HEADER OXIDOREDUCTASE 10-MAR-07 2EI0 TITLE ANAEROBIC CRYSTAL STRUCTURE ANALYSIS OF 1,2-DIHYDROXYNAPHTHALENE TITLE 2 DIOXYGENASE FROM PSEUDOMONAS SP. STRAIN C18 COMPLEXED WITH 3,4- TITLE 3 DIHYDROXYBIPHENYL COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,2-DIHYDROXYNAPHTHALENE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 69011; SOURCE 4 STRAIN: C18; SOURCE 5 GENE: DOXG; SOURCE 6 EXPRESSION_SYSTEM: PSEUDOMONAS PUTIDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 303; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KT2442; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHMPVDG KEYWDS EXTRADIOL DIOXYGENASE, PROTEIN SUBSTRATE COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.B.NEAU,M.S.KELKER,C.L.COLBERT,J.T.BOLIN REVDAT 4 25-OCT-23 2EI0 1 REMARK LINK REVDAT 3 13-JUL-11 2EI0 1 VERSN REVDAT 2 24-FEB-09 2EI0 1 VERSN REVDAT 1 19-FEB-08 2EI0 0 JRNL AUTH D.B.NEAU,M.S.KELKER,H.MAAROUFI,C.L.COLBERT,L.D.ELTIS, JRNL AUTH 2 J.T.BOLIN JRNL TITL STRUCTURAL EXPLANATION FOR SUCCESS AND FAILURE IN THE JRNL TITL 2 ENZYMATIC RING-CLEAVAGE OF 3,4 DIHYDROXYBIPHENYL AND RELATED JRNL TITL 3 PCB METABOLITES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 49031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3067 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.259 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2375 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3214 ; 1.169 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 5.862 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;31.867 ;23.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;11.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1871 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1092 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1585 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1452 ; 0.636 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2244 ; 0.967 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1080 ; 1.527 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 970 ; 2.355 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5270 37.0600 16.0550 REMARK 3 T TENSOR REMARK 3 T11: 0.0550 T22: -0.0169 REMARK 3 T33: 0.0648 T12: -0.0076 REMARK 3 T13: -0.0289 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.7513 L22: 0.8500 REMARK 3 L33: 0.8515 L12: 0.2326 REMARK 3 L13: -0.0329 L23: -0.1126 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.0706 S13: 0.1558 REMARK 3 S21: 0.0771 S22: -0.0173 S23: -0.0462 REMARK 3 S31: -0.1916 S32: -0.0321 S33: 0.0495 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9950 27.8120 24.9640 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0206 REMARK 3 T33: 0.0324 T12: -0.0099 REMARK 3 T13: -0.0222 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 0.5182 L22: 0.3001 REMARK 3 L33: 0.5400 L12: -0.1396 REMARK 3 L13: 0.1386 L23: -0.1728 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.1046 S13: 0.0687 REMARK 3 S21: 0.0672 S22: 0.0024 S23: -0.0232 REMARK 3 S31: -0.0814 S32: -0.0513 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9580 23.4060 13.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0166 REMARK 3 T33: 0.0665 T12: -0.0299 REMARK 3 T13: -0.0268 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.4503 L22: 0.5184 REMARK 3 L33: 0.3884 L12: -0.2612 REMARK 3 L13: 0.0379 L23: -0.1367 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0155 S13: 0.0698 REMARK 3 S21: 0.0171 S22: -0.0261 S23: -0.1175 REMARK 3 S31: -0.0444 S32: 0.0655 S33: 0.0321 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6570 29.2160 14.