data_2EDL # _entry.id 2EDL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EDL pdb_00002edl 10.2210/pdb2edl/pdb RCSB RCSB026532 ? ? WWPDB D_1000026532 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002001528.7 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EDL _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagashima, K.' 1 'Yoshida, M.' 2 'Hayashi, F.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the ig-like domain (3801-3897) of human obscurin' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagashima, K.' 1 ? primary 'Yoshida, M.' 2 ? primary 'Hayashi, F.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Obscurin _entity.formula_weight 11705.905 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment I-set _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Obscurin-myosin light chain kinase, Obscurin-MLCK, Obscurin-RhoGEF' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPARFIEDVKNQEAREGATAVLQCELSKAAPVEWRKGSETLRGGDRYSLRQDGTRCELQIHGLSVADTGEYSCV CGQERTSATLTVRALPARFTQDLKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPARFIEDVKNQEAREGATAVLQCELSKAAPVEWRKGSETLRGGDRYSLRQDGTRCELQIHGLSVADTGEYSCV CGQERTSATLTVRALPARFTQDLKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002001528.7 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 ALA n 1 10 ARG n 1 11 PHE n 1 12 ILE n 1 13 GLU n 1 14 ASP n 1 15 VAL n 1 16 LYS n 1 17 ASN n 1 18 GLN n 1 19 GLU n 1 20 ALA n 1 21 ARG n 1 22 GLU n 1 23 GLY n 1 24 ALA n 1 25 THR n 1 26 ALA n 1 27 VAL n 1 28 LEU n 1 29 GLN n 1 30 CYS n 1 31 GLU n 1 32 LEU n 1 33 SER n 1 34 LYS n 1 35 ALA n 1 36 ALA n 1 37 PRO n 1 38 VAL n 1 39 GLU n 1 40 TRP n 1 41 ARG n 1 42 LYS n 1 43 GLY n 1 44 SER n 1 45 GLU n 1 46 THR n 1 47 LEU n 1 48 ARG n 1 49 GLY n 1 50 GLY n 1 51 ASP n 1 52 ARG n 1 53 TYR n 1 54 SER n 1 55 LEU n 1 56 ARG n 1 57 GLN n 1 58 ASP n 1 59 GLY n 1 60 THR n 1 61 ARG n 1 62 CYS n 1 63 GLU n 1 64 LEU n 1 65 GLN n 1 66 ILE n 1 67 HIS n 1 68 GLY n 1 69 LEU n 1 70 SER n 1 71 VAL n 1 72 ALA n 1 73 ASP n 1 74 THR n 1 75 GLY n 1 76 GLU n 1 77 TYR n 1 78 SER n 1 79 CYS n 1 80 VAL n 1 81 CYS n 1 82 GLY n 1 83 GLN n 1 84 GLU n 1 85 ARG n 1 86 THR n 1 87 SER n 1 88 ALA n 1 89 THR n 1 90 LEU n 1 91 THR n 1 92 VAL n 1 93 ARG n 1 94 ALA n 1 95 LEU n 1 96 PRO n 1 97 ALA n 1 98 ARG n 1 99 PHE n 1 100 THR n 1 101 GLN n 1 102 ASP n 1 103 LEU n 1 104 LYS n 1 105 SER n 1 106 GLY n 1 107 PRO n 1 108 SER n 1 109 SER n 1 110 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene OBSCN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051017-22 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OBSCN_HUMAN _struct_ref.pdbx_db_accession Q5VST9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PARFIEDVKNQEAREGATAVLQCELSKAAPVEWRKGSETLRGGDRYSLRQDGTRCELQIHGLSVADTGEYSCVCGQERTS