HEADER LIGASE 19-MAR-07 2EJM TITLE SOLUTION STRUCTURE OF RUH-072, AN APO-BIOTNYL DOMAIN FORM HUMAN ACETYL TITLE 2 COENZYME A CARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLCROTONOYL-COA CARBOXYLASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN OF ACETYL COA CARBOXYLASE; COMPND 5 SYNONYM: 3-METHYLCROTONYL-COA CARBOXYLASE 1, MCCASE SUBUNIT ALPHA, 3- COMPND 6 METHYLCROTONYL-COA:CARBON DIOXIDE LIGASE SUBUNIT ALPHA, 3- COMPND 7 METHYLCROTONYL-COA CARBOXYLASE BIOTIN-CONTAINING SUBUNIT; COMPND 8 EC: 6.4.1.4; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MCCC1, MCCA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PO50719-21; SOURCE 10 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BIOTIN-REQUIRING ENZYME, BIOTIN, ACTYL COA CARBOXYLASE, FATTY ACID KEYWDS 2 SYNTHESIS, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.Z.M.RUHUL MOMEN,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EJM 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EJM 1 VERSN REVDAT 1 25-SEP-07 2EJM 0 JRNL AUTH A.Z.M.RUHUL MOMEN,H.HIROTA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RUH-072, AN APO-BIOTNYL DOMAIN FORM JRNL TITL 2 HUMAN ACETYL COENZYME A CARBOXYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.07 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EJM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026744. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.29MM DOMAIN U-15N, 13C; 20MM D REMARK 210 -TRIS-HCL (PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90%H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04, REMARK 210 KUJIRA 0.955 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LYS A 63 O GLU A 81 1.59 REMARK 500 H GLU A 26 O VAL A 44 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 105.27 65.74 REMARK 500 1 SER A 5 -40.47 179.80 REMARK 500 1 SER A 6 158.23 68.65 REMARK 500 1 SER A 10 -81.09 -144.91 REMARK 500 1 GLN A 14 125.81 -174.77 REMARK 500 1 PHE A 29 50.76 -103.51 REMARK 500 1 LYS A 31 166.06 176.25 REMARK 500 1 ALA A 47 -79.31 -117.57 REMARK 500 1 LYS A 49 23.46 49.99 REMARK 500 1 LYS A 64 146.45 -170.34 REMARK 500 1 HIS A 76 64.24 71.70 REMARK 500 1 SER A 87 89.51 49.88 REMARK 500 1 ASP A 88 97.42 177.71 REMARK 500 2 SER A 2 87.67 -174.83 REMARK 500 2 SER A 3 -62.04 75.79 REMARK 500 2 SER A 9 -58.46 -170.31 REMARK 500 2 SER A 10 82.32 65.34 REMARK 500 2 GLN A 14 58.54 -154.45 REMARK 500 2 PHE A 29 50.53 -100.21 REMARK 500 2 LYS A 31 -165.06 -177.83 REMARK 500 2 SER A 41 91.17 -68.74 REMARK 500 2 ALA A 47 -72.88 -122.23 REMARK 500 2 MET A 48 74.53 -109.13 REMARK 500 2 HIS A 76 60.82 80.86 REMARK 500 2 GLU A 86 172.12 -52.11 REMARK 500 2 LYS A 89 175.03 53.83 REMARK 500 2 SER A 92 170.04 54.29 REMARK 500 2 SER A 97 133.60 64.79 REMARK 500 2 SER A 98 78.40 -171.28 REMARK 500 3 SER A 10 162.58 61.14 REMARK 500 3 GLU A 12 141.98 62.07 REMARK 500 3 PHE A 29 51.14 -98.93 REMARK 500 3 LYS A 31 -164.23 -177.28 REMARK 500 3 MET A 48 76.26 -113.17 REMARK 500 3 LYS A 49 29.61 41.06 REMARK 500 3 ARG A 68 -169.66 -114.88 REMARK 500 3 HIS A 76 51.83 78.84 REMARK 500 3 GLU A 85 172.54 -48.82 REMARK 500 3 LYS A 89 166.29 57.30 REMARK 500 3 SER A 98 162.71 -42.25 REMARK 500 4 SER A 5 163.35 60.38 REMARK 500 4 SER A 9 135.79 -178.66 REMARK 500 4 GLN A 14 124.18 -177.00 REMARK 500 4 PHE A 29 46.76 -90.31 REMARK 500 4 LYS A 31 166.21 177.00 REMARK 500 4 ALA A 38 124.77 -39.87 REMARK 500 4 MET A 48 26.06 43.50 REMARK 500 4 HIS A 76 71.43 68.69 REMARK 500 4 SER A 87 79.14 -157.53 REMARK 500 4 SER A 97 -62.28 -161.59 REMARK 500 REMARK 500 THIS ENTRY HAS 271 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003002080.1 RELATED DB: TARGETDB DBREF 2EJM A 8 93 UNP Q96RQ3 MCCA_HUMAN 640 725 SEQADV 2EJM GLY A 1 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM SER A 2 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM SER A 3 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM GLY A 4 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM SER A 5 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM SER A 6 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM GLY A 7 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM SER A 94 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM GLY A 95 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM PRO A 96 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM SER A 97 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM SER A 98 UNP Q96RQ3 EXPRESSION TAG SEQADV 2EJM GLY A 99 UNP Q96RQ3 EXPRESSION TAG SEQRES 1 A 99 GLY SER SER GLY SER SER GLY VAL SER SER GLN GLU THR SEQRES 2 A 99 GLN GLY GLY PRO LEU ALA PRO MET THR GLY THR ILE GLU SEQRES 3 A 99 LYS VAL PHE VAL LYS ALA GLY ASP LYS VAL LYS ALA GLY SEQRES 4 A 99 ASP SER LEU MET VAL MET ILE ALA MET LYS MET GLU HIS SEQRES 5 A 99 THR ILE LYS SER PRO LYS ASP GLY THR VAL LYS LYS VAL SEQRES 6 A 99 PHE TYR ARG GLU GLY ALA GLN ALA ASN ARG HIS THR PRO SEQRES 7 A 99 LEU VAL GLU PHE GLU GLU GLU GLU SER ASP LYS ARG GLU SEQRES 8 A 99 SER GLU SER GLY PRO SER SER GLY SHEET 1 A 4 GLU A 51 LYS A 55 0 SHEET 2 A 4 SER A 41 ILE A 46 -1 N MET A 45 O HIS A 52 SHEET 3 A 4 GLY A 23 VAL A 28 -1 N GLU A 26 O VAL A 44 SHEET 4 A 4 ALA A 71 ALA A 73 -1 O ALA A 71 N ILE A 25 SHEET 1 B 3 ASP A 34 VAL A 36 0 SHEET 2 B 3 GLY A 60 VAL A 65 -1 O GLY A 60 N VAL A 36 SHEET 3 B 3 VAL A 80 PHE A 82 -1 O GLU A 81 N LYS A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1