HEADER TRANSCRIPTION 22-MAR-07 2EK5 TITLE CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL FACTOR FROM C.GLUTAMICUM AT TITLE 2 2.2 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED TRANSCRIPTIONAL REGULATORS; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRANSCRIPTION FACTOR, BACTERIAL REGULATORY PROTEIN, GNTR COMPND 5 FAMILY; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 STRAIN: ATCC13032; SOURCE 5 GENE: CGL2947; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26(B) KEYWDS HELIX-TURN-HELIX, INTERWINED ALPHA HELICES, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.G.GAO,M.YAO,I.TANAKA REVDAT 5 30-OCT-24 2EK5 1 REMARK REVDAT 4 09-SEP-20 2EK5 1 TITLE SEQADV LINK REVDAT 3 13-JUL-11 2EK5 1 VERSN REVDAT 2 24-FEB-09 2EK5 1 VERSN REVDAT 1 18-SEP-07 2EK5 0 JRNL AUTH Y.G.GAO,M.YAO,H.ITOU,Y.ZHOU,I.TANAKA JRNL TITL THE STRUCTURES OF TRANSCRIPTION FACTOR CGL2947 FROM JRNL TITL 2 CORYNEBACTERIUM GLUTAMICUM IN TWO CRYSTAL FORMS: A NOVEL JRNL TITL 3 HOMODIMER ASSEMBLING AND THE IMPLICATION FOR JRNL TITL 4 EFFECTOR-BINDING MODE JRNL REF PROTEIN SCI. V. 16 1878 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17766384 JRNL DOI 10.1110/PS.072976907 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 9.9 REMARK 3 NUMBER OF REFLECTIONS : 23916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2376 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2688 REMARK 3 BIN FREE R VALUE : 0.2947 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 218 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.45200 REMARK 3 B22 (A**2) : 0.72600 REMARK 3 B33 (A**2) : 5.73200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23916 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.622 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : 0.29900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH8.0, 15% ETOH, 0.2M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.07600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.07600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.31900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.24700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.31900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.24700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.07600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.31900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.24700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.07600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.31900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.24700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAIN A AND CHAIN B, CHAIN C AND CHAIN D IN AN ASYMMETRIC REMARK 300 UNIT FORM TWO HOMODIMERS, RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 148.98800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 182.15200 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -68.63800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.07600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLY A 118 REMARK 465 LEU A 119 REMARK 465 TYR A 120 REMARK 465 LYS A 121 REMARK 465 LEU A 122 REMARK 465 GLU A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 PRO B 4 REMARK 465 LEU B 5 REMARK 465 TYR B 6 REMARK 465 LYS B 7 REMARK 465 GLN B 8 REMARK 465 ILE B 9 REMARK 465 LEU B 119 REMARK 465 TYR B 120 REMARK 465 LYS B 121 REMARK 465 LEU B 122 REMARK 465 GLU B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 MSE C 1 REMARK 465 THR C 2 REMARK 465 LYS C 121 REMARK 465 LEU C 122 REMARK 465 GLU C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 HIS C 126 REMARK 465 HIS C 127 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 465 MSE D 1 REMARK 465 THR D 2 REMARK 465 GLY D 118 REMARK 465 LEU D 119 REMARK 465 TYR D 120 REMARK 465 