HEADER BIOSYNTHETIC PROTEIN 14-FEB-07 2EDG TITLE SOLUTION STRUCTURE OF THE GCV_H DOMAIN FROM MOUSE GLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE CLEAVAGE SYSTEM H PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GCV_H; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GCSH; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060313-07; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS BARREL-SANDWICH HYBRID, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ENDO,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EDG 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EDG 1 VERSN REVDAT 1 14-AUG-07 2EDG 0 JRNL AUTH H.ENDO,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE GCV_H DOMAIN FROM MOUSE GLYCINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EDG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026527. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.79MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 45 -175.12 -69.85 REMARK 500 1 LYS A 64 -71.99 -97.69 REMARK 500 1 VAL A 91 -30.94 -35.64 REMARK 500 1 GLU A 97 -70.03 -35.90 REMARK 500 1 PRO A 109 0.55 -69.69 REMARK 500 2 PRO A 45 -174.24 -69.79 REMARK 500 2 GLU A 97 -71.79 -39.10 REMARK 500 3 VAL A 47 133.47 -38.61 REMARK 500 3 ASN A 92 -73.00 -79.69 REMARK 500 3 PRO A 109 2.34 -69.81 REMARK 500 3 LEU A 115 158.57 -40.49 REMARK 500 4 GLN A 54 52.47 36.71 REMARK 500 4 ASN A 92 -71.50 -77.41 REMARK 500 4 LEU A 101 -73.06 -37.25 REMARK 500 4 PRO A 109 0.25 -69.80 REMARK 500 4 LEU A 115 174.02 -54.58 REMARK 500 5 LYS A 13 45.01 -89.16 REMARK 500 5 HIS A 14 33.49 36.18 REMARK 500 5 LYS A 64 -59.26 -121.96 REMARK 500 5 VAL A 91 -32.19 -34.81 REMARK 500 6 PRO A 45 -171.05 -69.72 REMARK 500 6 LYS A 64 -69.55 -96.04 REMARK 500 6 LEU A 101 -74.27 -40.06 REMARK 500 6 PRO A 109 1.55 -69.75 REMARK 500 6 LEU A 115 153.57 -44.55 REMARK 500 7 SER A 2 82.98 -67.41 REMARK 500 7 SER A 5 42.45 35.90 REMARK 500 7 LYS A 13 30.68 -89.32 REMARK 500 7 PRO A 45 -175.93 -69.78 REMARK 500 7 LYS A 64 -68.77 -98.43 REMARK 500 7 VAL A 91 -25.99 -38.60 REMARK 500 7 GLU A 97 -70.81 -114.91 REMARK 500 8 PRO A 45 -176.99 -69.74 REMARK 500 8 LYS A 64 -69.50 -91.37 REMARK 500 8 VAL A 77 105.52 -58.75 REMARK 500 8 ASN A 92 -72.48 -79.73 REMARK 500 8 GLU A 97 -71.66 -37.86 REMARK 500 8 LEU A 101 -73.81 -37.13 REMARK 500 9 SER A 6 127.17 -172.87 REMARK 500 9 LYS A 13 32.42 -99.43 REMARK 500 9 VAL A 47 150.26 -40.45 REMARK 500 9 GLN A 54 50.39 38.55 REMARK 500 9 LYS A 64 -70.05 -83.46 REMARK 500 9 ASN A 92 -70.68 -61.38 REMARK 500 9 LYS A 126 -39.00 -34.54 REMARK 500 10 LYS A 13 45.35 -90.96 REMARK 500 10 HIS A 14 37.42 36.27 REMARK 500 10 PRO A 45 -178.59 -69.77 REMARK 500 10 VAL A 47 140.66 -34.91 REMARK 500 10 GLU A 56 108.90 -58.77 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMI002016772.1 RELATED DB: TARGETDB DBREF 2EDG A 8 130 UNP Q91WK5 GCSH_MOUSE 48 170 SEQADV 2EDG GLY A 1 UNP Q91WK5 CLONING ARTIFACT SEQADV 2EDG SER A 2 UNP Q91WK5 CLONING ARTIFACT SEQADV 2EDG SER A 3 UNP Q91WK5 CLONING ARTIFACT SEQADV 2EDG GLY A 4 UNP Q91WK5 CLONING ARTIFACT SEQADV 2EDG SER A 5 UNP Q91WK5 CLONING ARTIFACT SEQADV 2EDG SER A 6 UNP Q91WK5 CLONING ARTIFACT SEQADV 2EDG GLY A 7 UNP Q91WK5 CLONING ARTIFACT SEQRES 1 A 130 GLY SER SER GLY SER SER GLY ARG LYS PHE THR GLU LYS SEQRES 2 A 130 HIS GLU TRP ILE THR THR GLU GLU GLY ILE GLY THR VAL SEQRES 3 A 130 GLY ILE SER ASN PHE ALA GLN GLU ALA LEU GLY ASP VAL SEQRES 4 A 130 VAL TYR CYS SER LEU PRO GLU VAL GLY THR LYS LEU LYS SEQRES 5 A 130 LYS GLN GLU GLU PHE GLY ALA LEU GLU SER VAL LYS ALA SEQRES 6 A 130 ALA SER GLU LEU TYR SER PRO LEU SER GLY GLU VAL THR SEQRES 7 A 130 GLU VAL ASN GLU ALA LEU ALA GLU ASN PRO GLY LEU VAL SEQRES 8 A 130 ASN LYS SER CYS TYR GLU ASP GLY TRP LEU ILE LYS MET SEQRES 9 A 130 THR LEU SER ASP PRO SER GLU LEU ASP GLU LEU MET SER SEQRES 10 A 130 GLU GLU ALA TYR GLU LYS TYR VAL LYS SER ILE GLU GLU HELIX 1 1 SER A 29 GLY A 37 1 9 HELIX 2 2 GLY A 89 SER A 94 1 6 HELIX 3 3 SER A 110 GLU A 114 5 5 HELIX 4 4 GLU A 118 SER A 127 1 10 SHEET 1 A 7 LYS A 50 LEU A 51 0 SHEET 2 A 7 GLY A 75 VAL A 80 -1 N GLY A 75 O LEU A 51 SHEET 3 A 7 ILE A 102 THR A 105 -1 O LYS A 103 N THR A 78 SHEET 4 A 7 ILE A 23 ILE A 28 -1 N GLY A 24 O MET A 104 SHEET 5 A 7 GLU A 15 GLU A 20 -1 N TRP A 16 O GLY A 27 SHEET 6 A 7 LYS A 9 PHE A 10 -1 N LYS A 9 O ILE A 17 SHEET 7 A 7 MET A 116 SER A 117 -1 O MET A 116 N PHE A 10 SHEET 1 B 3 VAL A 39 SER A 43 0 SHEET 2 B 3 GLU A 56 SER A 62 -1 O ALA A 59 N SER A 43 SHEET 3 B 3 ALA A 66 TYR A 70 -1 O SER A 67 N LEU A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1