HEADER CELL ADHESION 14-FEB-07 2EDO TITLE SOLUTION STRUCTURE OF THE FIRST IG-LIKE DOMAIN FROM HUMAN CD48 ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD48 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: V-SET; COMPND 5 SYNONYM: B-LYMPHOCYTE ACTIVATION MARKER BLAST-1, BCM1 SURFACE COMPND 6 ANTIGEN, LEUKOCYTE ANTIGEN MEM-102, TCT.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD48, BCM1, BLAST1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060411-11; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, IG-FOLD, B-LYMPHOCYTE ACTIVATION MARKER BLAST-1, BCM1 KEYWDS 2 SURFACE ANTIGEN, LEUKOCYTE ANTIGEN MEM-102, TCT.1, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.NAGASHIMA,T.NAGASHIMA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EDO 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EDO 1 VERSN REVDAT 1 14-AUG-07 2EDO 0 JRNL AUTH K.NAGASHIMA,T.NAGASHIMA,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST IG-LIKE DOMAIN FROM HUMAN JRNL TITL 2 CD48 ANTIGEN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EDO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026535. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL 1MM D-DTT; 0.02% NAN3, 10% REMARK 210 D2O; 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031112, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9822, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_13C-SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_15N-SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 8 48.43 -82.10 REMARK 500 1 LEU A 30 148.11 -39.78 REMARK 500 1 ASN A 33 114.59 -162.48 REMARK 500 1 SER A 52 26.46 38.59 REMARK 500 1 ARG A 53 -73.83 -132.26 REMARK 500 1 GLU A 59 45.26 34.22 REMARK 500 1 VAL A 66 -178.13 -66.86 REMARK 500 1 LYS A 79 43.38 37.91 REMARK 500 1 VAL A 80 165.84 -42.38 REMARK 500 1 ASN A 85 105.67 -46.35 REMARK 500 1 PRO A 113 -167.05 -69.71 REMARK 500 2 LEU A 30 150.42 -33.92 REMARK 500 2 GLU A 32 -39.54 -34.33 REMARK 500 2 SER A 52 -31.20 -35.95 REMARK 500 2 ARG A 53 -68.09 -131.48 REMARK 500 2 GLU A 59 102.64 -51.43 REMARK 500 2 VAL A 66 165.37 -45.91 REMARK 500 2 ASP A 84 -35.10 -38.64 REMARK 500 2 ASN A 85 94.67 -44.19 REMARK 500 2 PRO A 113 -170.01 -69.77 REMARK 500 2 GLU A 120 127.90 -175.03 REMARK 500 3 SER A 2 105.46 -165.30 REMARK 500 3 SER A 29 139.12 -37.12 REMARK 500 3 LEU A 30 153.00 -35.59 REMARK 500 3 SER A 52 -29.60 -36.27 REMARK 500 3 ARG A 53 -68.51 -123.62 REMARK 500 3 GLU A 59 99.24 -43.57 REMARK 500 3 VAL A 66 164.05 -44.55 REMARK 500 3 PRO A 70 2.40 -69.82 REMARK 500 3 VAL A 80 179.62 -50.80 REMARK 500 3 ASN A 85 98.77 -59.44 REMARK 