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.1434 T22: 0.1626 REMARK 3 T33: 0.1959 T12: -0.1275 REMARK 3 T13: -0.0681 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 0.3674 L22: 0.5298 REMARK 3 L33: 3.4551 L12: -0.4406 REMARK 3 L13: 0.7263 L23: -0.8156 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: -0.3899 S13: 0.2993 REMARK 3 S21: 0.0579 S22: -0.4826 S23: -0.1506 REMARK 3 S31: -0.4243 S32: 1.0650 S33: 0.4290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2EI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000026689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49031 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.73800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1HAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M NACL, 0.1M MGCL2, 0.1M HEPES, REMARK 280 ANAEROBIC CRYSTALLIZATION, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.93500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 58.93500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.79700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 58.93500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 58.93500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 60.79700 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 58.93500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 58.93500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 60.79700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 58.93500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 58.93500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 60.79700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 58.93500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.93500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 60.79700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 58.93500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.93500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 60.79700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 58.93500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 58.93500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 60.79700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.93500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 58.93500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.79700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 34090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -379.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 182 REMARK 465 PRO A 183 REMARK 465 ASN A 184 REMARK 465 GLY A 185 REMARK 465 MET A 186 REMARK 465 GLY A 296 REMARK 465 LEU A 297 REMARK 465 ASP A 298 REMARK 465 VAL A 299 REMARK 465 LYS A 300 REMARK 465 LEU A 301 REMARK 465 SER A 302 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 41 CG CD CE NZ REMARK 480 LYS A 91 CD CE NZ REMARK 480 LYS A 97 CD CE NZ REMARK 480 GLN A 101 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 6 -127.85 -138.69 REMARK 500 ASP A 49 -154.32 -171.68 REMARK 500 LYS A 142 -158.75 -150.21 REMARK 500 THR A 145 -108.09 -131.93 REMARK 500 ASP A 175 -158.50 -154.49 REMARK 500 ASN A 196 -166.32 -172.46 REMARK 500 ARG A 270 47.23 72.18 REMARK 500 GLU A 291 -81.04 -120.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 399 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 152 NE2 REMARK 620 2 HIS A 215 NE2 103.5 REMARK 620 3 GLU A 266 OE1 99.4 88.4 REMARK 620 4 BP7 A 400 OA4 83.3 149.3 120.4 REMARK 620 5 BP7 A 400 OA3 144.2 81.7 116.2 76.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BP7 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BP7 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BP7 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EHZ RELATED DB: PDB REMARK 900 RELATED ID: 2EI1 RELATED DB: PDB REMARK 900 RELATED ID: 2EI2 RELATED DB: PDB REMARK 900 RELATED ID: 2EI3 RELATED DB: PDB DBREF 2EI0 A 1 302 UNP P0A108 NAHC_PSEU8 1 302 SEQRES 1 A 302 MET SER LYS GLN ALA ALA VAL ILE GLU LEU GLY TYR MET SEQRES 2 A 302 GLY ILE SER VAL LYS ASP PRO ASP ALA TRP LYS SER PHE SEQRES 3 A 302 ALA THR ASP MET LEU GLY LEU GLN VAL LEU ASP GLU GLY SEQRES 4 A 302 GLU LYS ASP ARG PHE TYR LEU ARG MET ASP TYR TRP