HEADER MEMBRANE PROTEIN 22-MAR-07 2EJY TITLE SOLUTION STRUCTURE OF THE P55 PDZ T85C DOMAIN COMPLEXED WITH THE TITLE 2 GLYCOPHORIN C F127C PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 55 KDA ERYTHROCYTE MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN, RESIDUES 69-153; COMPND 5 SYNONYM: P55, MEMBRANE PROTEIN, PALMITOYLATED 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLYCOPHORIN C; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: C-TERMINAL REGION, RESIDUES 117-128; COMPND 12 SYNONYM: PAS-2', GLYCOPROTEIN BETA, GLPC, GLYCOCONNECTIN, COMPND 13 SIALOGLYCOPROTEIN D, GLYCOPHORIN D, GPD, CD236 ANTIGEN; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PUBK19 KEYWDS GPC, MAGUK, P55, PDZ, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.KUSUNOKI,T.KOHNO REVDAT 3 10-NOV-21 2EJY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EJY 1 VERSN REVDAT 1 12-FEB-08 2EJY 0 JRNL AUTH H.KUSUNOKI,T.KOHNO JRNL TITL STRUCTURAL INSIGHT INTO THE INTERACTION BETWEEN THE P55 PDZ JRNL TITL 2 DOMAIN AND GLYCOPHORIN C JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 359 972 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17572384 JRNL DOI 10.1016/J.BBRC.2007.05.215 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T. (CNS), BRUNGER, A.T. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1491 RESTRAINTS, 1291 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 130 DIHEDRAL ANGLE RESTRAINTS, 70 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 2EJY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000026756. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 45 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM P55 PDZ DOMAIN-GPC PEPTIDE REMARK 210 COMPLEX (PDZ U-15N, PEPTIDE NA); REMARK 210 22.5MM SODIUM PHOSPHATE, 45MM REMARK 210 NACL, 90% H2O, 10% D2O; 1.2MM REMARK 210 P55 PDZ DOMAIN-GPC PEPTIDE REMARK 210 COMPLEX (PDZ U-13C, 15N, PEPTIDE REMARK 210 NA); 22.5MM SODIUM PHOSPHATE, REMARK 210 45MM NACL, 90% H2O, 10% D2O; REMARK 210 1.2MM P55 PDZ DOMAIN-GPC PEPTIDE REMARK 210 COMPLEX (PDZ U-13C, 15N, PEPTIDE REMARK 210 NA); 22.5MM SODIUM PHOSPHATE, REMARK 210 45MM NACL, 100% D2O; 0.6MM P55 REMARK 210 PDZ DOMAIN-GPC PEPTIDE COMPLEX REMARK 210 (PEPTIDE U-15N, PDZ NA); 22.5MM REMARK 210 SODIUM PHOSPHATE, 45MM NACL, 90% REMARK 210 H2O, 10% D2O; 0.9MM P55 PDZ REMARK 210 DOMAIN-GPC PEPTIDE COMPLEX REMARK 210 (PEPTIDE U-13C, 15N, PDZ NA); REMARK 210 22.5MM SODIUM PHOSPHATE, 45MM REMARK 210 NACL, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D F2_13C_ REMARK 210 FILTERED_NOESY; 2D F1F2_13C_ REMARK 210 FILTERED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 57 REMARK 465 GLY A 58 REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 SER A 65 REMARK 465 GLY A 66 REMARK 465 HIS A 67 REMARK 465 MET A 68 REMARK 465 ASP B 117 REMARK 465 ALA B 118 REMARK 465 GLY B 119 REMARK 465 ASP B 120 REMARK 465 SER B 121 REMARK 465 SER B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 92 87.71 76.27 REMARK 500 1 VAL A 96 106.15 -59.01 REMARK 500 1 ARG A 98 136.15 -173.57 REMARK 500 1 HIS A 128 -165.20 -58.18 REMARK 500 1 ASN A 151 41.09 -96.54 REMARK 500 1 GLN A 152 109.65 61.10 REMARK 500 2 GLN A 92 88.81 71.93 REMARK 500 2 VAL A 96 106.01 -58.84 REMARK 500 2 ARG A 98 141.25 -173.55 REMARK 500 2 HIS A 128 -109.11 -59.47 REMARK 500 2 GLN A 