HEADER IMMUNE SYSTEM 06-MAR-07 2EHF TITLE SOLUTION STRUCTURE OF THE THIRD SUSHI DOMAIN FROM HUMAN CUB AND SUSHI TITLE 2 DOMAIN-CONTAINING PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUB AND SUSHI DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUSHI DOMAIN; COMPND 5 SYNONYM: CUB AND SUSHI MULTIPLE DOMAINS PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSMD1, KIAA1890; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060731-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SUSHI DOMAIN, CUB AND SUSHI DOMAIN-CONTAINING PROTEIN 1 PRECURSOR, KEYWDS 2 CUB AND SUSHI MULTIPLE DOMAINS PROTEIN 1, CSMD1, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EHF 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EHF 1 VERSN REVDAT 1 11-SEP-07 2EHF 0 JRNL AUTH K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD SUSHI DOMAIN FROM HUMAN CUB JRNL TITL 2 AND SUSHI DOMAIN-CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EHF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000026668. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.11MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060324, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9807, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 14 -75.51 -37.06 REMARK 500 1 PRO A 17 2.17 -69.79 REMARK 500 1 ALA A 21 30.50 -95.22 REMARK 500 1 PRO A 41 -165.43 -69.75 REMARK 500 1 CYS A 54 155.11 -48.86 REMARK 500 1 GLN A 56 29.01 41.15 REMARK 500 1 ASN A 58 29.86 49.02 REMARK 500 1 PRO A 65 -163.84 -69.74 REMARK 500 1 SER A 68 126.46 -172.46 REMARK 500 1 PRO A 70 -164.50 -69.83 REMARK 500 2 SER A 2 34.32 34.86 REMARK 500 2 ALA A 21 31.38 -94.55 REMARK 500 2 TYR A 22 -57.17 -134.32 REMARK 500 2 ALA A 42 172.86 -46.45 REMARK 500 2 ASN A 57 42.77 -97.52 REMARK 500 2 ASN A 58 42.81 35.64 REMARK 500 2 PRO A 65 -172.68 -69.77 REMARK 500 3 SER A 5 49.60 -77.65 REMARK 500 3 GLU A 8 75.39 -67.96 REMARK 500 3 CYS A 14 37.34 -88.26 REMARK 500 3 TYR A 22 107.46 -174.82 REMARK 500 3 HIS A 32 83.16 -68.52 REMARK 500 3 PRO A 41 -164.45 -69.75 REMARK 500 3 SER A 68 155.25 -39.13 REMARK 500 4 ILE A 9 73.24 -106.63 REMARK 500 4 LYS A 11 94.74 -58.99 REMARK 500 4 CYS A 14 -74.59 -79.44 REMARK 500 4 PRO A 17 2.73 -69.80 REMARK 500 4 ALA A 21 131.65 -39.27 REMARK 500 4 SER A 28 31.47 -84.79 REMARK 500 4 ASN A 57 46.08 -83.65 REMARK 500 4 ASN A 58 27.50 38.51 REMARK 500 4 LYS A 64 145.30 -36.56 REMARK 500 4 SER A 68 -71.94 -121.06 REMARK 500 5 SER A 6 64.42 -107.71 REMARK 500 5 PRO A 20 -164.35 -69.77 REMARK 500 5 HIS A 32 73.96 -64.27 REMARK 500 5 PRO A 41 65.26 -69.71 REMARK 500 5 ALA A 42 39.47 34.41 REMARK 500 5 ALA A 43 -40.28 -133.06 REMARK 500 5 VAL A 47 72.87 -119.31 REMARK 500 5 ASN A 58 49.71 37.34 REMARK 500 5 PRO A 65 -163.85 -69.67 REMARK 500 5 PRO A 70 -173.38 -69.77 REMARK 500 6 LYS A 11 93.55 -57.73 REMARK 500 6 ALA A 42 170.61 -56.69 REMARK 500 7 GLU A 8 152.32 -43.82 REMARK 500 7 CYS A 14 -70.42 -108.62 REMARK 500 7 ASP A 16 80.02 -152.82 REMARK 500 7 PRO A 17 2.97 -69.77 REMARK 500 REMARK 500 THIS ENTRY HAS 168 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001554.4 RELATED DB: TARGETDB DBREF 2EHF A 8 67 UNP Q96PZ7 CSMD1_HUMAN 522 581 SEQADV 2EHF GLY A 1 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF SER A 2 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF SER A 3 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF GLY A 4 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF SER A 5 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF SER A 6 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF GLY A 7 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF SER A 68 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF GLY A 69 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF PRO A 70 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF SER A 71 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF SER A 72 UNP Q96PZ7 EXPRESSION TAG SEQADV 2EHF GLY A 73 UNP Q96PZ7 EXPRESSION TAG SEQRES 1 A 73 GLY SER SER GLY SER SER GLY GLU ILE GLU LYS GLY GLY SEQRES 2 A 73 CYS GLY ASP PRO GLY ILE PRO ALA TYR GLY LYS ARG THR SEQRES 3 A 73 GLY SER SER PHE LEU HIS GLY ASP THR LEU THR PHE GLU SEQRES 4 A 73 CYS PRO ALA ALA PHE GLU LEU VAL GLY GLU ARG VAL ILE SEQRES 5 A 73 THR CYS GLN GLN ASN ASN GLN TRP SER GLY ASN LYS PRO SEQRES 6 A 73 SER CYS SER GLY PRO SER SER GLY SHEET 1 A 3 LYS A 24 THR A 26 0 SHEET 2 A 3 THR A 35 GLU A 39 -1 O GLU A 39 N LYS A 24 SHEET 3 A 3 VAL A 51 THR A 53 -1 O ILE A 52 N LEU A 36 SSBOND 1 CYS A 14 CYS A 54 1555 1555 2.02 SSBOND 2 CYS A 40 CYS A 67 1555 1555 2.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1