HEADER LIGASE 14-FEB-07 2EDI TITLE SOLUTION STRUCTURE OF THE UQ_CON DOMAIN FROM HUMAN NEDD8-CONJUGATING TITLE 2 ENZYME NCE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD8-CONJUGATING ENZYME UBE2F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UQ_CON; COMPND 5 SYNONYM: UBIQUITIN-CONJUGATING ENZYME E2 F, NEDD8 PROTEIN LIGASE COMPND 6 UBE2F, NEDD8 CARRIER PROTEIN UBE2F, NEDD8-CONJUGATING ENZYME 2, COMPND 7 NEDD8-CONJUGATING ENZYME NCE2; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCE2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050314-14; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS NON-PROLINE CIS PEPTIDE BOND, E2 CONJUGATING ENZYME, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ENDO,K.IZUMI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EDI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EDI 1 VERSN REVDAT 1 14-AUG-07 2EDI 0 JRNL AUTH H.ENDO,K.IZUMI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE UQ_CON DOMAIN FROM HUMAN JRNL TITL 2 NEDD8-CONJUGATING ENZYME NCE2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EDI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026529. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.62MM 13C,15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT ; 0.02% NAN3; 10% REMARK 210 D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 47.54 71.81 REMARK 500 1 SER A 6 148.68 -172.56 REMARK 500 1 ARG A 11 140.84 -34.82 REMARK 500 1 SER A 13 -74.35 -133.48 REMARK 500 1 VAL A 23 -39.35 -35.78 REMARK 500 1 TYR A 58 37.12 -87.73 REMARK 500 1 PRO A 70 -178.04 -69.75 REMARK 500 1 TYR A 73 138.67 -31.10 REMARK 500 1 THR A 92 171.58 -47.16 REMARK 500 1 HIS A 105 40.62 34.85 REMARK 500 1 SER A 106 102.03 -34.69 REMARK 500 1 PRO A 114 1.27 -69.72 REMARK 500 1 THR A 130 -64.31 -127.85 REMARK 500 1 LEU A 132 -34.43 -34.02 REMARK 500 1 LEU A 133 93.41 -35.05 REMARK 500 1 ASP A 137 52.38 -119.87 REMARK 500 1 TYR A 161 -19.27 -48.75 REMARK 500 1 ILE A 162 -72.67 -82.26 REMARK 500 2 PRO A 70 -164.93 -69.75 REMARK 500 2 TYR A 73 138.13 -29.72 REMARK 500 2 THR A 130 -61.17 -132.56 REMARK 500 2 LEU A 132 46.68 -75.58 REMARK 500 2 LEU A 133 74.98 -112.82 REMARK 500 2 ASP A 136 -55.89 -124.31 REMARK 500 2 PRO A 138 -173.08 -69.77 REMARK 500 2 TYR A 161 -33.41 -36.71 REMARK 500 3 LEU A 19 -63.81 -91.18 REMARK 500 3 TYR A 58 33.66 -89.43 REMARK 500 3 PRO A 70 -175.31 -69.75 REMARK 500 3 TYR A 73 139.82 -32.08 REMARK 500 3 TRP A 87 31.93 -87.08 REMARK 500 3 THR A 92 172.05 -51.45 REMARK 500 3 ARG A 103 138.24 -34.51 REMARK 500 3 SER A 106 128.65 -170.28 REMARK 500 3 PRO A 114 3.87 -69.73 REMARK 500 3 THR A 130 -72.56 -129.90 REMARK 500 3 LEU A 132 -33.39 -38.32 REMARK 500 3 LEU A 133 94.32 -42.90 REMARK 500 4 SER A 3 42.58 39.13 REMARK 500 4 VAL A 23 -35.74 -36.14 REMARK 500 4 LEU A 30 124.00 -36.92 REMARK 500 4 PRO A 31 -175.15 -69.77 REMARK 500 4 TYR A 58 37.42 -84.66 REMARK 500 4 PRO A 70 -179.01 -69.75 REMARK 500 4 TYR A 73 139.99 -32.29 REMARK 500 4 TRP A 87 45.80 -83.27 REMARK 500 4 SER A 106 136.16 -172.25 REMARK 500 4 PRO A 114 