HEADER TRANSFERASE 14-MAR-07 2EIY TITLE CRYSTAL STRUCTURE OF T.TH.HB8 BRANCHED-CHAIN AMINO ACID TITLE 2 AMINOTRANSFERASE COMPLEXED WITH 4-METHYLVALERIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ILVE; COMPND 5 EC: 2.6.1.42; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PLP-DEPENDENT ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GOTO REVDAT 5 25-OCT-23 2EIY 1 REMARK LINK REVDAT 4 11-OCT-17 2EIY 1 REMARK REVDAT 3 13-JUL-11 2EIY 1 VERSN REVDAT 2 24-FEB-09 2EIY 1 VERSN REVDAT 1 18-MAR-08 2EIY 0 JRNL AUTH M.GOTO JRNL TITL CRYSTAL STRUCTURE OF T.TH.HB8 BRANCHED-CHAIN AMINO ACID JRNL TITL 2 AMINOTRANSFERASE COMPLEXED WITH 4-METHYLVALERIC ACID JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3208563.020 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 245220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 24964 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 33253 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 3688 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.004 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 913 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.830 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.250 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 16.520; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.590 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 66.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PLP.PARAM REMARK 3 PARAMETER FILE 5 : 4MV-MPD.PARAM REMARK 3 PARAMETER FILE 6 : ETC.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PLP.TOP REMARK 3 TOPOLOGY FILE 5 : 4MV-MPD.TOP REMARK 3 TOPOLOGY FILE 6 : INTSHIFF.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000026720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 249385 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 24.112 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1WRV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, MPD, NA ACETATE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.27000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.82600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.82600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.13500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.82600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.82600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.40500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.82600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.82600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.13500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.82600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.82600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.40500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 36700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -256.