data_2EDE # _entry.id 2EDE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EDE pdb_00002ede 10.2210/pdb2ede/pdb RCSB RCSB026525 ? ? WWPDB D_1000026525 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001052.6 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EDE _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Koshiba, S.' 2 'Tomizawa, T.' 3 'Yoneyama, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the sixth fibronectin type III domain of human Netrin receptor DCC' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Tomizawa, T.' 3 ? primary 'Yoneyama, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Netrin receptor DCC' _entity.formula_weight 12510.242 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'sixth fn3 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tumor suppressor protein DCC, Colorectal cancer suppressor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDT MYYFRIQARNSKGVGPLSDPILFRTLKVSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDT MYYFRIQARNSKGVGPLSDPILFRTLKVSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001052.6 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 THR n 1 10 SER n 1 11 ALA n 1 12 PRO n 1 13 LYS n 1 14 ASP n 1 15 LEU n 1 16 THR n 1 17 VAL n 1 18 ILE n 1 19 THR n 1 20 ARG n 1 21 GLU n 1 22 GLY n 1 23 LYS n 1 24 PRO n 1 25 ARG n 1 26 ALA n 1 27 VAL n 1 28 ILE n 1 29 VAL n 1 30 SER n 1 31 TRP n 1 32 GLN n 1 33 PRO n 1 34 PRO n 1 35 LEU n 1 36 GLU n 1 37 ALA n 1 38 ASN n 1 39 GLY n 1 40 LYS n 1 41 ILE n 1 42 THR n 1 43 ALA n 1 44 TYR n 1 45 ILE n 1 46 LEU n 1 47 PHE n 1 48 TYR n 1 49 THR n 1 50 LEU n 1 51 ASP n 1 52 LYS n 1 53 ASN n 1 54 ILE n 1 55 PRO n 1 56 ILE n 1 57 ASP n 1 58 ASP n 1 59 TRP n 1 60 ILE n 1 61 MET n 1 62 GLU n 1 63 THR n 1 64 ILE n 1 65 SER n 1 66 GLY n 1 67 ASP n 1 68 ARG n 1 69 LEU n 1 70 THR n 1 71 HIS n 1 72 GLN n 1 73 ILE n 1 74 MET n 1 75 ASP n 1 76 LEU n 1 77 ASN n 1 78 LEU n 1 79 ASP n 1 80 THR n 1 81 MET n 1 82 TYR n 1 83 TYR n 1 84 PHE n 1 85 ARG n 1 86 ILE n 1 87 GLN n 1 88 ALA n 1 89 ARG n 1 90 ASN n 1 91 SER n 1 92 LYS n 1 93 GLY n 1 94 VAL n 1 95 GLY n 1 96 PRO n 1 97 LEU n 1 98 SER n 1 99 ASP n 1 100 PRO n 1 101 ILE n 1 102 LEU n 1 103 PHE n 1 104 ARG n 1 105 THR n 1 106 LEU n 1 107 LYS n 1 108 VAL n 1 109 SER n 1 110 GLY n 1 111 PRO n 1 112 SER n 1 113 SER n 1 114 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene DCC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050905-24 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCC_HUMAN _struct_ref.pdbx_db_accession P43146 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PTSAPKDFTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQ ARNSKGVGPLSDPILFRTLKV ; _struct_ref.pdbx_align_begin 944 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EDE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 108 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43146 _struct_ref_seq.db_align_beg 944 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1044 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EDE GLY A 1 ? UNP P43146 ? ? 