HEADER SIGNALING PROTEIN 15-FEB-07 2EDY TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN RECEPTOR-TYPE TYROSINE- TITLE 2 PROTEIN PHOSPHATASE F COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: LAR PROTEIN, LEUKOCYTE ANTIGEN RELATED; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRF; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060123-21; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS EC 3.1.3.48, LAR PROTEIN, LEUKOCYTE ANTIGEN RELATED, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2EDY 1 REMARK REVDAT 3 09-MAR-22 2EDY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EDY 1 VERSN REVDAT 1 21-AUG-07 2EDY 0 JRNL AUTH M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN RECEPTOR-TYPE JRNL TITL 2 TYROSINE-PROTEIN PHOSPHATASE F JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EDY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026545. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FN3 DOMAIN U-15N, 13C; 20MM REMARK 210 D-TRIS HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW REMARK 210 2.0.17, KUJIRA 0.932, CYANA REMARK 210 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 28 107.92 -167.05 REMARK 500 1 ASN A 38 39.59 -89.37 REMARK 500 1 ILE A 42 -34.70 -130.99 REMARK 500 1 ASP A 78 98.39 -68.02 REMARK 500 1 SER A 95 152.35 -48.92 REMARK 500 1 THR A 100 154.89 -44.45 REMARK 500 2 PRO A 12 -179.16 -69.72 REMARK 500 2 ALA A 28 110.46 -167.70 REMARK 500 2 ARG A 37 100.09 -35.63 REMARK 500 2 ASP A 78 98.19 -66.16 REMARK 500 2 THR A 100 152.09 -42.92 REMARK 500 2 PRO A 102 91.83 -69.74 REMARK 500 3 SER A 5 110.92 -163.28 REMARK 500 3 ALA A 28 109.64 -164.75 REMARK 500 3 ARG A 37 168.95 -44.75 REMARK 500 3 ASP A 78 97.53 -66.75 REMARK 500 3 SER A 95 150.25 -46.18 REMARK 500 3 PRO A 102 98.78 -69.73 REMARK 500 4 ALA A 28 107.16 -169.36 REMARK 500 4 GLU A 36 47.99 -101.48 REMARK 500 4 ASN A 38 49.20 -81.89 REMARK 500 4 PRO A 91 -176.87 -69.79 REMARK 500 4 SER A 95 156.45 -45.47 REMARK 500 4 THR A 100 158.62 -40.06 REMARK 500 5 HIS A 16 -176.20 -171.27 REMARK 500 5 ALA A 28 105.00 -167.15 REMARK 500 5 ASP A 78 96.21 -64.88 REMARK 500 5 THR A 100 155.67 -42.54 REMARK 500 6 SER A 2 42.31 -81.56 REMARK 500 6 SER A 6 -66.05 -102.32 REMARK 500 6 ALA A 28 107.35 -167.49 REMARK 500 6 GLU A 36 50.69 -110.07 REMARK 500 6 SER A 95 155.28 -42.90 REMARK 500 6 THR A 100 151.19 -41.82 REMARK 500 7 SER A 2 102.27 -49.84 REMARK 500 7 ALA A 28 109.22 -166.02 REMARK 500 7 ILE A 42 -33.64 -131.50 REMARK 500 7 ASP A 78 96.67 -66.83 REMARK 500 7 THR A 100 151.89 -43.65 REMARK 500 8 SER A 5 43.62 34.82 REMARK 500 8 ALA A 28 107.37 -167.07 REMARK 500 8 GLU A 36 54.91 -111.90 REMARK 500 8 SER A 43 -179.60 -172.59 REMARK 500 8 ASP A 78 96.84 -67.02 REMARK 500 8 SER A 86 -27.11 -38.55 REMARK 500 8 PRO A 91 -178.67 -69.80 REMARK 500 8 THR A 100 156.49 -43.49 REMARK 500 8 PRO A 102 96.88 -69.74 REMARK 500 9 ALA A 28 110.74 -168.06 REMARK 500 9 ASN A 38 43.70 -109.14 REMARK 500 REMARK 500 THIS ENTRY HAS 139 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001516.3 RELATED DB: TARGETDB DBREF 2EDY A 8 103 UNP P10586 PTPRF_HUMAN 905 1000 SEQADV 2EDY GLY A 1 UNP P10586 EXPRESSION TAG SEQADV 2EDY SER A 2 UNP P10586 EXPRESSION TAG SEQADV 2EDY SER A 3 UNP P10586 EXPRESSION TAG SEQADV 2EDY GLY A 4 UNP P10586 EXPRESSION TAG SEQADV 2EDY SER A 5 UNP P10586 EXPRESSION TAG SEQADV 2EDY SER A 6 UNP P10586 EXPRESSION TAG SEQADV 2EDY GLY A 7 UNP P10586 EXPRESSION TAG SEQRES 1 A 103 GLY SER SER GLY SER SER GLY PRO SER GLY PHE PRO GLN SEQRES 2 A 103 ASN LEU HIS VAL THR GLY LEU THR THR SER THR THR GLU SEQRES 3 A 103 LEU ALA TRP ASP PRO PRO VAL LEU ALA GLU ARG ASN GLY SEQRES 4 A 103 ARG ILE ILE SER TYR THR VAL VAL PHE ARG ASP ILE ASN SEQRES 5 A 103 SER GLN GLN GLU LEU GLN ASN ILE THR THR ASP THR ARG SEQRES 6 A 103 PHE THR LEU THR GLY LEU LYS PRO ASP THR THR TYR ASP SEQRES 7 A 103 ILE LYS VAL ARG ALA TRP THR SER LYS GLY SER GLY PRO SEQRES 8 A 103 LEU SER PRO SER ILE GLN SER ARG THR MET PRO VAL SHEET 1 A 2 GLN A 13 HIS A 16 0 SHEET 2 A 2 ALA A 28 ASP A 30 -1 O ASP A 30 N GLN A 13 SHEET 1 B 2 THR A 25 GLU A 26 0 SHEET 2 B 2 THR A 67 LEU A 68 -1 O LEU A 68 N THR A 25 SHEET 1 C 3 GLU A 56 THR A 61 0 SHEET 2 C 3 SER A 43 ASP A 50 -1 N PHE A 48 O LEU A 57 SHEET 3 C 3 TYR A 77 LYS A 80 -1 O ASP A 78 N ARG A 49 SHEET 1 D 3 GLU A 56 THR A 61 0 SHEET 2 D 3 SER A 43 ASP A 50 -1 N PHE A 48 O LEU A 57 SHEET 3 D 3 ALA A 83 TRP A 84 -1 O TRP A 84 N SER A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1