data_2EDK # _entry.id 2EDK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EDK pdb_00002edk 10.2210/pdb2edk/pdb RCSB RCSB026531 ? ? WWPDB D_1000026531 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsg002000057.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EDK _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sano, R.' 1 'Hayashi, F.' 2 'Yoshida, M.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the third ig-like domain from human Myosin-binding protein C, fast-type' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sano, R.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Myosin-binding protein C, fast-type' _entity.formula_weight 11376.772 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment I-set _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Fast MyBP-C, C-protein, skeletal muscle fast isoform' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRG RYQVITNGGQCEAELIVEEKQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRG RYQVITNGGQCEAELIVEEKQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsg002000057.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 VAL n 1 10 LEU n 1 11 ILE n 1 12 VAL n 1 13 THR n 1 14 PRO n 1 15 LEU n 1 16 GLU n 1 17 ASP n 1 18 GLN n 1 19 GLN n 1 20 VAL n 1 21 PHE n 1 22 VAL n 1 23 GLY n 1 24 ASP n 1 25 ARG n 1 26 VAL n 1 27 GLU n 1 28 MET n 1 29 ALA n 1 30 VAL n 1 31 GLU n 1 32 VAL n 1 33 SER n 1 34 GLU n 1 35 GLU n 1 36 GLY n 1 37 ALA n 1 38 GLN n 1 39 VAL n 1 40 MET n 1 41 TRP n 1 42 MET n 1 43 LYS n 1 44 ASN n 1 45 GLY n 1 46 VAL n 1 47 GLU n 1 48 LEU n 1 49 THR n 1 50 ARG n 1 51 GLU n 1 52 ASP n 1 53 SER n 1 54 PHE n 1 55 LYS n 1 56 ALA n 1 57 ARG n 1 58 TYR n 1 59 ARG n 1 60 PHE n 1 61 LYS n 1 62 LYS n 1 63 ASP n 1 64 GLY n 1 65 LYS n 1 66 ARG n 1 67 HIS n 1 68 ILE n 1 69 LEU n 1 70 ILE n 1 71 PHE n 1 72 SER n 1 73 ASP n 1 74 VAL n 1 75 VAL n 1 76 GLN n 1 77 GLU n 1 78 ASP n 1 79 ARG n 1 80 GLY n 1 81 ARG n 1 82 TYR n 1 83 GLN n 1 84 VAL n 1 85 ILE n 1 86 THR n 1 87 ASN n 1 88 GLY n 1 89 GLY n 1 90 GLN n 1 91 CYS n 1 92 GLU n 1 93 ALA n 1 94 GLU n 1 95 LEU n 1 96 ILE n 1 97 VAL n 1 98 GLU n 1 99 GLU n 1 100 LYS n 1 101 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene MYBPC2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060417-07 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MYPC2_HUMAN _struct_ref.pdbx_db_accession Q14324 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKDGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITN GGQCEAELIVEEKQ ; _struct_ref.pdbx_align_begin 345 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EDK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14324 _struct_ref_seq.db_align_beg 345 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 438 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 101 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EDK GLY A 1 ? UNP Q14324 ? ? 'cloning artifact' 1 1 1 2EDK SER A 2 ? UNP Q14324 ? ? 'cloning artifact' 2 2 1 2EDK SER A 3 ? UNP Q14324 ? ? 'cloning artifact' 3 3 1 2EDK GLY A 4 ? UNP Q14324 ? ? 'cloning artifact' 4 4 1 2EDK SER A 5 ? UNP Q14324 ? ? 'cloning artifact' 5 5 1 2EDK SER A 6 ? UNP Q14324 ? ? 'cloning artifact' 6 6 1 2EDK GLY A 7 ? UNP Q14324 ? ? 