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 143.65200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 143.65200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.27000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 127 REMARK 465 ALA A 128 REMARK 465 TYR A 129 REMARK 465 LEU A 130 REMARK 465 GLY A 131 REMARK 465 GLU A 132 REMARK 465 GLU A 133 REMARK 465 ALA A 134 REMARK 465 GLY A 307 REMARK 465 GLN A 308 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 GLY B 307 REMARK 465 GLN B 308 REMARK 465 MET C 1 REMARK 465 GLN C 2 REMARK 465 GLY C 127 REMARK 465 ALA C 128 REMARK 465 TYR C 129 REMARK 465 LEU C 130 REMARK 465 GLY C 131 REMARK 465 GLU C 132 REMARK 465 GLU C 133 REMARK 465 ALA C 134 REMARK 465 VAL C 135 REMARK 465 ARG C 136 REMARK 465 GLY C 307 REMARK 465 GLN C 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS C 137 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 55.45 39.34 REMARK 500 PRO A 72 32.90 -73.04 REMARK 500 ALA A 104 30.71 -96.92 REMARK 500 ALA A 192 -83.17 -110.08 REMARK 500 SER A 213 -117.95 32.77 REMARK 500 GLU A 259 -127.42 52.94 REMARK 500 PRO B 72 37.34 -75.22 REMARK 500 ARG B 92 -97.48 -104.69 REMARK 500 ALA B 104 31.98 -96.47 REMARK 500 ALA B 192 -84.81 -108.53 REMARK 500 SER B 213 -118.34 33.96 REMARK 500 GLU B 259 -126.72 51.94 REMARK 500 PRO C 72 31.04 -72.81 REMARK 500 ARG C 92 -66.20 -121.65 REMARK 500 ALA C 192 -82.80 -110.17 REMARK 500 SER C 213 -117.38 32.62 REMARK 500 GLU C 259 -126.82 51.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 164 0.08 SIDE CHAIN REMARK 500 TYR B 164 0.09 SIDE CHAIN REMARK 500 TYR C 164 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 913 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP C 1413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4MV A 2414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4MV B 914 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4MV C 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 2416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 2417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 915 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 917 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 1416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EJ0 RELATED DB: PDB REMARK 900 RELATED ID: 2EJ2 RELATED DB: PDB REMARK 900 RELATED ID: 2EJ3 RELATED DB: PDB DBREF 2EIY A 1 308 UNP Q5SM19 Q5SM19_THET8 1 308 DBREF 2EIY B 1 308 UNP Q5SM19 Q5SM19_THET8 1 308 DBREF 2EIY C 1 308 UNP Q5SM19 Q5SM19_THET8 1 308 SEQRES 1 A 308 MET GLN ILE LYS ALA GLY LEU ILE TRP MET ASN GLY ALA SEQRES 2 A 308 PHE VAL PRO GLN GLU GLU ALA LYS THR SER VAL LEU SER SEQRES 3 A 308 HIS ALA LEU HIS TYR GLY THR SER VAL PHE GLU GLY ILE SEQRES 4 A 308 ARG ALA TYR GLU THR ALA LYS GLY PRO ALA ILE PHE ARG SEQRES 5 A 308 LEU LYS GLU HIS VAL LYS ARG PHE TYR ASN SER ALA LYS SEQRES 6 A 308 VAL LEU ARG MET GLU ILE PRO PHE ALA PRO GLU GLU LEU SEQRES 7 A 308 GLU GLU ALA ILE LYS GLU VAL VAL ARG