'expression tag' 1 1 1 2EDE SER A 2 ? UNP P43146 ? ? 'expression tag' 2 2 1 2EDE SER A 3 ? UNP P43146 ? ? 'expression tag' 3 3 1 2EDE GLY A 4 ? UNP P43146 ? ? 'expression tag' 4 4 1 2EDE SER A 5 ? UNP P43146 ? ? 'expression tag' 5 5 1 2EDE SER A 6 ? UNP P43146 ? ? 'expression tag' 6 6 1 2EDE GLY A 7 ? UNP P43146 ? ? 'expression tag' 7 7 1 2EDE LEU A 15 ? UNP P43146 PHE 951 'engineered mutation' 15 8 1 2EDE SER A 109 ? UNP P43146 ? ? 'expression tag' 109 9 1 2EDE GLY A 110 ? UNP P43146 ? ? 'expression tag' 110 10 1 2EDE PRO A 111 ? UNP P43146 ? ? 'expression tag' 111 11 1 2EDE SER A 112 ? UNP P43146 ? ? 'expression tag' 112 12 1 2EDE SER A 113 ? UNP P43146 ? ? 'expression tag' 113 13 1 2EDE GLY A 114 ? UNP P43146 ? ? 'expression tag' 114 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.3mM sample U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EDE _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EDE _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EDE _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMNMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EDE _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EDE _struct.title 'Solution structure of the sixth fibronectin type III domain of human Netrin receptor DCC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EDE _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text ;Tumor suppressor protein DCC, Colorectal cancer suppressor, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, APOPTOSIS ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 13 ? THR A 19 ? LYS A 13 THR A 19 A 2 VAL A 27 ? GLN A 32 ? VAL A 27 GLN A 32 A 3 THR A 70 ? ILE A 73 ? THR A 70 ILE A 73 B 1 ILE A 60 ? SER A 65 ? ILE A 60 SER A 65 B 2 ALA A 43 ? THR A 49 ? ALA A 43 THR A 49 B 3 MET A 81 ? ARG A 89 ? MET A 81 ARG A 89 B 4 ILE A 101 ? ARG A 104 ? ILE A 101 ARG A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 18 ? N ILE A 18 O ILE A 28 ? O ILE A 28 A 2 3 N VAL A 29 ? N VAL A 29 O HIS A 71 ? O HIS A 71 B 1 2 O GLU A 62 ? O GLU A 62 N LEU A 46 ? N LEU A 46 B 2 3 N PHE A 47 ? N PHE A 47 O ARG A 85 ? O ARG A 85 B 3 4 N PHE A 84 ? N PHE A 84 O ILE A 101 ? O ILE A 101 # _database_PDB_matrix.entry_id 2EDE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EDE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 TRP 59 59 59 TRP TRP A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLY 114 114 114 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -99.55 40.87 2 1 SER A 6 ? ? -104.32 -60.16 3 1 LEU A 15 ? ? -69.27 97.63 4 1 LYS A 40 ? ? -33.79 137.29 5 1 ILE A 56 ? ? -38.23 -26.62 6 1 TRP A 59 ? ? -57.82 172.46 7 1 ASP A 75 ? ? 