HIS SEQRES 5 A 302 HIS ARG ILE VAL VAL HIS HIS ASN GLY GLN ASP ASP LEU SEQRES 6 A 302 GLU TYR LEU GLY TRP ARG VAL ALA GLY LYS PRO GLU PHE SEQRES 7 A 302 GLU ALA LEU GLY GLN LYS LEU ILE ASP ALA GLY TYR LYS SEQRES 8 A 302 ILE ARG ILE CYS ASP LYS VAL GLU ALA GLN GLU ARG MET SEQRES 9 A 302 VAL LEU GLY LEU MET LYS THR GLU ASP PRO GLY GLY ASN SEQRES 10 A 302 PRO THR GLU ILE PHE TRP GLY PRO ARG ILE ASP MET SER SEQRES 11 A 302 ASN PRO PHE HIS PRO GLY ARG PRO LEU HIS GLY LYS PHE SEQRES 12 A 302 VAL THR GLY ASP GLN GLY LEU GLY HIS CYS ILE VAL ARG SEQRES 13 A 302 GLN THR ASP VAL ALA GLU ALA HIS LYS PHE TYR SER LEU SEQRES 14 A 302 LEU GLY PHE ARG GLY ASP VAL GLU TYR ARG ILE PRO LEU SEQRES 15 A 302 PRO ASN GLY MET THR ALA GLU LEU SER PHE MET HIS CYS SEQRES 16 A 302 ASN ALA ARG ASP HIS SER ILE ALA PHE GLY ALA MET PRO SEQRES 17 A 302 ALA ALA LYS ARG LEU ASN HIS LEU MET LEU GLU TYR THR SEQRES 18 A 302 HIS MET GLU ASP LEU GLY TYR THR HIS GLN GLN PHE VAL SEQRES 19 A 302 LYS ASN GLU ILE ASP ILE ALA LEU GLN LEU GLY ILE HIS SEQRES 20 A 302 ALA ASN ASP LYS ALA LEU THR PHE TYR GLY ALA THR PRO SEQRES 21 A 302 SER GLY TRP LEU ILE GLU PRO GLY TRP ARG GLY ALA THR SEQRES 22 A 302 ALA ILE ASP GLU ALA GLU TYR TYR VAL GLY ASP ILE PHE SEQRES 23 A 302 GLY HIS GLY VAL GLU ALA THR GLY TYR GLY LEU ASP VAL SEQRES 24 A 302 LYS LEU SER HET FE2 A 399 1 HET MG A 398 1 HET BP7 A 400 14 HET BP7 A 401 14 HET BP7 A 402 14 HET GOL A 901 6 HETNAM FE2 FE (II) ION HETNAM MG MAGNESIUM ION HETNAM BP7 1,1'-BIPHENYL-3,4-DIOL HETNAM GOL GLYCEROL HETSYN BP7 3,4-DIHYDROXYBIPHENYL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE2 FE 2+ FORMUL 3 MG MG 2+ FORMUL 4 BP7 3(C12 H10 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *349(H2 O) HELIX 1 1 ASP A 19 MET A 30 1 12 HELIX 2 2 GLY A 74 ALA A 88 1 15 HELIX 3 3 ASP A 96 MET A 104 1 9 HELIX 4 4 THR A 145 GLY A 149 5 5 HELIX 5 5 ASP A 159 LEU A 170 1 12 HELIX 6 6 HIS A 222 ASN A 236 1 15 SHEET 1 A 8 GLN A 34 LEU A 36 0 SHEET 2 A 8 ARG A 43 ARG A 47 -1 O TYR A 45 N LEU A 36 SHEET 3 A 8 ILE A 55 HIS A 58 -1 O VAL A 57 N PHE A 44 SHEET 4 A 8 VAL A 7 SER A 16 1 N ILE A 15 O HIS A 58 SHEET 5 A 8 ASP A 64 VAL A 72 -1 O ARG A 71 N ILE A 8 SHEET 6 A 8 PRO A 118 PRO A 125 1 O GLU A 120 N TRP A 70 SHEET 7 A 8 VAL A 105 GLU A 112 -1 N THR A 111 O THR A 119 SHEET 8 A 8 ARG A 93 ILE A 94 -1 N ARG A 93 O LYS A 110 SHEET 1 B 9 VAL A 176 ILE A 180 0 SHEET 2 B 9 ALA A 188 MET A 193 -1 O ALA A 188 N ILE A 180 SHEET 3 B 9 ILE A 202 PHE A 204 -1 O ILE A 202 N MET A 193 SHEET 4 B 9 HIS A 152 VAL A 155 1 N VAL A 155 O ALA A 203 SHEET 5 B 9 LEU A 213 TYR A 220 -1 O MET A 217 N HIS A 152 SHEET 6 B 9 LEU A 264 TRP A 269 1 O GLU A 266 N LEU A 216 SHEET 7 B 9 LEU A 253 ALA A 258 -1 N GLY A 257 O ILE A 265 SHEET 8 B 9 ILE A 240 ILE A 246 -1 N GLY A 245 O THR A 254 SHEET 9 B 9 PHE A 286 GLY A 287 -1 O PHE A 286 N ILE A 246 LINK NE2 HIS A 152 FE FE2 A 399 1555 1555 2.20 LINK NE2 HIS A 215 FE FE2 A 399 1555 1555 2.18 LINK OE1 GLU A 266 FE FE2 A 399 1555 1555 2.01 LINK FE FE2 A 399 OA4 BP7 A 400 1555 1555 2.32 LINK FE FE2 A 399 OA3 BP7 A 400 1555 1555 2.16 SITE 1 AC1 5 HIS A 152 HIS A 215 TYR A 256 GLU A 266 SITE 2 AC1 5 BP7 A 400 SITE 1 AC2 6 GLU A 177 HOH A 903 HOH A 904 HOH A 905 SITE 2 AC2 6 HOH A 906 HOH A 907 SITE 1 AC3 12 HIS A 152 TYR A 178 LEU A 190 PHE A 192 SITE 2 AC3 12 HIS A 200 HIS A 215 HIS A 247 ASN A 249 SITE 3 AC3 12 TYR A 256 GLU A 266 ASP A 284 FE2 A 399 SITE 1 AC4 7 ILE A 154 PHE A 192 PHE A 204 MET A 207 SITE 2 AC4 7 ASN A 214 HOH A1066 HOH A1144 SITE 1 AC5 8 GLY A 171 ARG A 173 HIS A 194 CYS A 195 SITE 2 AC5 8 ASN A 196 ALA A 197 ASP A 276 HOH A1174 SITE 1 AC6 8 TYR A 12 TRP A 51 HIS A 52 HIS A 53 SITE 2 AC6 8 ARG A 103 MET A 104 PRO A 125 ARG A 126 CRYST1 117.870 117.870 121.594 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008484 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008224 0.00000