ARG ASN GLY TYR SEQRES 8 A 308 ARG SER CYS TYR ILE ARG PRO LEU ALA TRP MET GLY ALA SEQRES 9 A 308 LYS ALA LEU GLY VAL ASN PRO LEU PRO ASN ASN PRO ALA SEQRES 10 A 308 GLU VAL MET VAL ALA ALA TRP GLU TRP GLY ALA TYR LEU SEQRES 11 A 308 GLY GLU GLU ALA VAL ARG LYS GLY ALA ARG LEU ILE THR SEQRES 12 A 308 SER SER TRP ALA ARG PHE PRO ALA ASN VAL MET PRO GLY SEQRES 13 A 308 LYS ALA LYS VAL GLY GLY ASN TYR VAL ASN SER ALA LEU SEQRES 14 A 308 ALA LYS MET GLU ALA VAL ALA ALA GLY ALA ASP GLU ALA SEQRES 15 A 308 LEU LEU LEU ASP GLU GLU GLY TYR VAL ALA GLU GLY SER SEQRES 16 A 308 GLY GLU ASN LEU PHE PHE VAL ARG ASP GLY VAL ILE TYR SEQRES 17 A 308 ALA LEU GLU HIS SER VAL ASN LEU GLU GLY ILE THR ARG SEQRES 18 A 308 ASP SER VAL ILE ARG ILE ALA LYS ASP LEU GLY TYR GLU SEQRES 19 A 308 VAL GLN VAL VAL ARG ALA THR ARG ASP GLN LEU TYR MET SEQRES 20 A 308 ALA ASP GLU VAL PHE MET THR GLY THR ALA ALA GLU VAL SEQRES 21 A 308 THR PRO VAL SER MET ILE ASP TRP ARG PRO ILE GLY LYS SEQRES 22 A 308 GLY THR ALA GLY PRO VAL ALA LEU ARG LEU ARG GLU VAL SEQRES 23 A 308 TYR LEU GLU ALA VAL THR GLY ARG ARG PRO GLU TYR GLU SEQRES 24 A 308 GLY TRP LEU THR TYR VAL ASN GLY GLN SEQRES 1 B 308 MET GLN ILE LYS ALA GLY LEU ILE TRP MET ASN GLY ALA SEQRES 2 B 308 PHE VAL PRO GLN GLU GLU ALA LYS THR SER VAL LEU SER SEQRES 3 B 308 HIS ALA LEU HIS TYR GLY THR SER VAL PHE GLU GLY ILE SEQRES 4 B 308 ARG ALA TYR GLU THR ALA LYS GLY PRO ALA ILE PHE ARG SEQRES 5 B 308 LEU LYS GLU HIS VAL LYS ARG PHE TYR ASN SER ALA LYS SEQRES 6 B 308 VAL LEU ARG MET GLU ILE PRO PHE ALA PRO GLU GLU LEU SEQRES 7 B 308 GLU GLU ALA ILE LYS GLU VAL VAL ARG ARG ASN GLY TYR SEQRES 8 B 308 ARG SER CYS TYR ILE ARG PRO LEU ALA TRP MET GLY ALA SEQRES 9 B 308 LYS ALA LEU GLY VAL ASN PRO LEU PRO ASN ASN PRO ALA SEQRES 10 B 308 GLU VAL MET VAL ALA ALA TRP GLU TRP GLY ALA TYR LEU SEQRES 11 B 308 GLY GLU GLU ALA VAL ARG LYS GLY ALA ARG LEU ILE THR SEQRES 12 B 308 SER SER TRP ALA ARG PHE PRO ALA ASN VAL MET PRO GLY SEQRES 13 B 308 LYS ALA LYS VAL GLY GLY ASN TYR VAL ASN SER ALA LEU SEQRES 14 B 308 ALA LYS MET GLU ALA VAL ALA ALA GLY ALA ASP GLU ALA SEQRES 15 B 308 LEU LEU LEU ASP GLU GLU GLY TYR VAL ALA GLU GLY SER SEQRES 16 B 308 GLY GLU ASN LEU PHE PHE VAL ARG ASP GLY VAL ILE TYR SEQRES 17 B 308 ALA LEU GLU HIS SER VAL ASN LEU GLU GLY ILE THR ARG SEQRES 18 B 308 ASP SER VAL ILE ARG ILE ALA LYS ASP LEU GLY TYR GLU SEQRES 19 B 308 VAL GLN VAL VAL ARG ALA THR ARG ASP GLN LEU TYR MET SEQRES 20 B 308 ALA ASP GLU VAL PHE MET THR GLY THR ALA ALA GLU VAL SEQRES 21 B 308 THR PRO VAL SER MET ILE ASP TRP ARG PRO ILE GLY LYS SEQRES 22 B 308 GLY THR ALA GLY PRO VAL ALA LEU ARG LEU ARG GLU VAL SEQRES 23 B 308 TYR LEU GLU ALA VAL THR GLY ARG ARG PRO GLU TYR GLU SEQRES 24 B 308 GLY TRP LEU THR TYR VAL ASN GLY GLN SEQRES 1 C 308 MET GLN ILE LYS ALA GLY LEU ILE TRP MET ASN GLY ALA SEQRES 2 C 308 PHE VAL PRO GLN GLU GLU ALA LYS THR SER VAL LEU SER SEQRES 3 C 308 