.12 207 20 SER A 6 ? ? -85.91 40.24 208 20 PHE A 8 ? ? -114.61 78.59 209 20 THR A 10 ? ? 35.24 53.74 210 20 PRO A 18 ? ? -69.76 82.18 211 20 VAL A 23 ? ? -134.99 -54.25 212 20 VAL A 25 ? ? -63.40 92.63 213 20 SER A 43 ? ? -33.76 -37.87 214 20 GLN A 48 ? ? -174.22 141.24 215 20 SER A 51 ? ? -98.20 41.29 216 20 SER A 67 ? ? -38.21 97.74 217 20 THR A 76 ? ? -93.61 30.96 218 20 LEU A 78 ? ? -85.68 34.37 219 20 ARG A 101 ? ? 39.86 38.55 220 20 SER A 122 ? ? -81.60 -71.46 #