LYS D 121 REMARK 465 LEU D 122 REMARK 465 GLU D 123 REMARK 465 HIS D 124 REMARK 465 HIS D 125 REMARK 465 HIS D 126 REMARK 465 HIS D 127 REMARK 465 HIS D 128 REMARK 465 HIS D 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 27 OE1 GLU A 33 1.98 REMARK 500 O HOH A 131 O HOH A 135 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 CG - CD - NE ANGL. DEV. = -21.9 DEGREES REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 121.82 -36.17 REMARK 500 GLU B 115 100.97 -54.52 REMARK 500 SER B 116 50.37 94.90 REMARK 500 ARG B 117 -164.50 -46.22 REMARK 500 ARG C 62 119.67 -34.62 REMARK 500 SER D 23 -159.97 -122.01 REMARK 500 ARG D 62 131.04 -33.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DU9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MPD DBREF 2EK5 A 1 121 UNP Q8NLJ5 Q8NLJ5_CORGL 1 121 DBREF 2EK5 B 1 121 UNP Q8NLJ5 Q8NLJ5_CORGL 1 121 DBREF 2EK5 C 1 121 UNP Q8NLJ5 Q8NLJ5_CORGL 1 121 DBREF 2EK5 D 1 121 UNP Q8NLJ5 Q8NLJ5_CORGL 1 121 SEQADV 2EK5 LEU A 122 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 GLU A 123 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS A 124 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS A 125 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS A 126 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS A 127 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS A 128 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS A 129 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 LEU B 122 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 GLU B 123 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS B 124 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS B 125 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS B 126 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS B 127 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS B 128 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS B 129 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 LEU C 122 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 GLU C 123 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS C 124 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS C 125 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS C 126 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS C 127 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS C 128 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS C 129 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 LEU D 122 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 GLU D 123 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS D 124 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS D 125 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS D 126 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS D 127 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS D 128 UNP Q8NLJ5 EXPRESSION TAG SEQADV 2EK5 HIS D 129 UNP Q8NLJ5 EXPRESSION TAG SEQRES 1 A 129 MSE THR VAL PRO LEU TYR LYS GLN ILE ALA SER LEU ILE SEQRES 2 A 129 GLU ASP SER ILE VAL ASP GLY THR LEU SER ILE ASP GLN SEQRES 3 A 129 ARG VAL PRO SER THR ASN GLU LEU ALA ALA PHE HIS ARG SEQRES 4 A 129 ILE ASN PRO ALA THR ALA ARG ASN GLY LEU THR LEU LEU SEQRES 5 A 129 VAL GLU ALA GLY ILE LEU TYR LYS LYS ARG GLY ILE GLY SEQRES 6 A 129 MSE PHE VAL SER ALA GLN ALA PRO ALA LEU ILE ARG GLU SEQRES 7 A 129 ARG ARG ASP ALA ALA PHE ALA ALA THR TYR VAL ALA PRO SEQRES 8 A 129 LEU ILE ASP GLU SER ILE HIS LEU GLY PHE THR ARG ALA SEQRES 9 A 129 ARG ILE HIS ALA LEU LEU ASP GLN VAL ALA GLU SER ARG SEQRES 10 A 129 GLY LEU TYR LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 129 MSE THR VAL PRO LEU TYR LYS GLN ILE ALA SER LEU ILE SEQRES 2 B 129 GLU ASP SER ILE VAL ASP GLY THR LEU SER ILE ASP GLN SEQRES 3 B 129 ARG VAL PRO SER THR ASN GLU LEU