HEADER APOPTOSIS 14-FEB-07 2EDE TITLE SOLUTION STRUCTURE OF THE SIXTH FIBRONECTIN TYPE III DOMAIN OF HUMAN TITLE 2 NETRIN RECEPTOR DCC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN RECEPTOR DCC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SIXTH FN3 DOMAIN; COMPND 5 SYNONYM: TUMOR SUPPRESSOR PROTEIN DCC, COLORECTAL CANCER SUPPRESSOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCC; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050905-24; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TUMOR SUPPRESSOR PROTEIN DCC, COLORECTAL CANCER SUPPRESSOR, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,T.TOMIZAWA,M.YONEYAMA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 10-NOV-21 2EDE 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EDE 1 VERSN REVDAT 1 04-MAR-08 2EDE 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,T.TOMIZAWA,M.YONEYAMA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SIXTH FIBRONECTIN TYPE III DOMAIN JRNL TITL 2 OF HUMAN NETRIN RECEPTOR DCC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EDE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026525. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM SAMPLE U-15N,13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMNMRVIEW REMARK 210 5.0.4, KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 40.87 -99.55 REMARK 500 1 SER A 6 -60.16 -104.32 REMARK 500 1 LEU A 15 97.63 -69.27 REMARK 500 1 LYS A 40 137.29 -33.79 REMARK 500 1 ILE A 56 -26.62 -38.23 REMARK 500 1 TRP A 59 172.46 -57.82 REMARK 500 1 ASP A 75 52.64 72.76 REMARK 500 1 LYS A 92 -71.58 -81.59 REMARK 500 1 PRO A 96 -177.42 -69.76 REMARK 500 1 LEU A 106 167.59 -46.65 REMARK 500 1 PRO A 111 2.68 -69.76 REMARK 500 1 SER A 112 48.60 74.51 REMARK 500 2 SER A 5 124.63 -39.49 REMARK 500 2 GLU A 36 44.62 -87.25 REMARK 500 2 ASN A 38 29.66 41.23 REMARK 500 2 ILE A 56 -25.12 -39.89 REMARK 500 2 TRP A 59 -179.75 -57.58 REMARK 500 2 ASP A 75 49.81 70.99 REMARK 500 2 SER A 91 -31.46 -38.62 REMARK 500 2 PRO A 96 -163.22 -69.79 REMARK 500 2 PRO A 111 86.87 -69.76 REMARK 500 3 GLU A 36 32.21 -84.34 REMARK 500 3 ASN A 38 25.75 49.75 REMARK 500 3 LYS A 40 109.40 -34.98 REMARK 500 3 ILE A 56 -25.69 -38.94 REMARK 500 3 TRP A 59 179.82 -58.07 REMARK 500 3 ASP A 75 52.84 72.28 REMARK 500 3 SER A 91 -29.84 -39.93 REMARK 500 3 PRO A 96 -163.20 -69.72 REMARK 500 3 LEU A 106 165.88 -49.87 REMARK 500 4 GLU A 36 40.05 -84.95 REMARK 500 4 ASN A 38 48.15 35.52 REMARK 500 4 ILE A 56 -27.76 -39.80 REMARK 500 4 TRP A 59 176.56 -54.20 REMARK 500 4 SER A 91 -32.20 -37.93 REMARK 500 4 PRO A 96 -170.00 -69.79 REMARK 500 4 THR A 105 171.87 -59.42 REMARK 500 4 PRO A 111 86.82 -69.69 REMARK 500 4 SER A 112 42.21 -84.47 REMARK 500 5 LEU A 15 98.26 -69.84 REMARK 500 5 TRP A 31 -177.78 -174.76 REMARK 500 5 GLU A 36 30.03 -84.41 REMARK 500 5 ILE A 56 -26.96 -39.80 REMARK 500 5 TRP A 59 174.47 -56.63 REMARK 500 5 ASP A 75 51.26 73.25 REMARK 500 5 SER A 91 -32.86 -38.17 REMARK 500 5 THR A 105 171.68 -56.15 REMARK 500 6 GLU A 36 41.08 -91.13 REMARK 500 6 ILE A 56 -26.69 -38.24 REMARK 500 6 TRP A 59 174.71 -56.70 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001052.6 RELATED DB: TARGETDB DBREF 2EDE A 8 108 UNP P43146 DCC_HUMAN 944 1044 SEQADV 2EDE GLY A 1 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 2 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 3 UNP P43146 EXPRESSION TAG SEQADV 2EDE GLY A 4 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 5 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 6 UNP P43146 EXPRESSION TAG SEQADV 2EDE GLY A 7 UNP P43146 EXPRESSION TAG SEQADV 2EDE LEU A 15 UNP P43146 PHE 951 ENGINEERED MUTATION SEQADV 2EDE SER A 109 UNP P43146 EXPRESSION TAG SEQADV 2EDE GLY A 110 UNP P43146 EXPRESSION TAG SEQADV 2EDE PRO A 111 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 112 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 113 UNP P43146 EXPRESSION TAG SEQADV 2EDE GLY A 114 UNP P43146 EXPRESSION TAG SEQRES 1 A 114 GLY SER SER GLY SER SER GLY PRO THR SER ALA PRO LYS SEQRES 2 A 114 ASP LEU THR VAL ILE THR ARG GLU GLY LYS PRO ARG ALA SEQRES 3 A 114 VAL ILE VAL SER TRP GLN PRO PRO LEU GLU ALA ASN GLY SEQRES 4 A 114 LYS ILE THR ALA TYR ILE LEU PHE TYR THR LEU ASP LYS SEQRES 5 A 114 ASN ILE PRO ILE ASP ASP TRP ILE MET GLU THR ILE SER SEQRES 6 A 114 GLY ASP ARG LEU THR HIS GLN ILE MET ASP LEU ASN LEU SEQRES 7 A 114 ASP THR MET TYR TYR PHE ARG ILE GLN ALA ARG ASN SER SEQRES 8 A 114 LYS GLY VAL GLY PRO LEU SER ASP PRO ILE LEU PHE ARG SEQRES 9 A 114 THR LEU LYS VAL SER GLY PRO SER SER GLY SHEET 1 A 3 LYS A 13 THR A 19 0 SHEET 2 A 3 VAL A 27 GLN A 32 -1 O ILE A 28 N ILE A 18 SHEET 3 A 3 THR A 70 ILE A 73 -1 O HIS A 71 N VAL A 29 SHEET 1 B 4 ILE A 60 SER A 65 0 SHEET 2 B 4 ALA A 43 THR A 49 -1 N LEU A 46 O GLU A 62 SHEET 3 B 4 MET A 81 ARG A 89 -1 O ARG A 85 N PHE A 47 SHEET 4 B 4 ILE A 101 ARG A 104 -1 O ILE A 101 N PHE A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1