HEADER OXIDOREDUCTASE 10-MAR-07 2EI1 TITLE ANAEROBIC CRYSTAL STRUCTURE ANALYSIS OF THE 1,2-DIHYDROXYNAPHTHALENE TITLE 2 DIOXYGEANSE OF PSEUDOMONAS SP. STRAIN C18 COMPLEXES TO 1,2- TITLE 3 DIHYDROXYNAPHTHALENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,2-DIHYDROXYNAPHTHALENE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 69011; SOURCE 4 STRAIN: C18; SOURCE 5 GENE: DOXG; SOURCE 6 EXPRESSION_SYSTEM: PSEUDOMONAS PUTIDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 303; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KT2442; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHMPVDG KEYWDS EXTRADIOL DIOXYGENASE, PROTEIN SUBSTRATE COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.B.NEAU,M.S.KELKER,C.L.COLBERT,J.T.BOLIN REVDAT 5 25-OCT-23 2EI1 1 REMARK REVDAT 4 09-SEP-20 2EI1 1 TITLE REMARK LINK REVDAT 3 13-JUL-11 2EI1 1 VERSN REVDAT 2 24-FEB-09 2EI1 1 VERSN REVDAT 1 19-FEB-08 2EI1 0 JRNL AUTH D.B.NEAU,M.S.KELKER,H.MAAROUFI,C.L.COLBERT,L.D.ELTIS, JRNL AUTH 2 J.T.BOLIN JRNL TITL STRUCTURAL EXPLANATION FOR SUCCESS AND FAILURE IN THE JRNL TITL 2 ENZYMATIC RING-CLEAVAGE OF 3,4 DIHYDROXYBIPHENYL AND RELATED JRNL TITL 3 PCB METABOLITES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 60838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3252 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 231 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.836 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2396 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3241 ; 1.251 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 6.247 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;31.940 ;23.644 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 381 ;11.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.003 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1863 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1033 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1597 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 211 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1488 ; 0.686 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2301 ; 1.004 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1067 ; 1.517 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 940 ; 2.262 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5271 37.0598 16.0554 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: -0.0368 REMARK 3 T33: 0.0737 T12: -0.0070 REMARK 3 T13: -0.0533 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.8569 L22: 0.4838 REMARK 3 L33: 0.7419 L12: 0.2806 REMARK 3 L13: 0.0012 L23: -0.0338 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.0750 S13: 0.2190 REMARK 3 S21: 0.0262 S22: -0.0241 S23: -0.0376 REMARK 3 S31: -0.1889 S32: -0.0308 S33: 0.0753 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9953 27.8121 24.9641 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0082 REMARK 3 T33: 0.0192 T12: -0.0122 REMARK 3 T13: -0.0420 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 0.5448 L22: 0.3872 REMARK 3 L33: 0.4797 L12: -0.0792 REMARK 3 L13: 0.0924 L23: -0.0777 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.1227 S13: 0.0971 REMARK 3 S21: 0.0969 S22: -0.0037 S23: -0.0223 REMARK 3 S31: -0.0915 S32: -0.0389 S33: 0.0245 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9583 23.4063 13.9435 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0021 REMARK 3 T33: 0.0549 T12: -0.0389 REMARK 3 T13: -0.0460 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.4264 L22: 0.4154 REMARK 3 L33: 0.5815 L12: -0.1909 REMARK 3 L13: -0.0134 L23: 0.0159 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -0.0388 S13: 0.0701 REMARK 3 S21: 0.0144 S22: -0.0219 S23: -0.1224 REMARK 3 S31: -0.0795 S32: 0.0940 S33: 0.0350 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6575 29.2159 14.1842 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.2026 REMARK 3 T33: 0.1997 T12: -0.0028 REMARK 3 