HIS ALA LEU HIS TYR GLY THR SER VAL PHE GLU GLY ILE SEQRES 4 C 308 ARG ALA TYR GLU THR ALA LYS GLY PRO ALA ILE PHE ARG SEQRES 5 C 308 LEU LYS GLU HIS VAL LYS ARG PHE TYR ASN SER ALA LYS SEQRES 6 C 308 VAL LEU ARG MET GLU ILE PRO PHE ALA PRO GLU GLU LEU SEQRES 7 C 308 GLU GLU ALA ILE LYS GLU VAL VAL ARG ARG ASN GLY TYR SEQRES 8 C 308 ARG SER CYS TYR ILE ARG PRO LEU ALA TRP MET GLY ALA SEQRES 9 C 308 LYS ALA LEU GLY VAL ASN PRO LEU PRO ASN ASN PRO ALA SEQRES 10 C 308 GLU VAL MET VAL ALA ALA TRP GLU TRP GLY ALA TYR LEU SEQRES 11 C 308 GLY GLU GLU ALA VAL ARG LYS GLY ALA ARG LEU ILE THR SEQRES 12 C 308 SER SER TRP ALA ARG PHE PRO ALA ASN VAL MET PRO GLY SEQRES 13 C 308 LYS ALA LYS VAL GLY GLY ASN TYR VAL ASN SER ALA LEU SEQRES 14 C 308 ALA LYS MET GLU ALA VAL ALA ALA GLY ALA ASP GLU ALA SEQRES 15 C 308 LEU LEU LEU ASP GLU GLU GLY TYR VAL ALA GLU GLY SER SEQRES 16 C 308 GLY GLU ASN LEU PHE PHE VAL ARG ASP GLY VAL ILE TYR SEQRES 17 C 308 ALA LEU GLU HIS SER VAL ASN LEU GLU GLY ILE THR ARG SEQRES 18 C 308 ASP SER VAL ILE ARG ILE ALA LYS ASP LEU GLY TYR GLU SEQRES 19 C 308 VAL GLN VAL VAL ARG ALA THR ARG ASP GLN LEU TYR MET SEQRES 20 C 308 ALA ASP GLU VAL PHE MET THR GLY THR ALA ALA GLU VAL SEQRES 21 C 308 THR PRO VAL SER MET ILE ASP TRP ARG PRO ILE GLY LYS SEQRES 22 C 308 GLY THR ALA GLY PRO VAL ALA LEU ARG LEU ARG GLU VAL SEQRES 23 C 308 TYR LEU GLU ALA VAL THR GLY ARG ARG PRO GLU TYR GLU SEQRES 24 C 308 GLY TRP LEU THR TYR VAL ASN GLY GLN HET PLP A 413 15 HET 4MV A2414 8 HET MPD A2416 8 HET MPD A2417 8 HET PLP B 913 15 HET 4MV B 914 8 HET MPD B 915 8 HET MPD B 917 8 HET PLP C1413 15 HET 4MV C1414 8 HET MPD C1416 8 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM 4MV 4-METHYL VALERIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 4 PLP 3(C8 H10 N O6 P) FORMUL 5 4MV 3(C6 H12 O2) FORMUL 6 MPD 5(C6 H14 O2) FORMUL 15 HOH *913(H2 O) HELIX 1 1 PRO A 16 ALA A 20 5 5 HELIX 2 2 SER A 26 GLY A 32 1 7 HELIX 3 3 ARG A 52 LEU A 67 1 16 HELIX 4 4 ALA A 74 ASN A 89 1 16 HELIX 5 5 PRO A 111 ASN A 115 5 5 HELIX 6 6 VAL A 160 GLY A 162 5 3 HELIX 7 7 ASN A 163 ALA A 177 1 15 HELIX 8 8 GLY A 218 LEU A 231 1 14 HELIX 9 9 THR A 241 MET A 247 1 7 HELIX 10 10 GLY A 277 THR A 292 1 16 HELIX 11 11 ARG A 295 GLY A 300 5 6 HELIX 12 12 PRO B 16 ALA B 20 5 5 HELIX 13 13 SER B 26 GLY B 32 1 7 HELIX 14 14 ARG B 52 LEU B 67 1 16 HELIX 15 15 ALA B 74 ASN B 89 1 16 HELIX 16 16 PRO B 111 ASN B 115 5 5 HELIX 17 17 GLY B 131 GLY B 138 1 8 HELIX 18 18 VAL B 160 GLY B 162 5 3 HELIX 19 19 ASN B 163 ALA B 177 1 15 HELIX 20 20 GLY B 218 LEU B 231 1 14 HELIX 21 21 THR B 241 MET B 247 1 7 HELIX 22 22 GLY B 277 THR B 292 1 16 HELIX 23 23 ARG B 295 GLY B 300 5 6 HELIX 24 24 PRO C 16 ALA C 20 5 5 HELIX 25 25 SER C 26 GLY C 32 1 7 HELIX 26 26 ARG C 52 LEU C 67 1 16 HELIX 27 27 ALA C 74 ASN C 89 1 16 HELIX 28 28 PRO C 111 ASN C 115 5 5 HELIX 29 29 VAL C 160 GLY C 162 5 3 HELIX 30 30 ASN C 163 ALA C 