'cloning artifact' 7 7 1 2EDK ASN A 44 ? UNP Q14324 ASP 381 'SEE REMARK 999' 44 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.13mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3, 90% H2O; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 900 ? # _pdbx_nmr_refine.entry_id 2EDK _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EDK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EDK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20060702 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9822 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EDK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EDK _struct.title 'Solution structure of the third ig-like domain from human Myosin-binding protein C, fast-type' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EDK _struct_keywords.pdbx_keywords 'CONTRACTILE PROTEIN' _struct_keywords.text ;Ig fold, Fast MyBP-C, C-protein, skeletal muscle fast-isoform, MYBPCF, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CONTRACTILE PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 75 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ARG _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 79 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 75 _struct_conf.end_auth_comp_id ARG _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 79 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 11 ? THR A 13 ? ILE A 11 THR A 13 A 2 VAL A 30 ? VAL A 32 ? VAL A 30 VAL A 32 A 3 ARG A 66 ? ILE A 70 ? ARG A 66 ILE A 70 A 4 ARG A 59 ? LYS A 62 ? ARG A 59 LYS A 62 B 1 GLN A 18 ? PHE A 21 ? GLN A 18 PHE A 21 B 2 LEU A 95 ? GLU A 98 ? LEU A 95 GLU A 98 C 1 MET A 40 ? LYS A 43 ? MET A 40 LYS A 43 C 2 TYR A 82 ? ILE A 85 ? TYR A 82 ILE A 85 C 3 GLN A 90 ? CYS A 91 ? GLN A 90 CYS A 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 13 ? N THR A 13 O GLU A 31 ? O GLU A 31 A 2 3 N VAL A 30 ? N VAL A 30 O HIS A 67 ? O HIS A 67 A 3 4 O ILE A 68 ? O ILE A 68 N LYS A 61 ? N LYS A 61 B 1 2 N VAL A 20 ? N VAL A 20 O ILE A 96 ? O ILE A 96 C 1 2 N MET A 40 ? N MET A 40 O ILE A 85 ? O ILE A 85 C 2 3 N VAL A 84 ? N VAL A 84 O CYS A 91 ? O CYS A 91 # _database_PDB_matrix.entry_id 2EDK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EDK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 MET 28 28 28 MET MET A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 MET 40 40 40 MET MET A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 MET 42 42 42 MET MET A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 CYS 91 91 91 CYS CYS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 GLN 101 101 101 GLN GLN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The authors confirm that this position is ASN. They think this is a variant of the protein. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 14 ? ? -69.78 -173.92 2 1 GLU A 35 ? ? -60.53 -71.98 3 1 GLN A 38 ? ? -94.23 38.37 4 1 ASN A 44 ? ? 49.29 27.52 5 1 LEU A 48 ? ? -67.79 83.17 6 1 ARG A 50 ? ? -108.24 49.61 7 1 ASP A 52 ? ? -51.21 109.49 8 1 ASP A 63 ? ? -112.98 63.16 9 1 SER A 72 ? ? -35.15 -37.14 10 2 ASP A 17 ? ? -38.63 126.83 11 2 GLN A 38 ? ? -97.39 33.75 12 2 ASN A 44 ? ? 34.84 45.37 13 2 LEU A 48 ? ? -103.65 66.59 14 2 ASP A 52 ? ? -102.97 45.71 15 2 SER A 72 ? ? -40.81 -70.04 16 2 ASN A 87 ? ? -89.15 38.80 17 3 LEU A 15 ? ? -64.12 -178.41 18 3 GLN A 38 ? ? -97.60 38.32 19 3 LYS A 65 ? ? -82.95 40.37 20 3 ASN A 87 ? ? -84.93 33.04 21 4 VAL A 9 ? ? -119.30 79.44 22 4 LEU A 15 ? ? -59.04 171.12 23 4 ARG A 50 ? ? -116.00 -73.84 24 4 GLU A 51 ? ? -35.56 -34.59 25 4 ARG A 66 ? ? -160.52 105.22 26 4 ASN A 87 ? ? -82.00 39.90 27 5 SER A 5 ? ? 38.39 53.65 28 5 PRO A 14 ? ? -69.77 -167.95 29 5 ASP A 17 ? ? -38.15 120.74 30 5 GLN A 38 ? ? -98.67 39.42 31 5 PHE A 54 ? ? -52.24 -175.49 32 5 ARG A 57 ? ? 49.17 25.05 33 5 ASN A 87 ? ? -85.53 41.05 34 5 LYS A 100 ? ? -49.06 168.75 35 6 PRO A 8 ? ? -69.78 -175.73 36 6 PRO A 14 ? ? -69.80 -169.70 37 6 LEU A 48 ? ? -100.89 77.54 38 6 THR A 49 ? ? -34.44 104.17 39 6 ALA A 56 ? ? -53.37 -176.25 40 6 LYS A 65 ? ? 