T13: -0.0016 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.9172 L22: 8.3401 REMARK 3 L33: 1.1670 L12: 2.5190 REMARK 3 L13: -0.8189 L23: -3.0363 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: -0.8211 S13: 0.2743 REMARK 3 S21: -0.6309 S22: -0.6251 S23: -0.6286 REMARK 3 S31: 0.1916 S32: 0.3141 S33: 0.5252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2EI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000026690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64402 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.63300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1HAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M NACL, 0.1M MGCL2, 0.1M HEPES, REMARK 280 ANAEROBIC CRYSTALLIZATION, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.92400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 58.92400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.48250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 58.92400 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 58.92400 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 60.48250 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 58.92400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 58.92400 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 60.48250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 58.92400 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 58.92400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 60.48250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 58.92400 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.92400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 60.48250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 58.92400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.92400 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 60.48250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 58.92400 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 58.92400 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 60.48250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.92400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 58.92400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.48250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 27530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -229.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1869 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 182 REMARK 465 PRO A 183 REMARK 465 ASN A 184 REMARK 465 GLY A 185 REMARK 465 MET A 186 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 41 CG CD CE NZ REMARK 480 LYS A 91 CD CE NZ REMARK 480 LYS A 97 CD CE NZ REMARK 480 GLN A 101 OE1 NE2 REMARK 480 ASP A 159 OD1 REMARK 480 GLU A 162 OE1 OE2 REMARK 480 LYS A 300 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 298 O HOH A 1769 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 41 CB LYS A 41 CG 0.248 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 41 CA - CB - CG ANGL. DEV. = -15.8 DEGREES REMARK 500 CYS A 153 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -156.35 -173.33 REMARK 500 ASN A 60 69.93 67.72 REMARK 500 LYS A 142 -157.83 -148.83 REMARK 500 THR A 145 -110.97 -133.70 REMARK 500 ASN A 196 -165.22 -169.47 REMARK 500 ARG A 270 47.09 72.12 REMARK 500 GLU A 291 -82.90 -119.30 REMARK 500 ASP A 298 53.12 -92.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 59 ASN A 60 -149.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 399 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 152 NE2 REMARK 620 2 HIS A 215 NE2 103.2 REMARK 620 3 GLU A 266 OE1 98.2 85.0 REMARK 620 4 D1N A1637 O1 151.5 84.2 109.9 REMARK 620 5 D1N A1637 O2 87.1 162.5 107.8 80.