HEADER CONTRACTILE PROTEIN 14-FEB-07 2EDK TITLE SOLUTION STRUCTURE OF THE THIRD IG-LIKE DOMAIN FROM HUMAN MYOSIN- TITLE 2 BINDING PROTEIN C, FAST-TYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-BINDING PROTEIN C, FAST-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: I-SET; COMPND 5 SYNONYM: FAST MYBP-C, C-PROTEIN, SKELETAL MUSCLE FAST ISOFORM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYBPC2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060417-07; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS IG FOLD, FAST MYBP-C, C-PROTEIN, SKELETAL MUSCLE FAST-ISOFORM, KEYWDS 2 MYBPCF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CONTRACTILE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EDK 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EDK 1 VERSN REVDAT 1 14-AUG-07 2EDK 0 JRNL AUTH R.SANO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD IG-LIKE DOMAIN FROM HUMAN JRNL TITL 2 MYOSIN-BINDING PROTEIN C, FAST-TYPE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EDK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026531. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3, 90% REMARK 210 H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 14 -173.92 -69.78 REMARK 500 1 GLU A 35 -71.98 -60.53 REMARK 500 1 GLN A 38 38.37 -94.23 REMARK 500 1 ASN A 44 27.52 49.29 REMARK 500 1 LEU A 48 83.17 -67.79 REMARK 500 1 ARG A 50 49.61 -108.24 REMARK 500 1 ASP A 52 109.49 -51.21 REMARK 500 1 ASP A 63 63.16 -112.98 REMARK 500 1 SER A 72 -37.14 -35.15 REMARK 500 2 ASP A 17 126.83 -38.63 REMARK 500 2 GLN A 38 33.75 -97.39 REMARK 500 2 ASN A 44 45.37 34.84 REMARK 500 2 LEU A 48 66.59 -103.65 REMARK 500 2 ASP A 52 45.71 -102.97 REMARK 500 2 SER A 72 -70.04 -40.81 REMARK 500 2 ASN A 87 38.80 -89.15 REMARK 500 3 LEU A 15 -178.41 -64.12 REMARK 500 3 GLN A 38 38.32 -97.60 REMARK 500 3 LYS A 65 40.37 -82.95 REMARK 500 3 ASN A 87 33.04 -84.93 REMARK 500 4 VAL A 9 79.44 -119.30 REMARK 500 4 LEU A 15 171.12 -59.04 REMARK 500 4 ARG A 50 -73.84 -116.00 REMARK 500 4 GLU A 51 -34.59 -35.56 REMARK 500 4 ARG A 66 105.22 -160.52 REMARK 500 4 ASN A 87 39.90 -82.00 REMARK 500 5 SER A 5 53.65 38.39 REMARK 500 5 PRO A 14 -167.95 -69.77 REMARK 500 5 ASP A 17 120.74 -38.15 REMARK 500 5 GLN A 38 39.42 -98.67 REMARK 500 5 PHE A 54 -175.49 -52.24 REMARK 500 5 ARG A 57 25.05 49.17 REMARK 500 5 ASN A 87 41.05 -85.53 REMARK 500 5 LYS A 100 168.75 -49.06 REMARK 500 6 PRO A 8 -175.73 -69.78 REMARK 500 6 PRO A 14 -169.70 -69.80 REMARK 500 6 LEU A 48 77.54 -100.89 REMARK 500 6 THR A 49 104.17 -34.44 REMARK 500 6 ALA A 56 -176.25 -53.37 REMARK 500 6 LYS A 65 28.25 40.88 REMARK 500 6 ASP A 78 -37.23 -38.98 REMARK 500 6 ASN A 87 46.10 -80.69 REMARK 500 6 LYS A 100 164.39 -44.14 REMARK 500 7 PRO A 14 -176.41 -69.86 REMARK 500 7 ASP A 17 121.55 -36.99 REMARK 500 7 GLU A 35 -74.66 -69.87 REMARK 500 7 GLN A 38 36.88 -84.39 REMARK 500 7 VAL A 39 144.37 -39.87 REMARK 500 7 ASN A 44 35.93 34.46 REMARK 500 7 ASN A 87 47.93 -79.32 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSG002000057.2 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS CONFIRM THAT THIS POSITION IS ASN. REMARK 999 THEY THINK THIS IS A VARIANT OF THE PROTEIN. DBREF 2EDK A 8 101 UNP Q14324 MYPC2_HUMAN 345 438 SEQADV 2EDK GLY A 1 UNP Q14324 CLONING ARTIFACT SEQADV 2EDK SER A 2 UNP Q14324 CLONING ARTIFACT SEQADV 2EDK SER A 3 UNP Q14324 CLONING ARTIFACT SEQADV 2EDK GLY A 4 UNP Q14324 CLONING ARTIFACT SEQADV 2EDK SER A 5 UNP Q14324 CLONING ARTIFACT SEQADV 2EDK SER A 6 UNP Q14324 CLONING ARTIFACT SEQADV 2EDK GLY A 7 UNP Q14324 CLONING ARTIFACT SEQADV 2EDK ASN A 44 UNP Q14324 ASP 381 SEE REMARK 999 SEQRES 1 A 101 GLY SER SER GLY SER SER GLY PRO VAL LEU ILE VAL THR SEQRES 2 A 101 PRO LEU GLU ASP GLN GLN VAL PHE VAL GLY ASP ARG VAL SEQRES 3 A 101 GLU MET ALA VAL GLU VAL SER GLU GLU GLY ALA GLN VAL SEQRES 4 A 101 MET TRP MET LYS ASN GLY VAL GLU LEU THR ARG GLU ASP SEQRES 5 A 101 SER PHE LYS ALA ARG TYR ARG PHE LYS LYS ASP GLY LYS SEQRES 6 A 101 ARG HIS ILE LEU ILE PHE SER ASP VAL VAL GLN GLU ASP SEQRES 7 A 101 ARG GLY ARG TYR GLN VAL ILE THR ASN GLY GLY GLN CYS SEQRES 8 A 101 GLU ALA GLU LEU ILE VAL GLU GLU LYS GLN HELIX 1 1 VAL A 75 ARG A 79 5 5 SHEET 1 A 4 ILE A 11 THR A 13 0 SHEET 2 A 4 VAL A 30 VAL A 32 -1 O GLU A 31 N THR A 13 SHEET 3 A 4 ARG A 66 ILE A 70 -1 O HIS A 67 N VAL A 30 SHEET 4 A 4 ARG A 59 LYS A 62 -1 N LYS A 61 O ILE A 68 SHEET 1 B 2 GLN A 18 PHE A 21 0 SHEET 2 B 2 LEU A 95 GLU A 98 1 O ILE A 96 N VAL A 20 SHEET 1 C 3 MET A 40 LYS A 43 0 SHEET 2 C 3 TYR A 82 ILE A 85 -1 O ILE A 85 N MET A 40 SHEET 3 C 3 GLN A 90 CYS A 91 -1 O CYS A 91 N VAL A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1