177 1 15 HELIX 31 31 GLY C 218 LEU C 231 1 14 HELIX 32 32 THR C 241 MET C 247 1 7 HELIX 33 33 GLY C 277 THR C 292 1 16 HELIX 34 34 ARG C 295 GLY C 300 5 6 SHEET 1 A 5 ALA A 13 VAL A 15 0 SHEET 2 A 5 ILE A 8 MET A 10 -1 N MET A 10 O ALA A 13 SHEET 3 A 5 GLU A 118 GLU A 125 -1 O VAL A 121 N TRP A 9 SHEET 4 A 5 CYS A 94 TRP A 101 -1 N ARG A 97 O ALA A 122 SHEET 5 A 5 SER A 34 PHE A 36 -1 N VAL A 35 O ALA A 100 SHEET 1 B 7 ALA A 13 VAL A 15 0 SHEET 2 B 7 ILE A 8 MET A 10 -1 N MET A 10 O ALA A 13 SHEET 3 B 7 GLU A 118 GLU A 125 -1 O VAL A 121 N TRP A 9 SHEET 4 B 7 CYS A 94 TRP A 101 -1 N ARG A 97 O ALA A 122 SHEET 5 B 7 ILE A 39 TYR A 42 -1 N ILE A 39 O ILE A 96 SHEET 6 B 7 ALA A 49 PHE A 51 -1 O PHE A 51 N ARG A 40 SHEET 7 B 7 LEU A 302 TYR A 304 -1 O THR A 303 N ILE A 50 SHEET 1 C 8 VAL A 191 GLY A 194 0 SHEET 2 C 8 GLU A 181 LEU A 185 -1 N LEU A 184 O GLU A 193 SHEET 3 C 8 ALA A 139 THR A 143 1 N ILE A 142 O LEU A 183 SHEET 4 C 8 GLU A 259 ILE A 266 1 O MET A 265 N LEU A 141 SHEET 5 C 8 GLU A 250 GLY A 255 -1 N VAL A 251 O VAL A 263 SHEET 6 C 8 ASN A 198 ARG A 203 -1 N VAL A 202 O GLU A 250 SHEET 7 C 8 VAL A 206 LEU A 210 -1 O TYR A 208 N PHE A 201 SHEET 8 C 8 VAL A 235 VAL A 238 1 O GLN A 236 N ALA A 209 SHEET 1 D 5 VAL A 191 GLY A 194 0 SHEET 2 D 5 GLU A 181 LEU A 185 -1 N LEU A 184 O GLU A 193 SHEET 3 D 5 ALA A 139 THR A 143 1 N ILE A 142 O LEU A 183 SHEET 4 D 5 GLU A 259 ILE A 266 1 O MET A 265 N LEU A 141 SHEET 5 D 5 ARG A 269 PRO A 270 -1 O ARG A 269 N ILE A 266 SHEET 1 E 5 ALA B 13 VAL B 15 0 SHEET 2 E 5 ILE B 8 MET B 10 -1 N MET B 10 O ALA B 13 SHEET 3 E 5 GLU B 118 TRP B 124 -1 O VAL B 121 N TRP B 9 SHEET 4 E 5 CYS B 94 TRP B 101 -1 N ARG B 97 O ALA B 122 SHEET 5 E 5 SER B 34 PHE B 36 -1 N VAL B 35 O ALA B 100 SHEET 1 F 7 ALA B 13 VAL B 15 0 SHEET 2 F 7 ILE B 8 MET B 10 -1 N MET B 10 O ALA B 13 SHEET 3 F 7 GLU B 118 TRP B 124 -1 O VAL B 121 N TRP B 9 SHEET 4 F 7 CYS B 94 TRP B 101 -1 N ARG B 97 O ALA B 122 SHEET 5 F 7 ILE B 39 TYR B 42 -1 N ILE B 39 O ILE B 96 SHEET 6 F 7 ALA B 49 PHE B 51 -1 O ALA B 49 N TYR B 42 SHEET 7 F 7 LEU B 302 TYR B 304 -1 O THR B 303 N ILE B 50 SHEET 1 G 8 VAL B 191 GLY B 194 0 SHEET 2 G 8 GLU B 181 LEU B 185 -1 N LEU B 184 O GLU B 193 SHEET 3 G 8 ALA B 139 THR B 143 1 N ILE B 142 O LEU B 183 SHEET 4 G 8 GLU B 259 ILE B 266 1 O MET B 265 N LEU B 141 SHEET 5 G 8 GLU B 250 GLY B 255 -1 N VAL B 251 O VAL B 263 SHEET 6 G 8 ASN B 198 ARG B 203 -1 N VAL B 202 O GLU B 250 SHEET 7 G 8 VAL B 206 LEU B 210 -1 O TYR B 208 N PHE B 201 SHEET 8 G 8 GLU B 234 VAL B 238 1 O GLN B 236 N ALA B 209 SHEET 1 H 5 VAL B 191 GLY B 194 0 SHEET 2 H 5 GLU B 181 LEU B 185 -1 N LEU B 184 O GLU B 193 SHEET 3 H 5 ALA B 139 THR B 143 1 N ILE B 142 O LEU B 183 SHEET 4 H 5 GLU B 259 ILE B 266 1 O MET B 265 N LEU B 141 SHEET 5 H 5 ARG B 269 PRO B 270 -1 O ARG B 269 N ILE B 266 SHEET 1 I 5 ALA C 13 VAL C 15 0 SHEET 2 I 5 ILE C 8 MET C 10 -1 N MET C 10 O ALA C 