ATLTVRALPARFTQDLK ; _struct_ref.pdbx_align_begin 3801 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EDL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5VST9 _struct_ref_seq.db_align_beg 3801 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 3897 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 104 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EDL GLY A 1 ? UNP Q5VST9 ? ? 'cloning artifact' 1 1 1 2EDL SER A 2 ? UNP Q5VST9 ? ? 'cloning artifact' 2 2 1 2EDL SER A 3 ? UNP Q5VST9 ? ? 'cloning artifact' 3 3 1 2EDL GLY A 4 ? UNP Q5VST9 ? ? 'cloning artifact' 4 4 1 2EDL SER A 5 ? UNP Q5VST9 ? ? 'cloning artifact' 5 5 1 2EDL SER A 6 ? UNP Q5VST9 ? ? 'cloning artifact' 6 6 1 2EDL GLY A 7 ? UNP Q5VST9 ? ? 'cloning artifact' 7 7 1 2EDL SER A 105 ? UNP Q5VST9 ? ? 'cloning artifact' 105 8 1 2EDL GLY A 106 ? UNP Q5VST9 ? ? 'cloning artifact' 106 9 1 2EDL PRO A 107 ? UNP Q5VST9 ? ? 'cloning artifact' 107 10 1 2EDL SER A 108 ? UNP Q5VST9 ? ? 'cloning artifact' 108 11 1 2EDL SER A 109 ? UNP Q5VST9 ? ? 'cloning artifact' 109 12 1 2EDL GLY A 110 ? UNP Q5VST9 ? ? 'cloning artifact' 110 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.07mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3, 10% D2O; 90% H2O' _pdbx_nmr_sample_details.solvent_system '10% D2O; 90% H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EDL _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EDL _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EDL _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031112 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9822 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EDL _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EDL _struct.title 'Solution structure of the ig-like domain (3801-3897) of human obscurin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EDL _struct_keywords.pdbx_keywords 'CONTRACTILE PROTEIN' _struct_keywords.text ;beta-sandwich, ig-fold, Obscrin isoform5, Obscurin-myosin light chain kinase, Obscurin-MLCK, Obscurin-RhoGEF, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CONTRACTILE PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 70 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 74 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 70 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 74 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 18 ? ARG A 21 ? GLN A 18 ARG A 21 A 2 LEU A 90 ? ARG A 93 ? LEU A 90 ARG A 93 B 1 VAL A 27 ? GLU A 31 ? VAL A 27 GLU A 31 B 2 ARG A 61 ? ILE A 66 ? ARG A 61 ILE A 66 B 3 TYR A 53 ? LEU A 55 ? TYR A 53 LEU A 55 C 1 VAL A 38 ? LYS A 42 ? VAL A 38 LYS A 42 C 2 TYR A 77 ? CYS A 81 ? TYR A 77 CYS A 81 C 3 GLU A 84 ? SER A 87 ? GLU A 84 SER A 