72.76 52.64 8 1 LYS A 92 ? ? -81.59 -71.58 9 1 PRO A 96 ? ? -69.76 -177.42 10 1 LEU A 106 ? ? -46.65 167.59 11 1 PRO A 111 ? ? -69.76 2.68 12 1 SER A 112 ? ? 74.51 48.60 13 2 SER A 5 ? ? -39.49 124.63 14 2 GLU A 36 ? ? -87.25 44.62 15 2 ASN A 38 ? ? 41.23 29.66 16 2 ILE A 56 ? ? -39.89 -25.12 17 2 TRP A 59 ? ? -57.58 -179.75 18 2 ASP A 75 ? ? 70.99 49.81 19 2 SER A 91 ? ? -38.62 -31.46 20 2 PRO A 96 ? ? -69.79 -163.22 21 2 PRO A 111 ? ? -69.76 86.87 22 3 GLU A 36 ? ? -84.34 32.21 23 3 ASN A 38 ? ? 49.75 25.75 24 3 LYS A 40 ? ? -34.98 109.40 25 3 ILE A 56 ? ? -38.94 -25.69 26 3 TRP A 59 ? ? -58.07 179.82 27 3 ASP A 75 ? ? 72.28 52.84 28 3 SER A 91 ? ? -39.93 -29.84 29 3 PRO A 96 ? ? -69.72 -163.20 30 3 LEU A 106 ? ? -49.87 165.88 31 4 GLU A 36 ? ? -84.95 40.05 32 4 ASN A 38 ? ? 35.52 48.15 33 4 ILE A 56 ? ? -39.80 -27.76 34 4 TRP A 59 ? ? -54.20 176.56 35 4 SER A 91 ? ? -37.93 -32.20 36 4 PRO A 96 ? ? -69.79 -170.00 37 4 THR A 105 ? ? -59.42 171.87 38 4 PRO A 111 ? ? -69.69 86.82 39 4 SER A 112 ? ? -84.47 42.21 40 5 LEU A 15 ? ? -69.84 98.26 41 5 TRP A 31 ? ? -174.76 -177.78 42 5 GLU A 36 ? ? -84.41 30.03 43 5 ILE A 56 ? ? -39.80 -26.96 44 5 TRP A 59 ? ? -56.63 174.47 45 5 ASP A 75 ? ? 73.25 51.26 46 5 SER A 91 ? ? -38.17 -32.86 47 5 THR A 105 ? ? -56.15 171.68 48 6 GLU A 36 ? ? -91.13 41.08 49 6 ILE A 56 ? ? -38.24 -26.69 50 6 TRP A 59 ? ? -56.70 174.71 51 6 SER A 91 ? ? -38.48 -29.93 52 6 LYS A 92 ? ? -73.97 -70.18 53 6 PRO A 96 ? ? -69.77 -168.93 54 6 LEU A 106 ? ? -53.72 -179.83 55 7 TRP A 31 ? ? -174.65 -175.10 56 7 ASN A 38 ? ? 36.49 41.88 57 7 LYS A 40 ? ? -34.14 137.43 58 7 ASN A 53 ? ? -38.22 -28.69 59 7 ILE A 56 ? ? -38.52 -26.24 60 7 TRP A 59 ? ? -57.45 174.82 61 7 ASP A 75 ? ? 72.22 49.83 62 7 ASP A 79 ? ? 38.30 35.74 63 7 SER A 91 ? ? -38.79 -31.26 64 7 LYS A 92 ? ? -74.87 -70.85 65 7 VAL A 108 ? ? -82.72 45.27 66 8 TRP A 31 ? ? -175.45 -176.48 67 8 GLU A 36 ? ? -83.68 40.69 68 8 LYS A 40 ? ? -34.22 115.65 69 8 ILE A 56 ? ? -38.31 -26.30 70 8 TRP A 59 ? ? -57.74 176.34 71 8 LYS A 92 ? ? -83.02 -75.16 72 8 PRO A 96 ? ? -69.74 -173.10 73 8 LEU A 106 ? ? -57.92 173.96 74 8 PRO A 111 ? ? -69.73 88.54 75 9 SER A 6 ? ? -33.22 145.96 76 9 GLU A 36 ? ? -82.36 39.52 77 9 LYS A 40 ? ? -40.90 108.79 78 9 TRP A 59 ? ? -53.28 175.80 79 9 SER A 91 ? ? -47.44 -19.41 80 9 LYS A 92 ? ? -88.15 -74.90 81 9 PRO A 96 ? ? -69.71 -177.31 82 10 SER A 3 ? ? -68.13 94.24 83 10 SER A 6 ? ? -133.94 -70.39 84 10 GLU A 36 ? ? -81.39 47.13 85 10 ASN A 38 ? ? 39.27 39.86 86 10 LYS A 52 ? ? -37.67 -26.28 87 10 ILE A 56 ? ? -38.60 -25.84 88 10 TRP A 59 ? ? -55.29 173.00 89 10 PRO A 96 ? ? -69.75 -163.15 90 10 VAL A 108 ? ? -80.43 47.88 91 11 SER A 2 ? ? -84.88 42.39 92 11 ARG A 20 ? ? -52.43 109.48 93 11 GLU A 36 ? ? -82.65 40.20 94 11 ILE A 41 ? ? -47.27 150.42 95 11 ILE A 56 ? ? -38.08 -26.65 96 11 TRP A 59 ? ? -54.36 -174.55 97 11 ASP A 75 ? ? 