HEADER METAL BINDING PROTEIN 15-FEB-07 2EEI TITLE SOLUTION STRUCTURE OF SECOND PDZ DOMAIN OF PDZ DOMAIN CONTAINING TITLE 2 PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: CFTR-ASSOCIATED PROTEIN OF 70 KDA, NA/PI COTRANSPORTER C- COMPND 6 TERMINAL-ASSOCIATED PROTEIN, NAPI-CAP1, NA(+)/H(+) EXCHANGER COMPND 7 REGULATORY FACTOR 3, SODIUM-HYDROGEN EXCHANGER REGULATORY FACTOR 3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDZK1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050905-17; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, REGULATORY FACTOR, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.N.NIRAULA,T.TOMIZAWA,K.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EEI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EEI 1 VERSN REVDAT 1 26-FEB-08 2EEI 0 JRNL AUTH T.N.NIRAULA,T.TOMIZAWA,K.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF SECOND PDZ DOMAIN OF PDZ DOMAIN JRNL TITL 2 CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EEI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026565. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.36MM PDZ DOMAIN U-13C,15N; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D20, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 17 -56.97 -131.80 REMARK 500 1 TYR A 21 176.48 -50.21 REMARK 500 1 GLN A 42 43.64 34.41 REMARK 500 1 GLU A 58 145.07 -173.84 REMARK 500 1 ASN A 60 29.17 47.51 REMARK 500 1 SER A 79 -39.11 -36.22 REMARK 500 1 HIS A 96 95.99 -64.33 REMARK 500 1 GLN A 99 88.92 -51.26 REMARK 500 2 GLU A 17 -57.21 -121.69 REMARK 500 2 TYR A 21 -73.15 -42.92 REMARK 500 2 PHE A 23 176.11 -56.55 REMARK 500 2 GLN A 29 41.87 -82.05 REMARK 500 2 THR A 40 127.52 -37.86 REMARK 500 2 ASP A 53 28.06 39.86 REMARK 500 2 LYS A 94 41.33 -82.12 REMARK 500 2 SER A 105 -52.54 -127.17 REMARK 500 3 LYS A 16 104.17 -49.51 REMARK 500 3 GLU A 17 -63.33 -101.70 REMARK 500 3 TYR A 21 167.08 -48.96 REMARK 500 3 HIS A 55 102.61 -54.67 REMARK 500 3 VAL A 73 -31.28 -39.69 REMARK 500 3 ARG A 95 95.17 -69.48 REMARK 500 4 LYS A 16 85.81 -62.47 REMARK 500 4 SER A 20 -68.77 -105.93 REMARK 500 4 THR A 40 135.93 -33.74 REMARK 500 4 GLN A 42 40.50 33.85 REMARK 500 4 ASN A 63 105.43 -55.77 REMARK 500 4 SER A 81 -52.07 -121.28 REMARK 500 4 ASP A 93 118.31 -35.28 REMARK 500 5 SER A 6 -63.09 -95.51 REMARK 500 5 PRO A 9 -168.90 -69.83 REMARK 500 5 TYR A 21 174.16 -52.14 REMARK 500 5 LYS A 31 -177.03 -68.85 REMARK 500 5 ASP A 53 31.28 38.89 REMARK 500 5 HIS A 55 108.73 -52.13 REMARK 500 5 ASN A 63 101.39 -54.18 REMARK 500 5 VAL A 73 -34.86 -37.01 REMARK 500 5 ARG A 95 91.25 -65.94 REMARK 500 5 SER A 105 -61.66 -97.03 REMARK 500 6 PRO A 9 -168.49 -69.76 REMARK 500 6 LYS A 16 106.66 -44.35 REMARK 500 6 GLU A 17 -62.07 -103.25 REMARK 500 6 TYR A 21 -175.69 -53.92 REMARK 500 6 ALA A 45 -72.99 -71.39 REMARK 500 6 ASP A 53 29.24 47.24 REMARK 500 6 VAL A 73 -35.64 -35.16 REMARK 500 6 ARG A 95 130.94 -174.82 REMARK 500 6 HIS A 96 45.77 -81.20 REMARK 500 6 SER A 101 98.68 -34.65 REMARK 500 6 PRO A 103 2.76 -69.74 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EEJ RELATED DB: PDB REMARK 900 DIFFERENT DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: HSS001001614.1 RELATED DB: TARGETDB DBREF 2EEI A 8 100 UNP Q5T2W1 PDZD1_HUMAN 132 224 SEQADV 2EEI GLY A 1 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 2 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 3 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI GLY A 4 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 5 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 6 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI GLY A 7 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 101 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI GLY A 102 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI PRO A 103 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 104 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 105 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI GLY A 106 UNP Q5T2W1 EXPRESSION TAG SEQRES 1 A 106 GLY SER SER GLY SER SER GLY GLN PRO ARG LEU CYS TYR SEQRES 2 A 106 LEU VAL LYS GLU GLY GLY SER TYR GLY PHE SER LEU LYS SEQRES 3 A 106 THR VAL GLN GLY LYS LYS GLY VAL TYR MET THR ASP ILE SEQRES 4 A 106 THR PRO GLN GLY VAL ALA MET ARG ALA GLY VAL LEU ALA SEQRES 5 A 106 ASP ASP HIS LEU ILE GLU VAL ASN GLY GLU ASN VAL GLU SEQRES 6 A 106 ASP ALA SER HIS GLU GLU VAL VAL GLU LYS VAL LYS LYS SEQRES 7 A 106 SER GLY SER ARG VAL MET PHE LEU LEU VAL ASP LYS GLU SEQRES 8 A 106 THR ASP LYS ARG HIS VAL GLU GLN LYS SER GLY PRO SER SEQRES 9 A 106 SER GLY HELIX 1 1 GLY A 43 GLY A 49 1 7 HELIX 2 2 SER A 68 GLY A 80 1 13 SHEET 1 A 5 ARG A 10 VAL A 15 0 SHEET 2 A 5 ARG A 82 LEU A 87 -1 O PHE A 85 N CYS A 12 SHEET 3 A 5 ASP A 54 VAL A 59 -1 N ILE A 57 O LEU A 86 SHEET 4 A 5 TYR A 35 MET A 36 -1 N MET A 36 O ASP A 54 SHEET 5 A 5 LEU A 25 LYS A 26 -1 N LYS A 26 O TYR A 35 SHEET 1 B 4 ARG A 10 VAL A 15 0 SHEET 2 B 4 ARG A 82 LEU A 87 -1 O PHE A 85 N CYS A 12 SHEET 3 B 4 ASP A 54 VAL A 59 -1 N ILE A 57 O LEU A 86 SHEET 4 B 4 GLU A 62 ASN A 63 -1 O GLU A 62 N VAL A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1