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 18 ? N GLN A 18 O THR A 91 ? O THR A 91 B 1 2 N CYS A 30 ? N CYS A 30 O CYS A 62 ? O CYS A 62 B 2 3 O GLN A 65 ? O GLN A 65 N SER A 54 ? N SER A 54 C 1 2 N GLU A 39 ? N GLU A 39 O VAL A 80 ? O VAL A 80 C 2 3 N CYS A 79 ? N CYS A 79 O THR A 86 ? O THR A 86 # _database_PDB_matrix.entry_id 2EDL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EDL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 TRP 40 40 40 TRP TRP A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 CYS 62 62 62 CYS CYS A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE Residues 95-104 is based on Q5VST9-5 (isoform 5). ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 17 ? ? -36.36 145.06 2 1 ALA A 35 ? ? -39.12 116.26 3 1 GLU A 39 ? ? -160.92 113.21 4 1 ASP A 58 ? ? -95.21 53.00 5 1 VAL A 71 ? ? -37.80 -35.44 6 1 THR A 74 ? ? -35.63 123.69 7 1 SER A 105 ? ? -41.09 158.48 8 2 SER A 3 ? ? -100.16 -61.34 9 2 ASN A 17 ? ? -39.33 143.33 10 2 GLU A 22 ? ? -34.50 124.34 11 2 LYS A 34 ? ? -170.82 147.84 12 2 GLU A 39 ? ? -161.81 109.16 13 2 THR A 74 ? ? -37.51 122.82 14 2 ARG A 98 ? ? -83.42 38.88 15 3 SER A 2 ? ? -108.56 42.51 16 3 ASN A 17 ? ? -38.22 150.79 17 3 GLU A 22 ? ? -39.56 130.00 18 3 GLU A 39 ? ? -160.49 109.95 19 3 ASP A 51 ? ? -101.15 -71.60 20 3 ALA A 94 ? ? -49.13 161.39 21 4 SER A 2 ? ? -170.42 106.74 22 4 ASN A 17 ? ? -37.27 153.71 23 4 GLU A 22 ? ? -48.06 151.63 24 4 SER A 44 ? ? 34.05 33.30 25 4 THR A 74 ? ? -38.31 124.69 26 4 LEU A 103 ? ? -166.33 117.52 27 5 VAL A 15 ? ? -47.81 153.25 28 5 ASN A 17 ? ? -37.35 135.47 29 5 GLU A 22 ? ? -36.65 129.83 30 5 ALA A 35 ? ? -38.28 121.48 31 5 GLU A 39 ? ? -165.38 116.48 32 5 SER A 105 ? ? -163.31 114.21 33 6 GLU A 22 ? ? -37.75 137.23 34 6 ALA A 24 ? ? -69.15 -176.66 35 6 SER A 44 ? ? 33.24 36.25 36 6 ARG A 52 ? ? -108.08 -64.15 37 7 SER A 2 ? ? 38.95 42.24 38 7 ASP A 51 ? ? -34.27 -70.07 39 7 ARG A 52 ? ? -120.68 -52.25 40 7 SER A 54 ? ? -111.88 73.79 41 7 SER A 105 ? ? -107.79 -60.39 42 8 VAL A 15 ? ? -48.52 152.95 43 8 ALA A 35 ? ? -37.23 117.95 44 8 ASP A 51 ? ? -127.87 -66.46 45 8 ASP A 58 ? ? -89.10 39.60 46 8 LEU A 95 ? ? -49.88 151.90 47 8 PRO A 96 ? ? -69.75 -178.12 48 8 GLN A 101 ? ? -47.78 167.45 49 8 PRO A 107 ? ? -69.81 -174.70 50 9 SER A 6 ? ? -127.90 -52.10 51 9 ASN A 17 ? ? -40.17 151.98 52 9 GLU A 22 ? ? -34.44 124.59 53 9 ALA A 35 ? ? -53.48 106.70 54 9 SER A 44 ? ? 32.39 38.60 55 9 ASP A 51 ? ? -93.08 -73.85 56 9 ASP A 58 ? ? -103.77 45.44 57 9 PRO A 96 ? ? -69.74 88.11 58 9 ASP A 102 ? ? -38.99 154.60 59 9 PRO A 107 ? ? -69.81 -177.42 60 10 SER A 3 ? ? -42.87 104.91 61 10 PHE A 11 ? ? -69.76 96.90 62 10 VAL A 15 ? ? -48.49 151.51 63 10 ASN A 17 ? ? -37.85 144.74 64 10 ALA A 24 ? ? -53.62 -177.24 65 10 ALA A 35 ? ? -36.39 113.54 66 10 ASP A 51 ? ? -98.04 -68.09 67 10 THR A 74 ? ? -39.37 128.77 68 11 SER A 5 ? ? -64.34 89.60 69 11 ALA A 35 ? ? -39.25 122.19 70 11 LYS A 42 ? ? -115.77 79.51 71 11 SER A 44 ? ? 