13 SHEET 3 I 5 GLU C 118 GLU C 125 -1 O VAL C 121 N TRP C 9 SHEET 4 I 5 CYS C 94 TRP C 101 -1 N ARG C 97 O ALA C 122 SHEET 5 I 5 SER C 34 PHE C 36 -1 N VAL C 35 O ALA C 100 SHEET 1 J 7 ALA C 13 VAL C 15 0 SHEET 2 J 7 ILE C 8 MET C 10 -1 N MET C 10 O ALA C 13 SHEET 3 J 7 GLU C 118 GLU C 125 -1 O VAL C 121 N TRP C 9 SHEET 4 J 7 CYS C 94 TRP C 101 -1 N ARG C 97 O ALA C 122 SHEET 5 J 7 ILE C 39 THR C 44 -1 N ILE C 39 O ILE C 96 SHEET 6 J 7 GLY C 47 PHE C 51 -1 O PHE C 51 N ARG C 40 SHEET 7 J 7 LEU C 302 TYR C 304 -1 O THR C 303 N ILE C 50 SHEET 1 K 8 VAL C 191 GLY C 194 0 SHEET 2 K 8 GLU C 181 LEU C 185 -1 N LEU C 184 O GLU C 193 SHEET 3 K 8 ALA C 139 THR C 143 1 N ILE C 142 O LEU C 183 SHEET 4 K 8 GLU C 259 ILE C 266 1 O PRO C 262 N ALA C 139 SHEET 5 K 8 GLU C 250 GLY C 255 -1 N MET C 253 O THR C 261 SHEET 6 K 8 ASN C 198 ARG C 203 -1 N VAL C 202 O GLU C 250 SHEET 7 K 8 VAL C 206 LEU C 210 -1 O TYR C 208 N PHE C 201 SHEET 8 K 8 GLU C 234 VAL C 238 1 O GLN C 236 N ALA C 209 SHEET 1 L 5 VAL C 191 GLY C 194 0 SHEET 2 L 5 GLU C 181 LEU C 185 -1 N LEU C 184 O GLU C 193 SHEET 3 L 5 ALA C 139 THR C 143 1 N ILE C 142 O LEU C 183 SHEET 4 L 5 GLU C 259 ILE C 266 1 O PRO C 262 N ALA C 139 SHEET 5 L 5 ARG C 269 PRO C 270 -1 O ARG C 269 N ILE C 266 LINK NZ LYS A 159 C4A PLP A 413 1555 1555 1.38 LINK NZ LYS B 159 C4A PLP B 913 1555 1555 1.38 LINK NZ LYS C 159 C4A PLP C1413 1555 1555 1.39 CISPEP 1 ASN A 115 PRO A 116 0 -0.13 CISPEP 2 ASN B 115 PRO B 116 0 -0.10 CISPEP 3 ASN C 115 PRO C 116 0 -0.01 SITE 1 AC1 15 ARG A 59 ARG A 148 LYS A 159 TYR A 164 SITE 2 AC1 15 GLU A 193 GLY A 196 GLU A 197 LEU A 216 SITE 3 AC1 15 GLY A 218 ILE A 219 THR A 220 GLY A 255 SITE 4 AC1 15 THR A 256 HOH A2420 HOH A2443 SITE 1 AC2 14 ARG B 59 LYS B 159 TYR B 164 GLU B 193 SITE 2 AC2 14 GLY B 196 GLU B 197 LEU B 216 GLY B 218 SITE 3 AC2 14 ILE B 219 THR B 220 GLY B 255 THR B 256 SITE 4 AC2 14 HOH B 926 HOH B 944 SITE 1 AC3 14 ARG C 59 ARG C 148 LYS C 159 TYR C 164 SITE 2 AC3 14 GLU C 193 GLY C 196 LEU C 216 GLY C 218 SITE 3 AC3 14 ILE C 219 THR C 220 GLY C 255 THR C 256 SITE 4 AC3 14 HOH C1423 HOH C1466 SITE 1 AC4 6 TYR A 95 GLY A 196 THR A 256 ALA A 257 SITE 2 AC4 6 HOH A2456 TYR C 31 SITE 1 AC5 7 TYR B 31 GLY B 38 TYR B 95 GLY B 196 SITE 2 AC5 7 THR B 256 ALA B 257 HOH B 962 SITE 1 AC6 5 GLY C 38 TYR C 95 THR C 256 ALA C 257 SITE 2 AC6 5 HOH C1464 SITE 1 AC7 7 ASP A 230 GLU A 297 HOH A2483 GLU C 289 SITE 2 AC7 7 ARG C 294 ARG C 295 HOH C1639 SITE 1 AC8 8 ARG A 52 GLU A 55 GLU A 217 ILE A 219 SITE 2 AC8 8 ASP A 222 HOH A2473 ARG C 203 ASP C 204 SITE 1 AC9 4 TYR B 95 LEU B 107 TRP B 124 TRP B 126 SITE 1 BC1 8 ARG A 203 ASP A 204 ARG B 52 GLU B 55 SITE 2 BC1 8 GLU B 217 GLY B 218 ASP B 222 HOH B 975 SITE 1 BC2 8 ARG B 203 ASP B 204 ARG C 52 GLU C 55 SITE 2 BC2 8 GLU C 217 ILE C 219 ASP C 222 HOH C1481 CRYST1 143.652 143.652 116.540 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008581 0.00000