40.88 28.25 41 6 ASP A 78 ? ? -38.98 -37.23 42 6 ASN A 87 ? ? -80.69 46.10 43 6 LYS A 100 ? ? -44.14 164.39 44 7 PRO A 14 ? ? -69.86 -176.41 45 7 ASP A 17 ? ? -36.99 121.55 46 7 GLU A 35 ? ? -69.87 -74.66 47 7 GLN A 38 ? ? -84.39 36.88 48 7 VAL A 39 ? ? -39.87 144.37 49 7 ASN A 44 ? ? 34.46 35.93 50 7 ASN A 87 ? ? -79.32 47.93 51 8 LEU A 15 ? ? -68.20 -177.94 52 8 VAL A 39 ? ? -36.04 133.82 53 8 THR A 49 ? ? -34.97 112.16 54 8 ASP A 52 ? ? -38.51 105.31 55 8 LYS A 65 ? ? -85.67 35.15 56 8 LYS A 100 ? ? -38.39 158.30 57 9 GLN A 38 ? ? -88.81 44.95 58 9 THR A 49 ? ? -55.47 94.57 59 9 ARG A 50 ? ? -82.09 42.48 60 9 PHE A 54 ? ? -47.26 -74.07 61 9 ALA A 56 ? ? -45.48 165.83 62 9 LYS A 65 ? ? -88.45 49.30 63 9 ASN A 87 ? ? -86.58 41.34 64 9 LYS A 100 ? ? -46.16 163.57 65 10 SER A 6 ? ? -160.54 116.20 66 10 PRO A 14 ? ? -69.81 -178.34 67 10 LEU A 48 ? ? -55.59 97.90 68 10 LYS A 55 ? ? 38.87 32.36 69 10 ALA A 56 ? ? -66.87 95.93 70 10 ASP A 63 ? ? -162.17 105.97 71 10 ASN A 87 ? ? -85.18 46.71 72 11 PRO A 14 ? ? -69.75 -172.79 73 11 ASP A 17 ? ? -39.13 127.59 74 11 GLN A 38 ? ? -83.20 41.77 75 11 LEU A 48 ? ? -100.01 62.44 76 11 THR A 49 ? ? -34.21 148.64 77 11 GLU A 51 ? ? -51.73 177.03 78 11 ASP A 52 ? ? -40.05 92.36 79 11 LYS A 65 ? ? 48.81 29.89 80 11 SER A 72 ? ? -37.02 -34.05 81 12 VAL A 9 ? ? -113.86 79.41 82 12 LEU A 15 ? ? -58.71 175.54 83 12 ALA A 37 ? ? -57.42 -179.37 84 12 GLN A 38 ? ? -96.30 52.01 85 12 ARG A 50 ? ? -81.16 41.97 86 12 SER A 53 ? ? -54.19 175.70 87 12 LYS A 55 ? ? -130.14 -43.96 88 12 LYS A 65 ? ? 35.84 50.26 89 12 SER A 72 ? ? -34.60 -72.76 90 12 ASN A 87 ? ? -89.11 44.21 91 13 PRO A 8 ? ? -69.74 -176.16 92 13 LEU A 15 ? ? -56.61 177.63 93 13 ASP A 17 ? ? -39.78 124.97 94 13 THR A 49 ? ? -41.86 151.94 95 13 GLU A 51 ? ? -44.17 153.76 96 13 SER A 72 ? ? -56.36 -71.29 97 13 ASN A 87 ? ? -84.88 38.07 98 14 SER A 2 ? ? -40.49 158.38 99 14 PRO A 14 ? ? -69.79 -174.72 100 14 ASP A 17 ? ? -39.04 115.50 101 14 GLN A 38 ? ? -94.73 33.16 102 14 THR A 49 ? ? -48.57 109.48 103 14 LYS A 65 ? ? -92.36 43.59 104 14 PHE A 71 ? ? -115.77 79.65 105 14 ASN A 87 ? ? -80.25 48.28 106 15 LEU A 15 ? ? -61.62 -177.12 107 15 ASP A 17 ? ? -38.86 119.27 108 15 GLN A 38 ? ? -84.89 33.99 109 15 ASN A 44 ? ? 43.23 25.60 110 15 LEU A 48 ? ? -102.65 70.52 111 15 THR A 49 ? ? -34.90 103.40 112 15 PHE A 54 ? ? -37.31 -33.53 113 15 LYS A 55 ? ? -92.01 39.77 114 15 ASN A 87 ? ? -87.47 49.97 115 16 SER A 3 ? ? -36.18 143.75 116 16 PRO A 14 ? ? -69.73 -175.32 117 16 VAL A 46 ? ? -165.30 109.88 118 16 LYS A 61 ? ? -161.11 116.63 119 16 ARG A 79 ? ? -38.73 119.43 120 17 SER A 5 ? ? -52.76 107.19 121 17 SER A 33 ? ? -91.39 38.93 122 17 GLU A 34 ? ? -166.07 110.14 123 17 GLN A 38 ? ? -107.96 61.38 124 17 ASN A 44 ? ? 38.27 36.05 125 17 GLU A 51 ? ? -43.08 161.72 126 17 LYS A 65 ? ? -91.38 33.52 127 17 ASN A 87 ? ? -87.81 47.64 128 18 SER A 3 ? ? -130.10 -49.50 129 18 PRO A 14 ? ? -69.70 -174.06 130 18 GLU A 35 ? ? -95.80 -71.76 131 18 VAL A 39 ? ? -35.83 129.79 132 18 LYS A 55 ? ? -107.25 73.28 133 18 ASN A 87 ? ? -89.85 46.97 134 19 PRO A 8 ? ? -69.76 -163.80 135 19 PRO A 14 ? ? -69.81 -175.36 136 19 ASP A 17 ? ? -37.16 106.02 137 19 GLN A 38 ? ? -93.07 45.34 138 19 ARG A 50 ? ? -99.51 46.65 139 19 LYS A 55 ? ? -98.35 45.64 140 19 LYS A 65 ? ? -85.23 37.89 141 19 SER A 72 ? ? -104.46 63.42 142 19 ASP A 73 ? ? 74.95 55.04 143 19 VAL A 74 ? ? -31.78 147.50 144 19 ASP A 78 ? ? -34.09 -37.70 145 20 ASP A 17 ? ? -36.36 135.98 146 20 SER A 33 ? ? -99.77 37.53 147 20 ALA A 37 ? ? -61.75 -179.35 148 20 ASP A 52 ? ? -38.31 102.35 149 20 LYS A 65 ? ? -80.50 44.52 150 20 SER A 72 ? ? -34.64 -71.10 151 20 ASN A 87 ? ? -85.68 42.79 #