71.55 54.37 98 11 ASP A 79 ? ? 73.19 34.10 99 11 SER A 91 ? ? -37.85 -32.20 100 11 LYS A 92 ? ? -75.01 -71.26 101 11 PRO A 100 ? ? -69.74 85.76 102 11 SER A 112 ? ? -68.03 93.64 103 12 GLU A 36 ? ? -79.60 45.73 104 12 ASN A 38 ? ? 46.41 29.86 105 12 ILE A 56 ? ? -39.58 -26.88 106 12 TRP A 59 ? ? -57.08 -177.92 107 12 SER A 91 ? ? -49.59 -17.67 108 12 LYS A 92 ? ? -88.97 -70.67 109 12 PRO A 96 ? ? -69.79 -163.23 110 12 SER A 112 ? ? -38.38 122.05 111 13 TRP A 31 ? ? -175.06 -176.81 112 13 LYS A 52 ? ? -38.52 -25.73 113 13 TRP A 59 ? ? -53.61 170.54 114 13 ASP A 75 ? ? 70.86 51.93 115 13 SER A 91 ? ? -39.34 -25.92 116 13 PRO A 96 ? ? -69.69 -179.36 117 13 PRO A 100 ? ? -69.70 96.68 118 13 PRO A 111 ? ? -69.74 86.53 119 14 SER A 5 ? ? -42.04 106.29 120 14 SER A 6 ? ? -107.59 -61.78 121 14 TRP A 31 ? ? -175.18 -176.11 122 14 ILE A 56 ? ? -37.08 -28.11 123 14 TRP A 59 ? ? -57.37 170.27 124 14 ASP A 75 ? ? 70.00 53.66 125 14 SER A 91 ? ? -38.26 -30.70 126 14 LYS A 92 ? ? -76.14 -71.63 127 14 PRO A 96 ? ? -69.75 -178.53 128 14 VAL A 108 ? ? -81.32 47.48 129 14 SER A 112 ? ? -48.38 106.29 130 15 GLU A 36 ? ? -90.37 45.75 131 15 ILE A 56 ? ? -37.21 -28.39 132 15 TRP A 59 ? ? -55.94 177.34 133 15 ASN A 77 ? ? -48.13 162.71 134 15 PRO A 96 ? ? -69.73 -169.69 135 15 SER A 109 ? ? -95.90 -60.17 136 15 SER A 113 ? ? -37.56 106.36 137 16 SER A 3 ? ? -88.42 44.74 138 16 TRP A 31 ? ? -175.31 -176.82 139 16 GLU A 36 ? ? -94.27 43.66 140 16 ILE A 56 ? ? -37.65 -27.55 141 16 TRP A 59 ? ? -57.56 -176.70 142 16 ASN A 77 ? ? -45.65 150.02 143 16 PRO A 96 ? ? -69.79 -171.55 144 16 VAL A 108 ? ? -78.49 49.86 145 17 ARG A 20 ? ? -34.24 124.11 146 17 GLU A 36 ? ? -91.18 40.40 147 17 LYS A 40 ? ? -35.23 115.72 148 17 ILE A 56 ? ? -39.03 -25.78 149 17 SER A 65 ? ? -49.56 172.39 150 17 ASP A 79 ? ? 45.90 29.55 151 17 SER A 91 ? ? -37.76 -33.59 152 17 SER A 109 ? ? -106.76 73.72 153 17 SER A 112 ? ? 38.19 44.34 154 18 TRP A 31 ? ? -173.37 -175.57 155 18 ASN A 38 ? ? 34.06 41.90 156 18 LYS A 40 ? ? -34.01 110.62 157 18 ILE A 56 ? ? -38.30 -26.31 158 18 TRP A 59 ? ? -58.18 176.39 159 18 SER A 91 ? ? -37.71 -29.80 160 18 PRO A 96 ? ? -69.72 -163.12 161 19 TRP A 31 ? ? -175.19 -175.50 162 19 ALA A 37 ? ? -39.72 -25.99 163 19 LYS A 40 ? ? -33.92 124.72 164 19 TRP A 59 ? ? -53.38 -177.47 165 19 ASP A 75 ? ? 71.34 46.25 166 19 ASN A 77 ? ? -55.93 177.69 167 19 PRO A 96 ? ? -69.70 -170.17 168 19 VAL A 108 ? ? -96.78 30.34 169 19 SER A 113 ? ? 38.97 42.14 170 20 GLU A 36 ? ? -86.76 42.97 171 20 LYS A 52 ? ? -37.94 -26.06 172 20 TRP A 59 ? ? -50.83 175.52 173 20 SER A 91 ? ? -38.37 -31.28 174 20 PRO A 96 ? ? -69.75 -179.42 175 20 LEU A 106 ? ? -54.16 170.03 176 20 SER A 112 ? ? -63.69 -175.02 177 20 SER A 113 ? ? 36.22 41.37 #