152 77.69 63.11 REMARK 500 3 GLN A 92 88.51 76.56 REMARK 500 3 ARG A 98 128.84 -173.61 REMARK 500 3 THR A 126 -168.55 -103.60 REMARK 500 3 HIS A 128 -176.10 -54.57 REMARK 500 3 GLN A 152 105.44 61.50 REMARK 500 4 GLN A 92 87.15 44.02 REMARK 500 4 VAL A 96 106.36 -58.79 REMARK 500 4 ARG A 98 134.43 -173.53 REMARK 500 4 VAL A 113 108.32 -42.38 REMARK 500 4 HIS A 128 -166.04 -57.26 REMARK 500 5 GLN A 92 76.43 67.79 REMARK 500 5 VAL A 96 106.08 -58.59 REMARK 500 5 ARG A 98 145.92 -173.45 REMARK 500 5 VAL A 125 156.97 58.65 REMARK 500 5 HIS A 128 -163.06 -59.23 REMARK 500 6 GLN A 92 89.20 67.67 REMARK 500 6 VAL A 96 106.20 -58.54 REMARK 500 6 ARG A 98 126.92 -172.38 REMARK 500 6 HIS A 128 -167.34 -57.36 REMARK 500 6 GLN A 152 37.94 -144.87 REMARK 500 7 GLN A 92 86.84 62.34 REMARK 500 7 VAL A 96 105.86 -58.46 REMARK 500 7 ARG A 98 130.00 -173.52 REMARK 500 7 HIS A 128 -112.59 -61.25 REMARK 500 7 GLU B 125 139.13 -174.99 REMARK 500 8 GLN A 92 89.84 68.56 REMARK 500 8 VAL A 96 105.99 -58.80 REMARK 500 8 ARG A 98 131.63 -171.22 REMARK 500 8 HIS A 128 -167.69 -56.76 REMARK 500 9 VAL A 77 15.67 -140.14 REMARK 500 9 GLN A 92 87.09 69.11 REMARK 500 9 VAL A 96 105.97 -59.90 REMARK 500 9 ARG A 98 131.82 -172.20 REMARK 500 9 HIS A 128 179.14 -52.37 REMARK 500 10 GLN A 92 82.18 56.57 REMARK 500 10 VAL A 96 105.70 -58.70 REMARK 500 10 ARG A 98 133.94 -173.40 REMARK 500 10 HIS A 128 -166.82 -57.31 REMARK 500 11 GLN A 92 88.57 71.11 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EV8 RELATED DB: PDB DBREF 2EJY A 69 153 UNP Q00013 EM55_HUMAN 69 153 DBREF 2EJY B 117 128 UNP P04921 GLPC_HUMAN 117 128 SEQADV 2EJY MET A 57 UNP Q00013 EXPRESSION TAG SEQADV 2EJY GLY A 58 UNP Q00013 EXPRESSION TAG SEQADV 2EJY HIS A 59 UNP Q00013 EXPRESSION TAG SEQADV 2EJY HIS A 60 UNP Q00013 EXPRESSION TAG SEQADV 2EJY HIS A 61 UNP Q00013 EXPRESSION TAG SEQADV 2EJY HIS A 62 UNP Q00013 EXPRESSION TAG SEQADV 2EJY HIS A 63 UNP Q00013 EXPRESSION TAG SEQADV 2EJY HIS A 64 UNP Q00013 EXPRESSION TAG SEQADV 2EJY SER A 65 UNP Q00013 EXPRESSION TAG SEQADV 2EJY GLY A 66 UNP Q00013 EXPRESSION TAG SEQADV 2EJY HIS A 67 UNP Q00013 EXPRESSION TAG SEQADV 2EJY MET A 68 UNP Q00013 EXPRESSION TAG SEQADV 2EJY CYS A 85 UNP Q00013 THR 85 ENGINEERED MUTATION SEQADV 2EJY CYS B 127 UNP P04921 PHE 127 ENGINEERED MUTATION SEQRES 1 A 97 MET GLY HIS HIS HIS HIS HIS HIS SER GLY HIS MET VAL SEQRES 2 A 97 ARG LEU ILE GLN PHE GLU LYS VAL THR GLU GLU PRO MET SEQRES 3 A 97 GLY ILE CYS LEU LYS LEU ASN GLU LYS GLN SER CYS THR SEQRES 4 A 97 VAL ALA ARG ILE LEU HIS GLY GLY MET ILE HIS ARG GLN SEQRES 5 A 97 GLY SER LEU HIS VAL GLY ASP GLU ILE LEU GLU ILE ASN SEQRES 6 A 97 GLY THR ASN VAL THR ASN HIS SER VAL ASP GLN LEU GLN SEQRES 7 A 97 LYS ALA MET LYS GLU THR LYS GLY MET ILE SER LEU LYS SEQRES 8 A 97 VAL ILE PRO ASN GLN GLN SEQRES 1 B 12 ASP ALA GLY ASP SER SER ARG LYS GLU TYR CYS ILE HELIX 1 1 GLY A 103 GLY A 109 1 7 HELIX 2 2 VAL A 130 THR A 140 1 11 SHEET 1 A 6 ARG A 70 LYS A 76 0 SHEET 2 A 6 GLY A 142 ILE A 149 -1 O GLY A 142 N LYS A 76 SHEET 3 A 6 GLU A 116 ILE A 120 -1 N GLU A 119 O LYS A 147 SHEET 4 A 6 CYS A 94 ILE A 99 -1 N CYS A 94 O ILE A 117 SHEET 5 A 6 ILE A 84 LEU A 88 -1 N CYS A 85 O ALA A 97 SHEET 6 A 6 TYR B 126 CYS B 127 -1 O TYR B 126 N LEU A 86 SSBOND 1 CYS A 85 CYS B 127 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1