33.47 34.12 72 11 ASP A 51 ? ? -123.60 -52.94 73 11 ALA A 97 ? ? -107.37 43.40 74 11 ASP A 102 ? ? -68.29 87.31 75 12 ASN A 17 ? ? -36.35 150.67 76 12 GLU A 22 ? ? -38.18 140.17 77 12 LYS A 42 ? ? -116.90 79.68 78 12 SER A 44 ? ? 48.78 27.59 79 12 ARG A 48 ? ? -170.81 138.23 80 12 ASP A 51 ? ? -126.51 -52.86 81 12 ASP A 58 ? ? -97.56 39.68 82 12 THR A 74 ? ? -39.79 126.85 83 12 PHE A 99 ? ? -62.57 99.30 84 12 LYS A 104 ? ? -35.23 132.79 85 13 ASN A 17 ? ? -46.15 156.37 86 13 GLU A 22 ? ? -38.09 126.11 87 13 ALA A 35 ? ? -52.78 107.76 88 13 ASP A 58 ? ? -107.11 41.29 89 13 THR A 74 ? ? -38.20 125.43 90 13 THR A 100 ? ? -85.81 38.21 91 14 ASP A 14 ? ? -33.44 133.74 92 14 ASN A 17 ? ? -39.79 143.35 93 14 ARG A 21 ? ? -56.27 -179.78 94 14 ALA A 24 ? ? -57.13 -175.09 95 14 LYS A 42 ? ? -115.13 76.89 96 14 ASP A 51 ? ? -132.77 -59.45 97 14 ASP A 58 ? ? -92.81 41.49 98 14 THR A 74 ? ? -38.96 126.09 99 14 PRO A 96 ? ? -69.70 81.71 100 14 ALA A 97 ? ? -68.64 94.48 101 14 ASP A 102 ? ? -83.53 39.66 102 14 PRO A 107 ? ? -69.74 97.19 103 15 SER A 6 ? ? -57.70 105.73 104 15 ASN A 17 ? ? -37.32 150.82 105 15 THR A 100 ? ? -39.09 109.66 106 16 GLU A 22 ? ? -35.67 140.60 107 16 ALA A 35 ? ? -39.09 113.42 108 16 GLU A 39 ? ? -160.56 114.01 109 16 ARG A 52 ? ? -95.73 -63.82 110 16 SER A 54 ? ? -114.68 76.00 111 16 ASP A 58 ? ? -99.46 36.84 112 16 VAL A 71 ? ? -39.25 -33.72 113 16 ASP A 73 ? ? -38.69 -36.36 114 16 THR A 74 ? ? -37.24 125.60 115 16 LEU A 103 ? ? -87.76 46.91 116 17 SER A 5 ? ? -55.50 107.64 117 17 SER A 6 ? ? -35.98 97.07 118 17 ASN A 17 ? ? -38.79 147.10 119 17 ALA A 20 ? ? -172.15 147.80 120 17 ALA A 35 ? ? -37.24 119.02 121 17 SER A 44 ? ? 33.55 34.10 122 17 ASP A 51 ? ? -132.83 -45.44 123 17 ASP A 58 ? ? -94.50 44.74 124 17 GLN A 101 ? ? -91.91 -61.74 125 18 ASN A 17 ? ? -40.35 150.77 126 18 ALA A 24 ? ? -58.35 -176.33 127 18 ASP A 51 ? ? -123.39 -60.55 128 18 ASP A 58 ? ? -109.44 79.95 129 18 THR A 74 ? ? -39.95 127.98 130 18 ALA A 94 ? ? -48.86 153.16 131 18 ASP A 102 ? ? 37.74 41.64 132 18 SER A 105 ? ? -172.18 135.74 133 19 PHE A 11 ? ? -60.77 98.08 134 19 ASN A 17 ? ? -34.25 151.11 135 19 ALA A 35 ? ? -36.05 117.51 136 19 ASP A 58 ? ? -83.00 44.20 137 19 THR A 74 ? ? -36.81 121.55 138 19 ASP A 102 ? ? -92.54 -62.63 139 20 PRO A 8 ? ? -69.75 -174.32 140 20 ASN A 17 ? ? -37.79 155.82 141 20 GLU A 22 ? ? -36.00 127.37 142 20 ALA A 24 ? ? -67.61 -174.98 143 20 ASP A 58 ? ? -89.13 34.37 144 20 VAL A 71 ? ? -38.95 -36.95 145 20 THR A 74 ? ? -37.16 133.55 146 20 LEU A 103 ? ? -108.40 42.77 #