2.45 -69.75 REMARK 500 4 THR A 130 -70.15 -134.37 REMARK 500 4 LEU A 132 41.92 -79.47 REMARK 500 REMARK 500 THIS ENTRY HAS 298 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002010298.1 RELATED DB: TARGETDB DBREF 2EDI A 8 167 UNP Q969M7 UBE2F_HUMAN 26 185 SEQADV 2EDI GLY A 1 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI SER A 2 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI SER A 3 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI GLY A 4 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI SER A 5 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI SER A 6 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI GLY A 7 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI SER A 168 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI GLY A 169 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI PRO A 170 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI SER A 171 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI SER A 172 UNP Q969M7 EXPRESSION TAG SEQADV 2EDI GLY A 173 UNP Q969M7 EXPRESSION TAG SEQRES 1 A 173 GLY SER SER GLY SER SER GLY SER THR ARG ARG VAL SER SEQRES 2 A 173 VAL ARG ASP LYS LEU LEU VAL LYS GLU VAL ALA GLU LEU SEQRES 3 A 173 GLU ALA ASN LEU PRO CYS THR CYS LYS VAL HIS PHE PRO SEQRES 4 A 173 ASP PRO ASN LYS LEU HIS CYS PHE GLN LEU THR VAL THR SEQRES 5 A 173 PRO ASP GLU GLY TYR TYR GLN GLY GLY LYS PHE GLN PHE SEQRES 6 A 173 GLU THR GLU VAL PRO ASP ALA TYR ASN MET VAL PRO PRO SEQRES 7 A 173 LYS VAL LYS CYS LEU THR LYS ILE TRP HIS PRO ASN ILE SEQRES 8 A 173 THR GLU THR GLY GLU ILE CYS LEU SER LEU LEU ARG GLU SEQRES 9 A 173 HIS SER ILE ASP GLY THR GLY TRP ALA PRO THR ARG THR SEQRES 10 A 173 LEU LYS ASP VAL VAL TRP GLY LEU ASN SER LEU PHE THR SEQRES 11 A 173 ASP LEU LEU ASN PHE ASP ASP PRO LEU ASN ILE GLU ALA SEQRES 12 A 173 ALA GLU HIS HIS LEU ARG ASP LYS GLU ASP PHE ARG ASN SEQRES 13 A 173 LYS VAL ASP ASP TYR ILE LYS ARG TYR ALA ARG SER GLY SEQRES 14 A 173 PRO SER SER GLY HELIX 1 1 SER A 13 LEU A 30 1 18 HELIX 2 2 THR A 117 LEU A 128 1 12 HELIX 3 3 ASN A 140 ASP A 150 1 11 HELIX 4 4 ASP A 150 ALA A 166 1 17 SHEET 1 A 4 CYS A 34 HIS A 37 0 SHEET 2 A 4 PHE A 47 VAL A 51 -1 O GLN A 48 N HIS A 37 SHEET 3 A 4 PHE A 63 GLU A 68 -1 O PHE A 65 N LEU A 49 SHEET 4 A 4 LYS A 79 CYS A 82 -1 O LYS A 81 N GLU A 66 CISPEP 1 TYR A 73 ASN A 74 1 0.01 CISPEP 2 TYR A 73 ASN A 74 2 0.02 CISPEP 3 TYR A 73 ASN A 74 3 0.00 CISPEP 4 TYR A 73 ASN A 74 4 -0.06 CISPEP 5 TYR A 73 ASN A 74 5 0.03 CISPEP 6 TYR A 73 ASN A 74 6 0.03 CISPEP 7 TYR A 73 ASN A 74 7 -0.05 CISPEP 8 TYR A 73 ASN A 74 8 -0.02 CISPEP 9 TYR A 73 ASN A 74 9 -0.05 CISPEP 10 TYR A 73 ASN A 74 10 -0.08 CISPEP 11 TYR A 73 ASN A 74 11 -0.10 CISPEP 12 TYR A 73 ASN A 74 12 0.00 CISPEP 13 TYR A 73 ASN A 74 13 0.02 CISPEP 14 TYR A 73 ASN A 74 14 0.01 CISPEP 15 TYR A 73 ASN A 74 15 -0.02 CISPEP 16 TYR A 73 ASN A 74 16 -0.04 CISPEP 17 TYR A 73 ASN A 74 17 0.03 CISPEP 18 TYR A 73 ASN A 74 18 -0.01 CISPEP 19 TYR A 73 ASN A 74 19 0.07 CISPEP 20 TYR A 73 ASN A 74 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1