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D1N A 1637 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EHZ RELATED DB: PDB REMARK 900 RELATED ID: 2EI0 RELATED DB: PDB REMARK 900 RELATED ID: 2EI2 RELATED DB: PDB REMARK 900 RELATED ID: 2EI3 RELATED DB: PDB DBREF 2EI1 A 1 302 UNP P0A108 NAHC_PSEU8 1 302 SEQRES 1 A 302 MET SER LYS GLN ALA ALA VAL ILE GLU LEU GLY TYR MET SEQRES 2 A 302 GLY ILE SER VAL LYS ASP PRO ASP ALA TRP LYS SER PHE SEQRES 3 A 302 ALA THR ASP MET LEU GLY LEU GLN VAL LEU ASP GLU GLY SEQRES 4 A 302 GLU LYS ASP ARG PHE TYR LEU ARG MET ASP TYR TRP HIS SEQRES 5 A 302 HIS ARG ILE VAL VAL HIS HIS ASN GLY GLN ASP ASP LEU SEQRES 6 A 302 GLU TYR LEU GLY TRP ARG VAL ALA GLY LYS PRO GLU PHE SEQRES 7 A 302 GLU ALA LEU GLY GLN LYS LEU ILE ASP ALA GLY TYR LYS SEQRES 8 A 302 ILE ARG ILE CYS ASP LYS VAL GLU ALA GLN GLU ARG MET SEQRES 9 A 302 VAL LEU GLY LEU MET LYS THR GLU ASP PRO GLY GLY ASN SEQRES 10 A 302 PRO THR GLU ILE PHE TRP GLY PRO ARG ILE ASP MET SER SEQRES 11 A 302 ASN PRO PHE HIS PRO GLY ARG PRO LEU HIS GLY LYS PHE SEQRES 12 A 302 VAL THR GLY ASP GLN GLY LEU GLY HIS CYS ILE VAL ARG SEQRES 13 A 302 GLN THR ASP VAL ALA GLU ALA HIS LYS PHE TYR SER LEU SEQRES 14 A 302 LEU GLY PHE ARG GLY ASP VAL GLU TYR ARG ILE PRO LEU SEQRES 15 A 302 PRO ASN GLY MET THR ALA GLU LEU SER PHE MET HIS CYS SEQRES 16 A 302 ASN ALA ARG ASP HIS SER ILE ALA PHE GLY ALA MET PRO SEQRES 17 A 302 ALA ALA LYS ARG LEU ASN HIS LEU MET LEU GLU TYR THR SEQRES 18 A 302 HIS MET GLU ASP LEU GLY TYR THR HIS GLN GLN PHE VAL SEQRES 19 A 302 LYS ASN GLU ILE ASP ILE ALA LEU GLN LEU GLY ILE HIS SEQRES 20 A 302 ALA ASN ASP LYS ALA LEU THR PHE TYR GLY ALA THR PRO SEQRES 21 A 302 SER GLY TRP LEU ILE GLU PRO GLY TRP ARG GLY ALA THR SEQRES 22 A 302 ALA ILE ASP GLU ALA GLU TYR TYR VAL GLY ASP ILE PHE SEQRES 23 A 302 GLY HIS GLY VAL GLU ALA THR GLY TYR GLY LEU ASP VAL SEQRES 24 A 302 LYS LEU SER HET FE2 A 399 1 HET MG A 398 1 HET D1N A1637 12 HET GOL A 901 6 HETNAM FE2 FE (II) ION HETNAM MG MAGNESIUM ION HETNAM D1N NAPHTHALENE-1,2-DIOL HETNAM GOL GLYCEROL HETSYN D1N 1,2-DIHYDROXYNAPHTHALENE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE2 FE 2+ FORMUL 3 MG MG 2+ FORMUL 4 D1N C10 H8 O2 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *280(H2 O) HELIX 1 1 ASP A 19 MET A 30 1 12 HELIX 2 2 GLY A 74 ALA A 88 1 15 HELIX 3 3 ASP A 96 MET A 104 1 9 HELIX 4 4 THR A 145 GLY A 149 5 5 HELIX 5 5 ASP A 159 LEU A 170 1 12 HELIX 6 6 HIS A 222 ASN A 236 1 15 SHEET 1 A 8 GLN A 34 LEU A 36 0 SHEET 2 A 8 ARG A 43 ARG A 47 -1 O TYR A 45 N LEU A 36 SHEET 3 A 8 ILE A 55 HIS A 59 -1 O VAL A 57 N PHE A 44 SHEET 4 A 8 GLU A 9 VAL A 17 1 N ILE A 15 O HIS A 58 SHEET 5 A 8 ASP A 64 ARG A 71 -1 O GLU A 66 N GLY A 14 SHEET 6 A 8 PRO A 118 PRO A 125 1 O GLU A 120 N TRP A 70 SHEET 7 A 8 VAL A 105 GLU A 112 -1 N THR A 111 O THR A 119 SHEET 8 A 8 ARG A 93 ILE A 94 -1 N ARG A 93 O LYS A 110 SHEET 1 B 9 ARG A 173 ILE A 180 0 SHEET 2 B 9 ALA A 188 HIS A 194 -1 O ALA A 188 N ILE A 180 SHEET 3 B 9 ILE A 202 GLY A 205 -1 O ILE A 202 N MET A 193 SHEET 4 B 9 HIS A 152 VAL A 155 1 N VAL A 155 O ALA A 203 SHEET 5 B 9 LEU A 213 TYR A 220 -1 O MET A 217 N HIS A 152 SHEET 6 B 9 LEU A 264 TRP A 269 1 O GLU A 266 N LEU A 216 SHEET 7 B 9 LEU A 253 ALA A 258 -1 N GLY A 257 O ILE A 265 SHEET 8 B 9 ILE A 240 ILE A 246 -1 N GLY A 245 O THR A 254 SHEET 9 B 9 PHE A 286 GLY A 287 -1 O PHE A 286 N ILE A 246 LINK NE2 HIS A 152 FE FE2 A 399 1555 1555 2.17 LINK NE2 HIS A 215 FE FE2 A 399 1555 1555 2.18 LINK OE1 GLU A 266 FE FE2 A 399 1555 1555 2.09 LINK FE FE2 A 399 O1 D1N A1637 1555 1555 2.02 LINK FE FE2 A 399 O2 D1N A1637 1555 1555 2.15 SITE 1 AC1 5 HIS A 152 HIS A 215 GLU A 266 D1N A1637 SITE 2 AC1 5 HOH A1638 SITE 1 AC2 6 GLU A 177 HOH A1639 HOH A1640 HOH A1641 SITE 2 AC2 6 HOH A1642 HOH A1643 SITE 1 AC3 13 HIS A 152 TYR A 178 LEU A 190 PHE A 192 SITE 2 AC3 13 HIS A 200 HIS A 215 HIS A 247 ASN A 249 SITE 3 AC3 13 TYR A 256 GLU A 266 FE2 A 399 HOH A1638 SITE 4 AC3 13 HOH A1680 SITE 1 AC4 8 TYR A 12 TRP A 51 HIS A 52 HIS A 53 SITE 2 AC4 8 ARG A 103 MET A 104 PRO A 125 ARG A 126 CRYST1 117.848 117.848 120.965 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008267 0.00000