ALA ALA PHE HIS ARG SEQRES 4 B 129 ILE ASN PRO ALA THR ALA ARG ASN GLY LEU THR LEU LEU SEQRES 5 B 129 VAL GLU ALA GLY ILE LEU TYR LYS LYS ARG GLY ILE GLY SEQRES 6 B 129 MSE PHE VAL SER ALA GLN ALA PRO ALA LEU ILE ARG GLU SEQRES 7 B 129 ARG ARG ASP ALA ALA PHE ALA ALA THR TYR VAL ALA PRO SEQRES 8 B 129 LEU ILE ASP GLU SER ILE HIS LEU GLY PHE THR ARG ALA SEQRES 9 B 129 ARG ILE HIS ALA LEU LEU ASP GLN VAL ALA GLU SER ARG SEQRES 10 B 129 GLY LEU TYR LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 129 MSE THR VAL PRO LEU TYR LYS GLN ILE ALA SER LEU ILE SEQRES 2 C 129 GLU ASP SER ILE VAL ASP GLY THR LEU SER ILE ASP GLN SEQRES 3 C 129 ARG VAL PRO SER THR ASN GLU LEU ALA ALA PHE HIS ARG SEQRES 4 C 129 ILE ASN PRO ALA THR ALA ARG ASN GLY LEU THR LEU LEU SEQRES 5 C 129 VAL GLU ALA GLY ILE LEU TYR LYS LYS ARG GLY ILE GLY SEQRES 6 C 129 MSE PHE VAL SER ALA GLN ALA PRO ALA LEU ILE ARG GLU SEQRES 7 C 129 ARG ARG ASP ALA ALA PHE ALA ALA THR TYR VAL ALA PRO SEQRES 8 C 129 LEU ILE ASP GLU SER ILE HIS LEU GLY PHE THR ARG ALA SEQRES 9 C 129 ARG ILE HIS ALA LEU LEU ASP GLN VAL ALA GLU SER ARG SEQRES 10 C 129 GLY LEU TYR LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 129 MSE THR VAL PRO LEU TYR LYS GLN ILE ALA SER LEU ILE SEQRES 2 D 129 GLU ASP SER ILE VAL ASP GLY THR LEU SER ILE ASP GLN SEQRES 3 D 129 ARG VAL PRO SER THR ASN GLU LEU ALA ALA PHE HIS ARG SEQRES 4 D 129 ILE ASN PRO ALA THR ALA ARG ASN GLY LEU THR LEU LEU SEQRES 5 D 129 VAL GLU ALA GLY ILE LEU TYR LYS LYS ARG GLY ILE GLY SEQRES 6 D 129 MSE PHE VAL SER ALA GLN ALA PRO ALA LEU ILE ARG GLU SEQRES 7 D 129 ARG ARG ASP ALA ALA PHE ALA ALA THR TYR VAL ALA PRO SEQRES 8 D 129 LEU ILE ASP GLU SER ILE HIS LEU GLY PHE THR ARG ALA SEQRES 9 D 129 ARG ILE HIS ALA LEU LEU ASP GLN VAL ALA GLU SER ARG SEQRES 10 D 129 GLY LEU TYR LYS LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2EK5 MSE A 66 MET SELENOMETHIONINE MODRES 2EK5 MSE B 66 MET SELENOMETHIONINE MODRES 2EK5 MSE C 66 MET SELENOMETHIONINE MODRES 2EK5 MSE D 66 MET SELENOMETHIONINE HET MSE A 66 8 HET MSE B 66 8 HET MSE C 66 8 HET MSE D 66 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 HOH *226(H2 O) HELIX 1 1 PRO A 4 ASP A 19 1 16 HELIX 2 2 SER A 30 HIS A 38 1 9 HELIX 3 3 ASN A 41 GLU A 54 1 14 HELIX 4 4 GLN A 71 VAL A 89 1 19 HELIX 5 5 VAL A 89 GLY A 100 1 12 HELIX 6 6 THR A 102 SER A 116 1 15 HELIX 7 7 ALA B 10 ASP B 19 1 10 HELIX 8 8 SER B 30 ARG B 39 1 10 HELIX 9 9 ASN B 41 ALA B 55 1 15 HELIX 10 10 GLN B 71 TYR B 88 1 18 HELIX 11 11 TYR B 88 GLY B 100 1 13 HELIX 12 12 THR B 102 GLU B 115 1 14 HELIX 13 13 PRO C 4 ASP C 19 1 16 HELIX 14 14 SER C 30 ARG C 39 1 10 HELIX 15 15 ASN C 41 ALA C 55 1 15 HELIX 16 16 GLN C 71 TYR C 88 1 18 HELIX 17 17 TYR C 88 LEU C 99 1 12 HELIX 18 18 THR C 102 ARG C 117 1 16 HELIX 19 19 PRO D 4 ASP D 19 1 16 HELIX 20 20 SER D 30 ARG D 39 1 10 HELIX 21 21 ASN D 41 ALA D 55 1 15 HELIX 22 22 GLN D 71 VAL D 89 1 19 HELIX 23 23 VAL D 89 GLY D 100 1 12 HELIX 24 24 THR D 102 SER D 116 1 15 SHEET 1 A 2 LEU A 58 LYS A 61 0 SHEET 2 A 2 GLY A 65 VAL A 68 -1 O GLY A 65 N LYS A 61 SHEET 1 B 2 LEU B 58 LYS B 61 0 SHEET 2 B 2 GLY B 65 VAL B 68 -1 O PHE B 67 N TYR B 59 SHEET 1 C 2 LEU C 58 LYS C 61 0 SHEET 2 C 2 GLY C 65 VAL C 68 -1 O PHE C 67 N TYR C 59 SHEET 1 D 2 LEU D 58 LYS D 61 0 SHEET 2 D 2 GLY D 65 VAL D 68 -1 O GLY D 65 N LYS D 61 LINK C GLY A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N PHE A 67 1555 1555 1.33 LINK C GLY B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N PHE B 67 1555 1555 1.33 LINK C GLY C 65 N MSE C 66 1555 1555 1.33 LINK C MSE C 66 N PHE C 67 1555 1555 1.33 LINK C GLY D 65 N MSE D 66 1555 1555 1.33 LINK C MSE D 66 N PHE D 67 1555 1555 1.33 CRYST1 68.638 74.494 182.152 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005490 0.00000