HEADER STRUCTURAL PROTEIN 06-MAR-07 2EHE TITLE SOLUTION STRUCTURE OF THE FIRST LIM DOMAIN FROM HUMAN FOUR AND A HALF TITLE 2 LIM DOMAINS PROTEIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOUR AND A HALF LIM DOMAINS 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN; COMPND 5 SYNONYM: FHL-3, SKELETAL MUSCLE LIM- PROTEIN 2, SLIM 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FHL3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060911-22; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS LIM DOMAIN, FOUR AND A HALF LIM DOMAINS PROTEIN 3, FHL-3, SKELETAL KEYWDS 2 MUSCLE LIM- PROTEIN 2, SLIM 2, FHL3, SLIM2, STRUCTURAL GENOMICS, KEYWDS 3 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EHE 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2EHE 1 VERSN REVDAT 1 11-SEP-07 2EHE 0 JRNL AUTH K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST LIM DOMAIN FROM HUMAN FOUR JRNL TITL 2 AND A HALF LIM DOMAINS PROTEIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EHE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000026667. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 50UM ZNCL2+1MM IDA; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060324, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9807, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -177.89 -69.37 REMARK 500 1 PRO A 8 -164.70 -69.88 REMARK 500 1 ASN A 12 70.76 -115.77 REMARK 500 1 CYS A 18 130.46 -34.73 REMARK 500 1 ASP A 28 39.87 37.22 REMARK 500 1 LEU A 32 53.13 -115.74 REMARK 500 1 GLU A 41 -30.65 -36.52 REMARK 500 1 CYS A 43 -26.31 -39.15 REMARK 500 1 CYS A 46 131.56 -37.72 REMARK 500 1 LEU A 53 60.35 -114.91 REMARK 500 1 SER A 63 33.62 34.42 REMARK 500 2 PRO A 8 -172.20 -69.78 REMARK 500 2 PHE A 14 57.26 -101.38 REMARK 500 2 ASN A 16 95.44 -41.80 REMARK 500 2 CYS A 18 136.85 -35.37 REMARK 500 2 GLU A 20 -62.21 -109.23 REMARK 500 2 ASP A 28 40.28 -94.15 REMARK 500 2 LEU A 32 58.78 -106.45 REMARK 500 2 ASP A 36 -72.68 -74.51 REMARK 500 2 HIS A 40 -175.75 -65.01 REMARK 500 2 ARG A 48 -36.41 -131.59 REMARK 500 2 GLN A 50 47.95 35.86 REMARK 500 2 GLN A 61 -50.25 -122.21 REMARK 500 2 ASP A 62 137.60 -175.01 REMARK 500 2 SER A 63 33.27 34.39 REMARK 500 2 SER A 76 -176.56 -68.54 REMARK 500 2 SER A 77 41.75 38.26 REMARK 500 2 PRO A 79 97.90 -69.74 REMARK 500 2 SER A 81 -73.45 -37.49 REMARK 500 3 SER A 3 154.80 -44.48 REMARK 500 3 TYR A 10 -71.12 -106.19 REMARK 500 3 ASN A 16 145.53 -38.05 REMARK 500 3 ARG A 30 145.62 -39.53 REMARK 500 3 PHE A 33 126.16 -39.04 REMARK 500 3 ARG A 48 -52.92 -129.42 REMARK 500 3 LEU A 53 60.17 -112.64 REMARK 500 3 SER A 63 51.51 34.40 REMARK 500 3 GLU A 64 133.98 -174.87 REMARK 500 3 CYS A 72 41.25 -94.29 REMARK 500 4 TYR A 10 100.38 -57.04 REMARK 500 4 THR A 13 108.91 -42.63 REMARK 500 4 ASN A 16 144.01 -39.26 REMARK 500 4 GLU A 20 -64.56 -109.91 REMARK 500 4 ASP A 36 -73.92 -82.09 REMARK 500 4 PHE A 44 76.41 -69.27 REMARK 500 4 CYS A 46 151.99 -41.88 REMARK 500 4 ASP A 62 109.92 -167.55 REMARK 500 4 SER A 63 40.08 35.45 REMARK 500 4 CYS A 72 38.08 -86.07 REMARK 500 4 SER A 73 161.17 -44.28 REMARK 500 REMARK 500 THIS ENTRY HAS 296 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 107.2 REMARK 620 3 HIS A 40 ND1 109.4 108.7 REMARK 620 4 CYS A 43 SG 111.4 104.3 115.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 CYS A 49 SG 110.1 REMARK 620 3 CYS A 67 SG 110.8 105.6 REMARK 620 4 CYS A 70 SG 111.9 108.7 109.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002003711.4 RELATED DB: TARGETDB DBREF 2EHE A 8 76 UNP Q9BVA2 Q9BVA2_HUMAN 30 98 SEQADV 2EHE GLY A 1 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE SER A 2 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE SER A 3 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE GLY A 4 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE SER A 5 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE SER A 6 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE GLY A 7 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE SER A 77 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE GLY A 78 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE PRO A 79 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE SER A 80 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE SER A 81 UNP Q9BVA2 EXPRESSION TAG SEQADV 2EHE GLY A 82 UNP Q9BVA2 EXPRESSION TAG SEQRES 1 A 82 GLY SER SER GLY SER SER GLY PRO CYS TYR ASP ASN THR SEQRES 2 A 82 PHE ALA ASN THR CYS ALA GLU CYS GLN GLN LEU ILE GLY SEQRES 3 A 82 HIS ASP SER ARG GLU LEU PHE TYR GLU ASP ARG HIS PHE SEQRES 4 A 82 HIS GLU GLY CYS PHE ARG CYS CYS ARG CYS GLN ARG SER SEQRES 5 A 82 LEU ALA ASP GLU PRO PHE THR CYS GLN ASP SER GLU LEU SEQRES 6 A 82 LEU CYS ASN ASP CYS TYR CYS SER ALA PHE SER SER GLY SEQRES 7 A 82 PRO SER SER GLY HET ZN A 200 1 HET ZN A 300 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ALA A 74 GLY A 78 5 5 SHEET 1 A 2 PHE A 58 GLN A 61 0 SHEET 2 A 2 GLU A 64 CYS A 67 -1 O LEU A 66 N THR A 59 LINK SG CYS A 18 ZN ZN A 200 1555 1555 2.33 LINK SG CYS A 21 ZN ZN A 200 1555 1555 2.31 LINK ND1 HIS A 40 ZN ZN A 200 1555 1555 2.01 LINK SG CYS A 43 ZN ZN A 200 1555 1555 2.32 LINK SG CYS A 46 ZN ZN A 300 1555 1555 2.30 LINK SG CYS A 49 ZN ZN A 300 1555 1555 2.34 LINK SG CYS A 67 ZN ZN A 300 1555 1555 2.33 LINK SG CYS A 70 ZN ZN A 300 1555 1555 2.28 SITE 1 AC1 4 CYS A 18 CYS A 21 HIS A 40 CYS A 43 SITE 1 AC2 4 CYS A 46 CYS A 49 CYS A 67 CYS A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1