HEADER SIGNALING PROTEIN 15-FEB-07 2EDX TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN RECEPTOR-TYPE TYROSINE- TITLE 2 PROTEIN PHOSPHATASE F COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE PHOSPHATASE, RECEPTOR TYPE, F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRF; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051003-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS EC 3.1.3.48, LAR PROTEIN, LEUKOCYTE ANTIGEN RELATED, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2EDX 1 REMARK REVDAT 3 09-MAR-22 2EDX 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EDX 1 VERSN REVDAT 1 21-AUG-07 2EDX 0 JRNL AUTH M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN RECEPTOR-TYPE JRNL TITL 2 TYROSINE-PROTEIN PHOSPHATASE F JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EDX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026544. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM FN3 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 114.53 -161.53 REMARK 500 1 ALA A 14 145.14 -36.13 REMARK 500 1 GLN A 15 -62.39 -107.71 REMARK 500 1 SER A 46 57.73 -117.61 REMARK 500 1 ASP A 116 159.41 -49.14 REMARK 500 1 PRO A 120 3.36 -69.81 REMARK 500 1 GLU A 128 143.77 -173.72 REMARK 500 1 PRO A 131 -174.12 -69.74 REMARK 500 2 GLU A 10 132.25 -170.07 REMARK 500 2 LYS A 24 44.53 34.21 REMARK 500 2 PRO A 43 87.23 -69.73 REMARK 500 2 ASP A 45 107.20 -56.63 REMARK 500 2 ARG A 47 -175.35 -55.08 REMARK 500 2 THR A 115 162.67 -49.45 REMARK 500 2 PRO A 120 3.32 -69.69 REMARK 500 2 PRO A 131 -176.21 -69.77 REMARK 500 3 ALA A 14 -177.22 -54.39 REMARK 500 3 PRO A 120 3.58 -69.70 REMARK 500 3 PRO A 124 -176.41 -69.77 REMARK 500 3 PRO A 131 -178.27 -69.78 REMARK 500 3 SER A 132 -62.25 -96.44 REMARK 500 4 ALA A 14 -176.80 -58.49 REMARK 500 4 SER A 19 -62.20 -98.93 REMARK 500 4 PRO A 43 -168.68 -69.73 REMARK 500 4 SER A 46 47.70 -102.51 REMARK 500 4 PRO A 120 3.09 -69.81 REMARK 500 4 ARG A 125 145.83 -35.49 REMARK 500 4 LYS A 126 148.50 -36.12 REMARK 500 4 GLU A 128 151.77 -47.76 REMARK 500 4 SER A 129 107.87 -42.11 REMARK 500 4 SER A 133 152.78 -43.37 REMARK 500 5 ILE A 9 105.39 -54.01 REMARK 500 5 ARG A 12 117.66 -174.41 REMARK 500 5 PRO A 43 -176.24 -69.80 REMARK 500 5 THR A 115 162.72 -49.74 REMARK 500 5 PRO A 120 3.30 -69.72 REMARK 500 5 PRO A 131 -178.30 -69.75 REMARK 500 6 THR A 8 160.64 -47.93 REMARK 500 6 PRO A 104 -179.42 -69.75 REMARK 500 6 PRO A 120 3.68 -69.74 REMARK 500 6 LYS A 126 87.34 -49.79 REMARK 500 7 SER A 19 -61.73 -103.07 REMARK 500 7 VAL A 25 107.63 -59.53 REMARK 500 7 ARG A 47 179.06 -57.29 REMARK 500 7 ILE A 51 92.76 -62.47 REMARK 500 7 ASP A 116 154.50 -38.49 REMARK 500 7 PRO A 120 2.26 -69.80 REMARK 500 8 THR A 8 139.99 -38.01 REMARK 500 8 THR A 13 59.60 -94.35 REMARK 500 8 LYS A 24 46.37 31.69 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001516.2 RELATED DB: TARGETDB DBREF 2EDX A 8 128 UNP Q5T022 Q5T022_HUMAN 596 716 SEQADV 2EDX GLY A 1 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 2 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 3 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX GLY A 4 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 5 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 6 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX GLY A 7 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 129 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX GLY A 130 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX PRO A 131 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 132 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 133 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX GLY A 134 UNP Q5T022 CLONING ARTIFACT SEQRES 1 A 134 GLY SER SER GLY SER SER GLY THR ILE GLU ALA ARG THR SEQRES 2 A 134 ALA GLN SER THR PRO SER ALA PRO PRO GLN LYS VAL MET SEQRES 3 A 134 CYS VAL SER MET GLY SER THR THR VAL ARG VAL SER TRP SEQRES 4 A 134 VAL PRO PRO PRO ALA ASP SER ARG ASN GLY VAL ILE THR SEQRES 5 A 134 GLN TYR SER VAL ALA TYR GLU ALA VAL ASP GLY GLU ASP SEQRES 6 A 134 ARG GLY ARG HIS VAL VAL ASP GLY ILE SER ARG GLU HIS SEQRES 7 A 134 SER SER TRP ASP LEU VAL GLY LEU GLU LYS TRP THR GLU SEQRES 8 A 134 TYR ARG VAL TRP VAL ARG ALA HIS THR ASP VAL GLY PRO SEQRES 9 A 134 GLY PRO GLU SER SER PRO VAL LEU VAL ARG THR ASP GLU SEQRES 10 A 134 ASP VAL PRO SER GLY PRO PRO ARG LYS VAL GLU SER GLY SEQRES 11 A 134 PRO SER SER GLY SHEET 1 A 3 GLN A 23 VAL A 28 0 SHEET 2 A 3 THR A 34 VAL A 40 -1 O ARG A 36 N VAL A 28 SHEET 3 A 3 SER A 80 VAL A 84 -1 O LEU A 83 N VAL A 35 SHEET 1 B 4 HIS A 69 VAL A 71 0 SHEET 2 B 4 ILE A 51 ALA A 60 -1 N VAL A 56 O VAL A 71 SHEET 3 B 4 GLU A 91 THR A 100 -1 O TRP A 95 N ALA A 57 SHEET 4 B 4 VAL A 111 ARG A 114 -1 O VAL A 113 N TYR A 92 CISPEP 1 PRO A 21 PRO A 22 1 -0.01 CISPEP 2 PRO A 21 PRO A 22 2 -0.06 CISPEP 3 PRO A 21 PRO A 22 3 -0.08 CISPEP 4 PRO A 21 PRO A 22 4 -0.10 CISPEP 5 PRO A 21 PRO A 22 5 -0.09 CISPEP 6 PRO A 21 PRO A 22 6 -0.11 CISPEP 7 PRO A 21 PRO A 22 7 -0.03 CISPEP 8 PRO A 21 PRO A 22 8 -0.14 CISPEP 9 PRO A 21 PRO A 22 9 -0.05 CISPEP 10 PRO A 21 PRO A 22 10 -0.10 CISPEP 11 PRO A 21 PRO A 22 11 -0.03 CISPEP 12 PRO A 21 PRO A 22 12 -0.06 CISPEP 13 PRO A 21 PRO A 22 13 -0.03 CISPEP 14 PRO A 21 PRO A 22 14 0.00 CISPEP 15 PRO A 21 PRO A 22 15 -0.07 CISPEP 16 PRO A 21 PRO A 22 16 -0.11 CISPEP 17 PRO A 21 PRO A 22 17 -0.01 CISPEP 18 PRO A 21 PRO A 22 18 -0.08 CISPEP 19 PRO A 21 PRO A 22 19 -0.04 CISPEP 20 PRO A 21 PRO A 22 20 -0.13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1