500 3 PRO A 113 -171.81 -69.70 REMARK 500 4 GLN A 8 152.95 -43.63 REMARK 500 4 ILE A 26 31.97 -87.33 REMARK 500 4 SER A 27 37.17 36.11 REMARK 500 4 LEU A 30 154.69 -36.12 REMARK 500 4 ILE A 47 -65.04 -106.02 REMARK 500 4 SER A 52 -32.24 -34.99 REMARK 500 4 ARG A 53 -75.26 -101.61 REMARK 500 4 GLU A 59 92.93 -60.60 REMARK 500 4 PHE A 62 -36.10 -37.73 REMARK 500 4 VAL A 66 167.45 -49.01 REMARK 500 4 PRO A 70 2.69 -69.77 REMARK 500 4 VAL A 80 175.95 -52.79 REMARK 500 4 ASP A 84 -34.47 -36.95 REMARK 500 4 ASN A 85 95.31 -52.37 REMARK 500 4 PRO A 113 -172.61 -69.71 REMARK 500 4 ILE A 117 92.50 -55.14 REMARK 500 5 PRO A 31 -173.44 -69.80 REMARK 500 5 GLU A 32 159.48 -39.29 REMARK 500 REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003427.1 RELATED DB: TARGETDB DBREF 2EDO A 8 121 UNP P09326 CD48_HUMAN 27 140 SEQADV 2EDO GLY A 1 UNP P09326 CLONING ARTIFACT SEQADV 2EDO SER A 2 UNP P09326 CLONING ARTIFACT SEQADV 2EDO SER A 3 UNP P09326 CLONING ARTIFACT SEQADV 2EDO GLY A 4 UNP P09326 CLONING ARTIFACT SEQADV 2EDO SER A 5 UNP P09326 CLONING ARTIFACT SEQADV 2EDO SER A 6 UNP P09326 CLONING ARTIFACT SEQADV 2EDO GLY A 7 UNP P09326 CLONING ARTIFACT SEQRES 1 A 121 GLY SER SER GLY SER SER GLY GLN GLY HIS LEU VAL HIS SEQRES 2 A 121 MET THR VAL VAL SER GLY SER ASN VAL THR LEU ASN ILE SEQRES 3 A 121 SER GLU SER LEU PRO GLU ASN TYR LYS GLN LEU THR TRP SEQRES 4 A 121 PHE TYR THR PHE ASP GLN LYS ILE VAL GLU TRP ASP SER SEQRES 5 A 121 ARG LYS SER LYS TYR PHE GLU SER LYS PHE LYS GLY ARG SEQRES 6 A 121 VAL ARG LEU ASP PRO GLN SER GLY ALA LEU TYR ILE SER SEQRES 7 A 121 LYS VAL GLN LYS GLU ASP ASN SER THR TYR ILE MET ARG SEQRES 8 A 121 VAL LEU LYS LYS THR GLY ASN GLU GLN GLU TRP LYS ILE SEQRES 9 A 121 LYS LEU GLN VAL LEU ASP PRO VAL PRO LYS PRO VAL ILE SEQRES 10 A 121 LYS ILE GLU LYS HELIX 1 1 GLN A 81 ASN A 85 5 5 SHEET 1 A 2 THR A 15 VAL A 17 0 SHEET 2 A 2 GLN A 107 LEU A 109 1 O GLN A 107 N VAL A 16 SHEET 1 B 3 VAL A 22 LEU A 24 0 SHEET 2 B 3 LEU A 75 ILE A 77 -1 O LEU A 75 N LEU A 24 SHEET 3 B 3 ARG A 67 LEU A 68 -1 N ARG A 67 O TYR A 76 SHEET 1 C 5 SER A 55 TYR A 57 0 SHEET 2 C 5 GLN A 45 TRP A 50 -1 N GLU A 49 O LYS A 56 SHEET 3 C 5 TYR A 34 THR A 42 -1 N TRP A 39 O ILE A 47 SHEET 4 C 5 THR A 87 LYS A 94 -1 O ARG A 91 N THR A 38 SHEET 5 C 5 ASN A 98 GLU A 101 -1 O GLN A 100 N VAL A 92 SHEET 1 D 5 SER A 55 TYR A 57 0 SHEET 2 D 5 GLN A 45 TRP A 50 -1 N GLU A 49 O LYS A 56 SHEET 3 D 5 TYR A 34 THR A 42 -1 N TRP A 39 O ILE A 47 SHEET 4 D 5 THR A 87 LYS A 94 -1 O ARG A 91 N THR A 38 SHEET 5 D 5 ILE A 104 LYS A 105 -1 O ILE A 104 N TYR A 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1